| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Phaeobacter inhibens DSM 17395 | PGA1_c04230 | | putative phosphonates metabolism transcriptional regulator phnF | strong | 100 | 100 |
| o | Cupriavidus basilensis FW507-4G11 | RR42_RS28080 | | GntR family transcriptional regulator | insig. | 39 | 96 |
| o | Acidovorax sp. GW101-3H11 | Ac3H11_4540 | | Transcriptional regulator PhnF | insig. | 38 | 95 |
| o | Bosea sp. OAE506 | ABIE41_RS07695 | | phosphonate metabolism transcriptional regulator PhnF | insig. | 36 | 93 |
| o | Rhodopseudomonas palustris CGA009 | TX73_003600 | | phosphonate metabolism transcriptional regulator PhnF | strong | 38 | 94 |
| o | Variovorax sp. SCN45 | GFF6262 | | Transcriptional regulator PhnF | insig. | 37 | 95 |
| o | Xanthobacter sp. DMC5 | GFF3438 | | HTH-type transcriptional repressor NagR | insig. | 40 | 93 |
| o | Paraburkholderia sabiae LMG 24235 | QEN71_RS14195 | | phosphonate metabolism transcriptional regulator PhnF | sig. | 36 | 95 |
| o | Sinorhizobium meliloti 1021 | SM_b20758 | | ArsR family transcriptional regulator | insig. | 37 | 94 |
| o | Burkholderia phytofirmans PsJN | BPHYT_RS29455 | | GntR family transcriptional regulator | no data | 38 | 95 |
| o | Rhizobium sp. OAE497 | ABIE40_RS00575 | | phosphonate metabolism transcriptional regulator PhnF | insig. | 34 | 95 |
| o | Agrobacterium fabrum C58 | Atu0182 | | transcriptional regulator, GntR family | insig. | 34 | 95 |
| o | Dickeya dadantii 3937 | DDA3937_RS07595 | | phosphonate metabolism transcriptional regulator PhnF | insig. | 32 | 94 |
| o | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS01645 | | phosphonate metabolism transcriptional regulator PhnF | cofit | 31 | 94 |
| o | Pantoea sp. MT58 | IAI47_07750 | | phosphonate metabolism transcriptional regulator PhnF | insig. | 30 | 94 |
| o | Rahnella sp. WP5 | EX31_RS08405 | | phosphonate metabolism transcriptional regulator PhnF | insig. | 32 | 94 |
| o | Dickeya dianthicola 67-19 | HGI48_RS07445 | | phosphonate metabolism transcriptional regulator PhnF | insig. | 32 | 94 |
| o | Dickeya dianthicola ME23 | DZA65_RS07950 | | phosphonate metabolism transcriptional regulator PhnF | insig. | 32 | 94 |
| o | Serratia liquefaciens MT49 | IAI46_02110 | | phosphonate metabolism transcriptional regulator PhnF | insig. | 31 | 93 |
| | Azospirillum sp. SherDot2 | MPMX19_03609 | | HTH-type transcriptional repressor NagR | insig. | 35 | 93 |
| o | Klebsiella pneumoniae MKP103 | KDGMDA_10675 | | phosphonate metabolism transcriptional regulator PhnF | insig. | 31 | 93 |
| o | Escherichia coli BL21 | ECD_03974 | | putative DNA-binding transcriptional regulator of phosphonate uptake and biodegradation | insig. | 33 | 93 |
| o | Escherichia coli ECOR27 | NOLOHH_04905 | phnF | phosphonate metabolism transcriptional regulator PhnF | insig. | 33 | 93 |
| o | Escherichia coli ECOR38 | HEPCGN_11275 | phnF | phosphonate metabolism transcriptional regulator PhnF | insig. | 33 | 93 |
| o | Escherichia coli ECRC100 | OKFHMN_12645 | phnF | phosphonate metabolism transcriptional regulator PhnF | insig. | 33 | 93 |
| o | Escherichia coli ECRC101 | MCAODC_03155 | phnF | phosphonate metabolism transcriptional regulator PhnF | insig. | 33 | 93 |
| o | Escherichia coli ECRC102 | NIAGMN_10490 | phnF | phosphonate metabolism transcriptional regulator PhnF | insig. | 33 | 93 |
