Homologs of GFF99 from Variovorax sp. SCN45

KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

Orth	Species	Gene	Name	Description	Fitness	%Id	Cov
	Variovorax sp. SCN45	GFF99		KEGG: RNA polymerase sigma-70 factor, ECF subfamily	insig.	100	100
	Variovorax sp. SCN45	GFF6854		RNA polymerase ECF-type sigma factor	insig.	44	91
	Variovorax sp. SCN45	GFF784		KEGG: RNA polymerase sigma-70 factor, ECF subfamily	insig.	45	87
	Pseudomonas aeruginosa MRSN321	DY961_RS09155	vreI;inference=COORDINATES	RNA polymerase sigma factor VreI	sig.	40	91
	Pseudomonas aeruginosa PA14	IKLFDK_02765		RNA polymerase sigma factor VreI	insig.	40	91
	Pseudomonas aeruginosa PUPa3	DQ20_RS58865	vreI;inference=COORDINATES	RNA polymerase sigma factor VreI	sig.	40	91
	Variovorax sp. SCN45	GFF791		RNA polymerase sigma factor RpoE	insig.	43	89
	Pseudomonas fluorescens SBW25	PFLU_RS11840		RNA polymerase sigma factor	insig.	37	91
	Pseudomonas fluorescens SBW25-INTG	PFLU_RS11840		RNA polymerase sigma factor	sig.	37	91
	Pseudomonas simiae WCS417	PS417_11245		RNA polymerase subunit sigma-24	insig.	37	91
	Rhodopseudomonas palustris CGA009	TX73_006850		RNA polymerase sigma factor	insig.	40	91
	Variovorax sp. SCN45	GFF1723		Extracytoplasmic function (ECF) sigma factor VreI	no data	38	90
	Dyella japonica UNC79MFTsu3.2	ABZR86_RS05075		RNA polymerase sigma factor	insig.	43	76
	Variovorax sp. SCN45	GFF4182		Extracytoplasmic function (ECF) sigma factor VreI	insig.	41	91
	Pseudomonas sp. DMC3	GFF3003		hypothetical protein	insig.	38	98
	Variovorax sp. SCN45	GFF1727		no description	insig.	38	95
	Variovorax sp. SCN45	GFF4185		RNA polymerase ECF-type sigma factor	insig.	35	86
	Pseudomonas sp. RS175	PFR28_01609		hypothetical protein	sig.	40	89
	Rhodopseudomonas palustris CGA009	TX73_006920		RNA polymerase sigma factor	insig.	31	99
	Rhodopseudomonas palustris CGA009	TX73_006880		sigma-70 family RNA polymerase sigma factor	insig.	38	84
	Cupriavidus basilensis FW507-4G11	RR42_RS14885		DNA-directed RNA polymerase sigma-70 factor	insig.	36	83
	Pseudomonas fluorescens FW300-N2C3	AO356_24740		RNA polymerase subunit sigma-24	insig.	38	85
	Sphingomonas koreensis DSMZ 15582	Ga0059261_2986		RNA polymerase sigma factor, sigma-70 family	insig.	35	83
	Pseudomonas fluorescens FW300-N2E2	Pf6N2E2_641		Extracytoplasmic function (ECF) sigma factor VreI	insig.	37	89
	Variovorax sp. SCN45	GFF794		KEGG: RNA polymerase sigma-70 factor, ECF subfamily	insig.	35	83
	Agrobacterium fabrum C58	Atu5309		ECF family RNA polymerase sigma factor	no data	31	88
	Variovorax sp. SCN45	GFF96		RNA polymerase ECF-type sigma factor	insig.	35	83
	Xanthobacter sp. DMC5	GFF2424		putative RNA polymerase sigma factor FecI	insig.	37	88
	Pseudomonas fluorescens GW456-L13	PfGW456L13_2727		FIG006045: Sigma factor, ECF subfamily	insig.	31	91
o	Pseudomonas sp. SVBP6	COO64_RS11395		RNA polymerase sigma factor	insig.	34	91
	Pseudomonas simiae WCS417	PS417_24420		RNA polymerase sigma70	no data	37	84
	Rhodanobacter denitrificans FW104-10B01	LRK54_RS09455		RNA polymerase sigma factor	insig.	35	79
