Conservation of cofitness between Rru_A1409 and Rru_A0571 in Rhodospirillum rubrum S1H

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rhodospirillum rubrum S1H 1.0 Rru_A1409 L-lactate permease (NCBI) 1.0 Rru_A0571 hypothetical protein (NCBI) 0.60 7
Magnetospirillum magneticum AMB-1 0.80 AMB_RS20875 L-lactate permease 0.44 AMB_RS01240 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 64
Azospirillum brasilense Sp245 0.74 AZOBR_RS25125 L-lactate permease 0.48 AZOBR_RS11890 16S rRNA methyltransferase low > 97
Acinetobacter radioresistens SK82 0.70 MPMX26_02259 L-lactate permease 0.19 MPMX26_01001 Ribosomal RNA small subunit methyltransferase E low > 36
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.69 GFF411 L-lactate permease 0.18 GFF3048 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) low > 78
Pantoea sp. MT58 0.68 IAI47_15030 L-lactate permease 0.17 IAI47_03620 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 76
Shewanella oneidensis MR-1 0.67 SO0827 lldP propionate/L-lactate/D-lactate transporter (from data) 0.17 SO0832 conserved hypothetical protein TIGR00046 (NCBI ptt file) low > 76
Escherichia coli BW25113 0.67 b3603 lldP (R)-lactate / (S)-lactate / glycolate:H+ symporter LldP (from data) 0.18 b2946 yggJ orf, hypothetical protein (VIMSS) low > 76
Enterobacter sp. TBS_079 0.67 MPMX20_00131 L-lactate permease 0.18 MPMX20_03804 Ribosomal RNA small subunit methyltransferase E low > 85
Klebsiella michiganensis M5al 0.67 BWI76_RS27185 L-lactate/D-lactate permease (from data) 0.16 BWI76_RS24070 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 92
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_00096 L-lactate permease 0.18 OHPLBJKB_00772 Ribosomal RNA small subunit methyltransferase E low > 73
Enterobacter asburiae PDN3 0.67 EX28DRAFT_3853 L-lactate transport 0.17 EX28DRAFT_2984 RNA methyltransferase, RsmE family low > 76
Pseudomonas simiae WCS417 0.67 PS417_24105 D-lactate transporter (lctP family) (from data) 0.22 PS417_26545 16S rRNA methyltransferase low > 88
Escherichia coli ECRC101 0.67 MCAODC_06290 lldP L-lactate permease 0.18 MCAODC_09800 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 87
Escherichia coli BL21 0.67 ECD_03461 L-lactate permease 0.18 ECD_02776 16S rRNA m(3)U1498 methyltransferase, SAM-dependent low > 61
Escherichia fergusonii Becca 0.67 EFB2_00207 L-lactate permease 0.18 EFB2_00956 Ribosomal RNA small subunit methyltransferase E low > 86
Escherichia coli ECRC100 0.67 OKFHMN_15780 lldP L-lactate permease 0.18 OKFHMN_19280 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 80
Escherichia coli ECRC62 0.67 BNILDI_03855 lldP L-lactate permease 0.17 BNILDI_09730 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 75
Escherichia coli ECOR38 0.67 HEPCGN_14620 lldP L-lactate permease 0.18 HEPCGN_18585 Ribosomal RNA small subunit methyltransferase E low > 87
Escherichia coli ECRC102 0.67 NIAGMN_13540 lldP L-lactate permease 0.18 NIAGMN_17045 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Escherichia coli Nissle 1917 0.67 ECOLIN_RS20570 L-lactate permease 0.18 ECOLIN_RS16390 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 55
Escherichia coli ECRC98 0.67 JDDGAC_19405 lldP L-lactate permease 0.18 JDDGAC_22910 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 86
Escherichia coli ECOR27 0.67 NOLOHH_07660 lldP L-lactate permease 0.18 NOLOHH_11150 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 75
Escherichia coli ECRC99 0.67 KEDOAH_12370 lldP L-lactate permease 0.18 KEDOAH_08860 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Castellaniella sp019104865 MT123 0.66 ABCV34_RS10295 L-lactate permease 0.15 ABCV34_RS15445 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 48
Pseudomonas fluorescens SBW25 0.66 PFLU_RS25945 L-lactate permease 0.22 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 109
Pseudomonas fluorescens SBW25-INTG 0.66 PFLU_RS25945 L-lactate permease 0.22 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 109
Pseudomonas putida KT2440 0.66 PP_4735 L-lactate permease 0.21 PP_4985 16S rRNA m3U1498 methyltransferase low > 96
Pseudomonas fluorescens FW300-N2E3 0.66 AO353_05700 L-lactate permease 0.21 AO353_08050 16S rRNA methyltransferase low > 101