| o | Escherichia coli ECRC62 | BNILDI_06590 | phnF | phosphonate metabolism transcriptional regulator PhnF | insig. | 33 | 93 |
| o | Escherichia coli ECRC98 | JDDGAC_16280 | phnF | phosphonate metabolism transcriptional regulator PhnF | insig. | 33 | 93 |
| o | Escherichia coli ECRC99 | KEDOAH_15520 | phnF | phosphonate metabolism transcriptional regulator PhnF | no data | 33 | 93 |
| o | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_03942 | | putative transcriptional regulator PhnF | insig. | 33 | 93 |
| o | Escherichia coli BW25113 | b4102 | phnF | predicted DNA-binding transcriptional regulator of phosphonate uptake and biodegradation (NCBI) | strong | 33 | 93 |
| o | Escherichia coli Nissle 1917 | ECOLIN_RS23750 | | phosphonate metabolism transcriptional regulator PhnF | insig. | 32 | 93 |
| | Sphingobium sp. HT1-2 | GFF4677 | | Predicted transcriptional regulator of N-Acetylglucosamine utilization, GntR family | insig. | 33 | 92 |
| o | Escherichia fergusonii Becca | EFB2_04480 | | putative transcriptional regulator PhnF | insig. | 33 | 93 |
| o | Pseudomonas aeruginosa MRSN321 | DY961_RS16030 | phnF;go_function=DNA-binding | phosphonate metabolism transcriptional regulator PhnF | strong | 32 | 94 |
| o | Pseudomonas aeruginosa PA14 | IKLFDK_17355 | | phosphonate metabolism transcriptional regulator PhnF | insig. | 32 | 94 |
| o | Pseudomonas aeruginosa PUPa3 | DQ20_RS41050 | phnF;go_function=DNA-binding | phosphonate metabolism transcriptional regulator PhnF | sig. | 32 | 94 |
| o | Klebsiella michiganensis M5al | BWI76_RS02230 | | phosphonate metabolism transcriptional regulator PhnF | insig. | 32 | 83 |
| o | Enterobacter sp. TBS_079 | MPMX20_00322 | | putative transcriptional regulator PhnF | insig. | 31 | 93 |
| o | Enterobacter asburiae PDN3 | EX28DRAFT_4203 | | phosphonates metabolism transcriptional regulator PhnF | insig. | 33 | 83 |
| | Variovorax sp. SCN45 | GFF4945 | | probable GntR-family transcriptional regulator | cofit | 31 | 89 |
| o | Dechlorosoma suillum PS | Dsui_2210 | | transcriptional regulator | strong | 30 | 91 |
| | Rahnella sp. WP5 | EX31_RS13550 | | GntR family transcriptional regulator | insig. | 27 | 95 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_3971 | | Transcriptional regulators | insig. | 28 | 88 |
| | Escherichia coli BL21 | ECD_03225 | | putative DNA-binding transcriptional regulator | sig. | 27 | 91 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_00328 | | putative fructoselysine utilization operon transcriptional repressor | insig. | 27 | 91 |
| | Escherichia coli BW25113 | b3375 | yhfR | putative transcriptional regulator (VIMSS) | strong | 27 | 91 |
| | Escherichia coli ECRC100 | OKFHMN_17145 | phoB | transcriptional regulator PhoB | cofit | 27 | 91 |
| | Escherichia coli ECRC101 | MCAODC_07675 | phoB | transcriptional regulator PhoB | insig. | 27 | 91 |
| | Escherichia coli ECRC102 | NIAGMN_14915 | phoB | transcriptional regulator PhoB | cofit | 27 | 91 |
| | Escherichia coli ECRC98 | JDDGAC_20775 | phoB | transcriptional regulator PhoB | insig. | 27 | 91 |
| | Escherichia coli ECRC99 | KEDOAH_10995 | phoB | transcriptional regulator PhoB | no data | 27 | 91 |
| | Enterobacter sp. TBS_079 | MPMX20_00018 | | Mannosyl-D-glycerate transport/metabolism system repressor MngR | insig. | 29 | 88 |
