| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_4023 | | Cyn operon transcriptional activator | no data | 100 | 100 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_10765 | | LysR family transcriptional regulator | insig. | 98 | 100 |
| | Pseudomonas sp. RS175 | PFR28_04746 | | HTH-type transcriptional regulator DmlR | insig. | 85 | 100 |
| | Pseudomonas sp. S08-1 | OH686_18575 | | Transcriptional regulator, LysR family | insig. | 73 | 100 |
| | Pseudomonas putida KT2440 | PP_2961 | | Transcriptional regulator, LysR family | insig. | 71 | 100 |
| | Pseudomonas sp. DMC3 | GFF2757 | | HTH-type transcriptional regulator DmlR | insig. | 70 | 100 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_19415 | | LysR family transcriptional regulator | insig. | 51 | 98 |
| | Pseudomonas simiae WCS417 | PS417_09485 | | LysR family transcriptional regulator | insig. | 50 | 100 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS08360 | | LysR family transcriptional regulator | insig. | 38 | 100 |
| | Rhodospirillum rubrum S1H | Rru_A2257 | | Transcriptional Regulator, LysR family (NCBI) | strong | 36 | 89 |
| | Shewanella sp. ANA-3 | Shewana3_1836 | | LysR family transcriptional regulator (RefSeq) | insig. | 32 | 96 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_5905 | | Transcriptional regulator, LysR family | insig. | 33 | 89 |
| | Shewanella loihica PV-4 | Shew_2292 | | LysR family transcriptional regulator (RefSeq) | insig. | 36 | 89 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_3607 | | transcriptional regulator, LysR family | insig. | 36 | 89 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3607 | | transcriptional regulator, LysR family | insig. | 36 | 89 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_22295 | | LysR family transcriptional regulator | insig. | 32 | 89 |
| | Bosea sp. OAE506 | ABIE41_RS20280 | | LysR family transcriptional regulator | insig. | 38 | 85 |
| | Shewanella oneidensis MR-1 | SO2053 | | transcriptional regulator, LysR family (NCBI ptt file) | insig. | 31 | 96 |
| | Shewanella loihica PV-4 | Shew_1539 | | LysR family transcriptional regulator (RefSeq) | insig. | 33 | 92 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS01140 | | LysR family transcriptional regulator | cofit | 39 | 85 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS06390 | | LysR family transcriptional regulator | insig. | 34 | 96 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS06390 | | LysR family transcriptional regulator | cofit | 34 | 96 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_4683 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | insig. | 32 | 96 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_3857 | | Transcriptional regulator, LysR family | insig. | 34 | 89 |
| | Pseudomonas sp. DMC3 | GFF2076 | | HTH-type transcriptional regulator DmlR | insig. | 33 | 96 |
| | Dickeya dadantii 3937 | DDA3937_RS00230 | | LysR family transcriptional regulator | insig. | 37 | 89 |
| | Enterobacter sp. TBS_079 | MPMX20_02122 | | HTH-type transcriptional regulator DmlR | sig. | 37 | 98 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01740 | | HTH-type transcriptional regulator DmlR | insig. | 34 | 89 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS02150 | | LysR substrate-binding domain-containing protein | insig. | 37 | 100 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_1366 | | transcriptional regulator, LysR family | insig. | 34 | 91 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_1366 | | transcriptional regulator, LysR family | insig. | 34 | 91 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3107 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | insig. | 32 | 96 |
| | Rahnella sp. WP5 | EX31_RS16730 | | LysR family transcriptional regulator | insig. | 32 | 89 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS27310 | | LysR family transcriptional regulator | no data | 35 | 90 |
| | Pseudomonas sp. DMC3 | GFF943 | | HTH-type transcriptional regulator DmlR | cofit | 34 | 89 |
| | Pseudomonas orientalis W4I3 | QF045_RS09170 | | LysR substrate-binding domain-containing protein | insig. | 34 | 96 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3045 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | strong | 32 | 96 |
| | Lysobacter sp. OAE881 | ABIE51_RS06090 | | LysR family transcriptional regulator | insig. | 40 | 87 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_16575 | | LysR family transcriptional regulator | insig. | 33 | 96 |
| | Pseudomonas putida KT2440 | PP_2534 | | Transcriptional regulator, LysR family | insig. | 41 | 89 |
| | Variovorax sp. SCN45 | GFF7142 | | Transcriptional regulator, LysR family | insig. | 37 | 98 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS26820 | | LysR family transcriptional regulator | insig. | 36 | 89 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02593 | | HTH-type transcriptional regulator DmlR | cofit | 36 | 89 |
| | Pseudomonas sp. RS175 | PFR28_00419 | | HTH-type transcriptional regulator DmlR | strong | 32 | 96 |
| | Pseudomonas sp. BP01 | JOY50_RS23715 | | LysR substrate-binding domain-containing protein | insig. | 35 | 91 |
| | Pseudomonas simiae WCS417 | PS417_06325 | | LysR family transcriptional regulator | strong | 33 | 93 |
| | Azospirillum sp. SherDot2 | MPMX19_05002 | | HTH-type transcriptional regulator DmlR | insig. | 33 | 100 |
| | Pseudomonas stutzeri RCH2 | Psest_1182 | | Transcriptional regulator | strong | 34 | 87 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS07990 | | LysR family transcriptional regulator | insig. | 34 | 89 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS07990 | | LysR family transcriptional regulator | insig. | 34 | 89 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01435 | | HTH-type transcriptional regulator DmlR | cofit | 33 | 96 |
