| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.3014.1 | | putative ATPase, AAA+ family protein | insig. | 100 | 100 |
| o | Pseudomonas stutzeri RCH2 | Psest_3416 | | Predicted ATPase (AAA+ superfamily) | cofit | 37 | 98 |
| o | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS08950 | | AAA family ATPase | sig. | 38 | 98 |
| o | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_436 | | Cell division protein FtsH (EC 3.4.24.-) | insig. | 37 | 98 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_2176 | | AAA family ATPase, CDC48 subfamily | insig. | 35 | 58 |
| | Methanococcus maripaludis JJ | MMJJ_RS05340 | | AAA family ATPase | insig. | 30 | 64 |
| | Methanococcus maripaludis S2 | MMP_RS00150 | | AAA family ATPase | sig. | 30 | 64 |
| | Sphingobium sp. HT1-2 | GFF956 | | AAA family ATPase Cdc48 | insig. | 33 | 54 |
| | Pseudomonas stutzeri RCH2 | Psest_0442 | | ATPases of the AAA+ class | strong | 30 | 53 |
| | Pseudomonas sp. DMC3 | GFF4126 | | ATP-dependent zinc metalloprotease FtsH | cofit | 30 | 53 |
| | Bifidobacterium breve UCC2003 | BBR_RS17210 | | 26S protease regulatory subunit | insig. | 34 | 51 |
| | Shewanella loihica PV-4 | Shew_3822 | | ATPase central domain-containing protein (RefSeq) | strong | 34 | 46 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS05830 | | ATP-binding protein | insig. | 31 | 51 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS06085 | | ATP-binding protein | insig. | 31 | 51 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_00540 | | AAA family ATPase | cofit | 30 | 50 |
| | Methanococcus maripaludis JJ | MMJJ_RS04505 | | CDC48 family AAA ATPase | strong | 30 | 55 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS16240 | | ATP-dependent zinc metalloprotease FtsH | no data | 29 | 70 |
| | Methanococcus maripaludis S2 | MMP_RS00985 | | CDC48 family AAA ATPase | strong | 30 | 55 |
| | Azospirillum brasilense Sp245 | AZOBR_RS09215 | | cell division protein FtsH | insig. | 29 | 71 |
| | Azospirillum sp. SherDot2 | MPMX19_00966 | | ATP-dependent zinc metalloprotease FtsH | insig. | 29 | 72 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS09615 | | ATP-binding protein | insig. | 30 | 51 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS04115 | | ATP-dependent zinc metalloprotease FtsH3 | no data | 28 | 70 |
| | Methanococcus maripaludis JJ | MMJJ_RS04505 | | CDC48 family AAA ATPase | strong | 29 | 66 |
| | Methanococcus maripaludis S2 | MMP_RS00985 | | CDC48 family AAA ATPase | strong | 29 | 66 |
| | Cellulophaga baltica 18 | M666_RS05815 | | ATP-binding protein | insig. | 25 | 55 |
| | Xanthobacter sp. DMC5 | GFF300 | | ATP-dependent zinc metalloprotease FtsH | insig. | 32 | 51 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_3580 | | ATPases of the AAA+ class | insig. | 29 | 50 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS09755 | | ATP-dependent zinc metalloprotease FtsH | no data | 28 | 70 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS14105 | | ATP-dependent zinc metalloprotease FtsH | no data | 28 | 70 |
| | Cellulophaga baltica 18 | M666_RS08950 | | ATP-dependent zinc metalloprotease FtsH | no data | 29 | 70 |
| | Variovorax sp. SCN45 | GFF6421 | | ATPase, AAA family | cofit | 34 | 47 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF1960 | | Cell division protein FtsH (EC 3.4.24.-) | cofit | 31 | 61 |
| | Marinobacter adhaerens HP15 | HP15_3074 | | membrane protein containing peptidase M41, FtsH / ATPase, AAA-type, core | no data | 28 | 76 |