Pseudomonas sp. RS175 0.66 PFR28_00063 Glycolate permease GlcA 0.22 PFR28_04209 Ribosomal RNA small subunit methyltransferase E low > 88
Pseudomonas fluorescens GW456-L13 0.65 PfGW456L13_5114 L-lactate permease 0.21 PfGW456L13_1043 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) low > 87
Pseudomonas fluorescens FW300-N2C3 0.65 AO356_07550 L-lactate and D-lactate permease (lctP family) (from data) 0.22 AO356_13565 16S rRNA methyltransferase low > 104
Pseudomonas sp. S08-1 0.65 OH686_17015 L-lactate permease 0.21 OH686_10855 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 80
Pseudomonas fluorescens FW300-N1B4 0.65 Pf1N1B4_1186 L-lactate permease 0.22 Pf1N1B4_2376 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) — —
Pseudomonas fluorescens FW300-N2E2 0.65 Pf6N2E2_3380 L-lactate permease 0.21 Pf6N2E2_4630 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) low > 103
Paraburkholderia sabiae LMG 24235 0.65 QEN71_RS10155 lactate permease LctP family transporter 0.18 QEN71_RS27020 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 153
Cupriavidus basilensis FW507-4G11 0.63 RR42_RS21280 L-lactate permease 0.19 RR42_RS17590 16S rRNA methyltransferase low > 128
Azospirillum sp. SherDot2 0.44 MPMX19_06091 Glycolate permease GlcA 0.50 MPMX19_00577 Ribosomal RNA small subunit methyltransferase E low > 112
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS09780 L-lactate permease 0.17 ABZR87_RS01505 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 80
Ralstonia solanacearum UW163 0.41 UW163_RS15740 L-lactate permease 0.18 UW163_RS07745 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS14070 L-lactate permease 0.18 RALBFv3_RS05880 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 76
Ralstonia solanacearum PSI07 0.41 RPSI07_RS19390 L-lactate permease 0.17 RPSI07_RS11365 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 81
Ralstonia solanacearum GMI1000 0.40 RS_RS04855 L-lactate permease 0.18 RS_RS13825 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 80
Rhodopseudomonas palustris CGA009 0.39 TX73_005835 L-lactate permease 0.36 TX73_005910 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 86
Paraburkholderia graminis OAS925 0.31 ABIE53_002860 lactate permease 0.16 ABIE53_003540 16S rRNA (uracil1498-N3)-methyltransferase low > 113
Burkholderia phytofirmans PsJN 0.30 BPHYT_RS13235 lactate permease 0.16 BPHYT_RS16855 16S rRNA methyltransferase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.30 H281DRAFT_00392 lactate permease 0.16 H281DRAFT_06311 16S rRNA (uracil1498-N3)-methyltransferase low > 103
Dickeya dianthicola 67-19 0.21 HGI48_RS12340 L-lactate permease 0.15 HGI48_RS18490 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 71
Dickeya dianthicola ME23 0.21 DZA65_RS12780 L-lactate permease 0.15 DZA65_RS19625 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 75
Dickeya dadantii 3937 0.20 DDA3937_RS12250 L-lactate permease 0.15 DDA3937_RS18555 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 74
Pseudomonas stutzeri RCH2 0.16 Psest_0955 D,L-lactate:H+ symporter (from data) 0.21 Psest_0305 RNA methyltransferase, RsmE family low > 67
Shewanella amazonensis SB2B 0.16 Sama_2439 L-lactate permease, putative (RefSeq) 0.17 Sama_0575 16S ribosomal RNA methyltransferase RsmE (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.15 CSW01_19030 L-lactate permease 0.15 CSW01_02495 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 62
Shewanella loihica PV-4 0.15 Shew_3135 L-lactate permease (RefSeq) 0.18 Shew_3224 hypothetical protein (RefSeq) low > 60
Shewanella sp. ANA-3 0.15 Shewana3_2904 propionate/L-lactate/D-lactate transporter (from data) 0.18 Shewana3_3444 16S ribosomal RNA methyltransferase RsmE (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.15 MIT1002_02673 L-lactate permease 0.19 MIT1002_03054 Ribosomal RNA small subunit methyltransferase E low > 70
Serratia liquefaciens MT49 0.12 IAI46_20615 L-lactate permease 0.16 IAI46_21385 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 86

Not shown: 6 genomes with orthologs for Rru_A1409 only; 28 genomes with orthologs for Rru_A0571 only