| | Dickeya dadantii 3937 | DDA3937_RS09005 | | LysR family transcriptional regulator | insig. | 38 | 98 |
| | Dickeya dianthicola 67-19 | HGI48_RS19010 | | LysR family transcriptional regulator | insig. | 38 | 98 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_4923 | | transcriptional regulator, LysR family | insig. | 37 | 96 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_4923 | | transcriptional regulator, LysR family | insig. | 37 | 96 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4411 | | Transcriptional regulator, LysR family | no data | 36 | 92 |
| | Pseudomonas putida KT2440 | PP_1615 | | Transcriptional regulator, LysR family | strong | 34 | 91 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_18535 | | glutathione-dependent formaldehyde neutralization regulator | insig. | 33 | 96 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS42300 | gfnR;inference=COORDINATES | glutathione-dependent formaldehyde neutralization regulator | insig. | 33 | 96 |
| | Shewanella oneidensis MR-1 | SOA0165 | | transcriptional regulator, LysR family (NCBI ptt file) | insig. | 32 | 96 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_05925 | | LysR family transcriptional regulator | strong | 31 | 96 |
| | Pectobacterium carotovorum WPP14 | HER17_RS06865 | | LysR family transcriptional regulator | insig. | 30 | 96 |
| | Sphingobium sp. HT1-2 | GFF1839 | | Transcriptional regulator, LysR family | cofit | 34 | 100 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS14825 | gfnR;inference=COORDINATES | glutathione-dependent formaldehyde neutralization regulator | insig. | 33 | 96 |
| | Alteromonas macleodii MIT1002 | MIT1002_02674 | | D-malate degradation protein R | strong | 32 | 89 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_02111 | | transcriptional regulator, LysR family | insig. | 39 | 99 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS18050 | | LysR family transcriptional regulator | insig. | 35 | 89 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS18050 | | LysR family transcriptional regulator | insig. | 35 | 89 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS03985 | | LysR family transcriptional regulator | insig. | 34 | 96 |
| | Ralstonia solanacearum GMI1000 | RS_RS21490 | | LysR family transcriptional regulator | insig. | 33 | 96 |
| | Sinorhizobium meliloti 1021 | SMa2107 | | GstR transcriptional regulator | insig. | 38 | 89 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS08805 | | LysR family transcriptional regulator | insig. | 36 | 89 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS08805 | | LysR family transcriptional regulator | insig. | 36 | 89 |
| | Dickeya dianthicola 67-19 | HGI48_RS21130 | | LysR family transcriptional regulator | insig. | 36 | 87 |
| | Escherichia coli ECOR27 | NOLOHH_02345 | yafC | DNA-binding transcriptional regulator YafC | insig. | 35 | 100 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_03453 | | HTH-type transcriptional regulator DmlR | insig. | 35 | 100 |
| | Paraburkholderia graminis OAS925 | ABIE53_004337 | | DNA-binding transcriptional LysR family regulator | insig. | 38 | 95 |
| | Pseudomonas sp. S08-1 | OH686_18145 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | insig. | 35 | 91 |
| | Paraburkholderia graminis OAS925 | ABIE53_002646 | | DNA-binding transcriptional LysR family regulator | insig. | 34 | 89 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS12315 | | transcriptional regulator | insig. | 34 | 91 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS06700 | | LysR family transcriptional regulator | insig. | 33 | 84 |
| | Ralstonia solanacearum UW163 | UW163_RS06915 | | LysR family transcriptional regulator | insig. | 33 | 84 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS02875 | | LysR family transcriptional regulator | insig. | 38 | 92 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_4305 | | Transcriptional regulator, LysR family | insig. | 33 | 84 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS11850 | | transcriptional regulator | no data | 31 | 100 |
| | Paraburkholderia graminis OAS925 | ABIE53_000562 | | DNA-binding transcriptional LysR family regulator | insig. | 42 | 83 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_5325 | | Transcriptional regulator, LysR family | insig. | 37 | 90 |
| | Dickeya dianthicola ME23 | DZA65_RS22105 | | LysR family transcriptional regulator | insig. | 36 | 87 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS20090 | | LysR family transcriptional regulator | insig. | 34 | 87 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS14890 | | LysR family transcriptional regulator | insig. | 33 | 89 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_2951 | | transcriptional regulator, LysR family | insig. | 33 | 89 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_2951 | | transcriptional regulator, LysR family | insig. | 33 | 89 |
| | Pseudomonas sp. SVBP6 | COO64_RS19755 | | LysR substrate-binding domain-containing protein | insig. | 32 | 96 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1749 | | Cyn operon transcriptional activator | insig. | 37 | 87 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS35795 | | LysR family transcriptional regulator | insig. | 37 | 98 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_17005 | | LysR family transcriptional regulator | insig. | 35 | 90 |
| | Variovorax sp. SCN45 | GFF3618 | | Transcriptional regulator, LysR family | cofit | 34 | 100 |
| | Pseudomonas orientalis W4I3 | QF045_RS13895 | | LysR family transcriptional regulator | insig. | 34 | 89 |
| | Pseudomonas putida KT2440 | PP_3811 | | Transcriptional regulator, LysR family | insig. | 30 | 89 |
| | Variovorax sp. SCN45 | GFF6903 | | Transcriptional regulator, LysR family | insig. | 36 | 88 |