| | Methylophilus sp. DMC18 | GFF317 | | ATP-dependent zinc metalloprotease FtsH | no data | 26 | 74 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT4007 | | AAA-metalloprotease FtsH, with ATPase domain (NCBI ptt file) | no data | 27 | 65 |
| | Bosea sp. OAE506 | ABIE41_RS09560 | | ATP-dependent zinc metalloprotease FtsH | no data | 26 | 67 |
| | Rhizobium sp. OAE497 | ABIE40_RS12380 | | AAA family ATPase | insig. | 28 | 58 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_04826 | | ATP-dependent metallopeptidase HflB | no data | 27 | 65 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS03370 | | ATP-binding protein | insig. | 26 | 50 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS14835 | | ATP-binding protein | insig. | 32 | 50 |
| | Marinobacter adhaerens HP15 | HP15_1744 | | AAA ATPase central domain protein | insig. | 29 | 53 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS09155 | | ATP-dependent zinc metalloprotease FtsH | no data | 27 | 65 |
| | Pectobacterium carotovorum WPP14 | HER17_RS18900 | | ATP-binding protein | no data | 27 | 59 |
| | Dinoroseobacter shibae DFL-12 | Dshi_2455 | | AAA ATPase central domain protein (RefSeq) | insig. | 28 | 61 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_1314 | ftsH | FtsH-2 peptidase. Metallo peptidase. MEROPS family M41 | sig. | 30 | 52 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS13915 | | ATPase | sig. | 32 | 47 |
| | Marinobacter adhaerens HP15 | HP15_1355 | | cell division protein FtsH | insig. | 27 | 67 |
| | Dinoroseobacter shibae DFL-12 | Dshi_1115 | | ATP-dependent metalloprotease FtsH (RefSeq) | no data | 27 | 70 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_2427 | | ATP-dependent metalloprotease FtsH | no data | 27 | 70 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS06515 | | ATP-dependent zinc metalloprotease FtsH4 | sig. | 27 | 67 |
| | Azospirillum brasilense Sp245 | AZOBR_RS07570 | | ATP-dependent metalloprotease | no data | 26 | 71 |
| | Variovorax sp. OAS795 | ABID97_RS03385 | | AAA family ATPase | sig. | 32 | 47 |
| | Dechlorosoma suillum PS | Dsui_2646 | | AAA+ family ATPase | no data | 29 | 48 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF4217 | | Cell division protein FtsH (EC 3.4.24.-) | no data | 26 | 74 |
| | Agrobacterium fabrum C58 | Atu3710 | | metalloprotease | no data | 26 | 71 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS17385 | | ATPase AAA | no data | 26 | 58 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.3124.1 | | Cell division protein FtsH (EC 3.4.24.-) | no data | 29 | 67 |
| | Sinorhizobium meliloti 1021 | SMc04459 | | metalloprotease transmembrane protein | no data | 27 | 70 |
| | Azospirillum sp. SherDot2 | MPMX19_00707 | | ATP-dependent zinc metalloprotease FtsH | no data | 26 | 70 |
| | Rhodopseudomonas palustris CGA009 | TX73_005785 | | ATP-dependent zinc metalloprotease FtsH | no data | 26 | 70 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS06945 | | ATP-dependent metalloprotease | no data | 26 | 74 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_442 | | Cell division protein FtsH (EC 3.4.24.-) | no data | 26 | 74 |
| | Rhizobium sp. OAE497 | ABIE40_RS08705 | | ATP-binding protein | insig. | 27 | 53 |
| | Dickeya dianthicola ME23 | DZA65_RS10440 | | ATP-binding protein | insig. | 27 | 50 |
| | Variovorax sp. OAS795 | ABID97_RS17045 | | ATP-dependent zinc metalloprotease FtsH | no data | 26 | 74 |
| | Variovorax sp. SCN45 | GFF369 | | Cell division-associated, ATP-dependent zinc metalloprotease FtsH | no data | 26 | 74 |
| | Rhizobium sp. OAE497 | ABIE40_RS15580 | | ATP-dependent zinc metalloprotease FtsH | no data | 26 | 71 |