	Pseudomonas fluorescens SBW25	PFLU_RS24340		sigma-70 family RNA polymerase sigma factor	insig.	32	81
	Pseudomonas fluorescens SBW25-INTG	PFLU_RS24340		sigma-70 family RNA polymerase sigma factor	strong	32	81
	Rhodanobacter denitrificans FW104-10B01	LRK54_RS09420		RNA polymerase sigma factor	sig.	33	73
	Pseudomonas simiae WCS417	PS417_22700		RNA polymerase subunit sigma-24	strong	32	80
	Pseudomonas syringae pv. syringae B728a	Psyr_1107		Sigma-70 region 2	insig.	31	82
	Pseudomonas syringae pv. syringae B728a ΔmexB	Psyr_1107		Sigma-70 region 2	insig.	31	82
	Pseudomonas fluorescens SBW25	PFLU_RS26350		RNA polymerase sigma factor	insig.	35	84
	Pseudomonas fluorescens SBW25-INTG	PFLU_RS26350		RNA polymerase sigma factor	sig.	35	84
	Pseudomonas fluorescens FW300-N1B4	Pf1N1B4_604		FIG006045: Sigma factor, ECF subfamily	insig.	30	82
	Dechlorosoma suillum PS	Dsui_0621		RNA polymerase sigma factor, sigma-70 family	insig.	32	77
	Pseudomonas sp. SVBP6	COO64_RS16360		RNA polymerase sigma factor	sig.	32	82
	Rhodospirillum rubrum S1H	Rru_A2372		Sigma-24 (FecI) (NCBI)	insig.	32	85
	Pseudomonas lactucae CFBP13502	GEMAOFIL_04694		ECF RNA polymerase sigma factor SigE	cofit	31	82
	Pseudomonas orientalis W4I3	QF045_RS24870		sigma-70 family RNA polymerase sigma factor	insig.	31	82
	Rhodospirillum rubrum S1H	Rru_A1438		Sigma-24 (FecI) (NCBI)	cofit	29	83
o	Pseudomonas sp. BP01	JOY50_RS15495		RNA polymerase sigma factor	insig.	33	87
	Pseudomonas sp. RS175	PFR28_02540		putative RNA polymerase sigma factor FecI	insig.	34	81
	Azospirillum sp. SherDot2	MPMX19_03088		putative RNA polymerase sigma factor FecI	insig.	32	91
	Pseudomonas fluorescens FW300-N2C3	AO356_05230		RNA polymerase subunit sigma-24	insig.	31	82
	Pseudomonas fluorescens FW300-N2E3	AO353_03435		RNA polymerase subunit sigma-24	insig.	29	82
	Pseudomonas fluorescens FW300-N2E2	Pf6N2E2_398		FIG006045: Sigma factor, ECF subfamily	insig.	34	81
	Pseudomonas sp. BP01	JOY50_RS11380		RNA polymerase sigma factor	insig.	31	82
	Pseudomonas putida KT2440	PP_1008		RNA polymerase subunit sigma-24	strong	31	82
	Pseudomonas putida KT2440	PP_4608		RNA polymerase sigma-70 factor, ECF subfamily	insig.	33	87
	Pseudomonas sp. BP01	JOY50_RS12755		sigma-70 family RNA polymerase sigma factor	insig.	32	88
	Pseudomonas fluorescens FW300-N2C3	AO356_22495		RNA polymerase subunit sigma-24	insig.	34	81
	Pseudomonas fluorescens FW300-N2E3	AO353_04915		RNA polymerase subunit sigma-24	insig.	32	91
	Pseudomonas fluorescens SBW25	PFLU_RS05190		RNA polymerase sigma factor	insig.	32	86
	Pseudomonas fluorescens SBW25-INTG	PFLU_RS05190		RNA polymerase sigma factor	insig.	32	86
	Azospirillum brasilense Sp245	AZOBR_RS27315		RNA polymerase sigma 70	insig.	31	91
	Pseudomonas fluorescens GW456-L13	PfGW456L13_1886		FIG006045: Sigma factor, ECF subfamily	insig.	31	76
	Pseudomonas fluorescens FW300-N2E2	Pf6N2E2_2900		FIG006045: Sigma factor, ECF subfamily	insig.	30	82
	Pseudomonas sp. DMC3	GFF5154		hypothetical protein	insig.	29	82
	Pseudomonas orientalis W4I3	QF045_RS09635		RNA polymerase sigma factor	insig.	32	86
	Pseudomonas orientalis W4I3	QF045_RS08105		RNA polymerase sigma factor	insig.	31	86
	Pseudomonas fluorescens GW456-L13	PfGW456L13_4951		FIG006045: Sigma factor, ECF subfamily	insig.	31	91
	Pseudomonas putida KT2440	PP_4244		alternative sigma factor	sig.	29	90
	Pseudomonas aeruginosa MRSN321	DY961_RS15880		RNA polymerase sigma factor	sig.	33	88
	Pseudomonas aeruginosa PA14	IKLFDK_17505		RNA polymerase subunit sigma-70	insig.	33	88
	Pseudomonas sp. DMC3	GFF1893		putative RNA polymerase sigma factor FecI	insig.	31	87
	Pseudomonas simiae WCS417	PS417_05120		RNA polymerase subunit sigma-24	insig.	31	86
	Pseudomonas stutzeri RCH2	Psest_0650		RNA polymerase sigma factor, sigma-70 family	insig.	32	77
	Pseudomonas aeruginosa MRSN321	DY961_RS18835		RNA polymerase sigma factor	sig.	30	91
	Pseudomonas aeruginosa PA14	IKLFDK_06170		RNA polymerase subunit sigma	no data	30	91
	Pseudomonas aeruginosa PUPa3	DQ20_RS52975		RNA polymerase sigma factor	insig.	30	91
	Sphingobium sp. HT1-2	GFF5333		sigma factor	cofit	29	77
	Pseudomonas simiae WCS417	PS417_06880		RNA polymerase sigma factor	insig.	31	84
	Azospirillum brasilense Sp245	AZOBR_RS26615		RNA polymerase	insig.	30	89
	Pseudomonas aeruginosa PUPa3	DQ20_RS41200		RNA polymerase sigma factor	insig.	33	87
	Pseudomonas sp. BP01	JOY50_RS02475		sigma-70 family RNA polymerase sigma factor	no data	32	88
	Rhodopseudomonas palustris CGA009	TX73_012350		RNA polymerase sigma factor	insig.	32	80
	Pseudomonas fluorescens SBW25	PFLU_RS06940		sigma-70 family RNA polymerase sigma factor	insig.	31	82
	Pseudomonas fluorescens SBW25-INTG	PFLU_RS06940		sigma-70 family RNA polymerase sigma factor	sig.	31	82
	Pseudomonas fluorescens FW300-N2E2	Pf6N2E2_5307		FIG006045: Sigma factor, ECF subfamily	strong	31	81
	Pseudomonas lactucae CFBP13502	GEMAOFIL_01230		putative RNA polymerase sigma factor FecI	insig.	30	86
	Parabacteroides merdae CL09T00C40	HMPREF1078_RS05575		RNA polymerase sigma-70 factor	insig.	29	77
	Herbaspirillum seropedicae SmR1	HSERO_RS11705		extracytoplasmic-function sigma-70 factor	insig.	28	88
	Pseudomonas sp. SVBP6	COO64_RS03795		RNA polymerase sigma factor	insig.	29	76
	Pseudomonas putida KT2440	PP_2192		putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein	insig.	32	88
	Pseudomonas fluorescens FW300-N2C3	AO356_16910		RNA polymerase subunit sigma	insig.	31	81
	Pseudomonas sp. BP01	JOY50_RS19220		RNA polymerase sigma factor	insig.	30	87
	Pseudomonas stutzeri RCH2	Psest_3456		RNA polymerase sigma factor, sigma-70 family	insig.	34	73
	Azospirillum sp. SherDot2	MPMX19_03247		putative RNA polymerase sigma factor FecI	insig.	30	77
	Dechlorosoma suillum PS	Dsui_1673		RNA polymerase sigma factor, sigma-70 family	no data	30	84
	Pseudomonas sp. SVBP6	COO64_RS16380		RNA polymerase sigma factor	insig.	31	77
	Sphingobium sp. HT1-2	GFF4091		hypothetical protein	insig.	30	77
	Pseudomonas sp. RS175	PFR28_00559		ECF RNA polymerase sigma factor SigE	insig.	31	82
	Pectobacterium carotovorum WPP14	HER17_RS14055		sigma-70 family RNA polymerase sigma factor	insig.	30	75