| o | Pseudomonas stutzeri RCH2 | Psest_0097 | | phosphonates metabolism transcriptional regulator PhnF | insig. | 33 | 87 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS00670 | | UTRA domain-containing protein | insig. | 29 | 94 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_16615 | | MFS transporter | insig. | 29 | 94 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS40365 | | UTRA domain-containing protein | insig. | 29 | 94 |
| o | Pseudomonas syringae pv. syringae B728a | Psyr_2250 | | transcriptional regulator, GntR family | no data | 32 | 88 |
| o | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_2250 | | transcriptional regulator, GntR family | insig. | 32 | 88 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_08590 | | GntR family transcriptional regulator | insig. | 27 | 88 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS16655 | | GntR family transcriptional regulator | sig. | 28 | 91 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS22760 | | GntR family transcriptional regulator | sig. | 34 | 93 |
| o | Ralstonia solanacearum GMI1000 | RS_RS17570 | | GntR family transcriptional regulator | insig. | 27 | 91 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_02181 | | Mannosyl-D-glycerate transport/metabolism system repressor MngR | insig. | 25 | 89 |
| o | Pseudomonas fluorescens SBW25 | PFLU_RS08755 | | phosphonate metabolism transcriptional regulator PhnF | insig. | 29 | 93 |
| o | Pseudomonas fluorescens SBW25-INTG | PFLU_RS08755 | | phosphonate metabolism transcriptional regulator PhnF | insig. | 29 | 93 |
| | Klebsiella michiganensis M5al | BWI76_RS27890 | | GntR family transcriptional regulator | sig. | 27 | 88 |
| o | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS22955 | | GntR family transcriptional regulator | insig. | 27 | 91 |
| o | Ralstonia solanacearum UW163 | UW163_RS23575 | | GntR family transcriptional regulator | insig. | 27 | 91 |
| | Lysobacter sp. OAE881 | ABIE51_RS01625 | | GntR family transcriptional regulator | sig. | 32 | 92 |
| | Escherichia coli BW25113 | b0730 | mngR | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | insig. | 26 | 95 |
| o | Ralstonia solanacearum PSI07 | RPSI07_RS00285 | | GntR family transcriptional regulator | insig. | 27 | 91 |
| | Rhizobium sp. OAE497 | ABIE40_RS18580 | | GntR family transcriptional regulator | cofit | 30 | 91 |
| | Paraburkholderia graminis OAS925 | ABIE53_002555 | | GntR family transcriptional regulator | no data | 29 | 91 |
| | Escherichia fergusonii Becca | EFB2_02423 | | Mannosyl-D-glycerate transport/metabolism system repressor MngR | insig. | 25 | 89 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS08770 | | GntR family transcriptional regulator | no data | 25 | 89 |
| | Escherichia coli ECOR27 | NOLOHH_18685 | | GntR family transcriptional regulator | no data | 25 | 90 |
| | Escherichia coli ECRC62 | BNILDI_17175 | | GntR family transcriptional regulator | insig. | 25 | 90 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_0513 | | transcriptional regulator, GntR family (RefSeq) | sig. | 27 | 88 |
| | Escherichia coli ECOR38 | HEPCGN_26880 | | GntR family transcriptional regulator | insig. | 25 | 90 |
| o | Pseudomonas segetis P6 | ACVTMO_RS08865 | | UTRA domain-containing protein | insig. | 28 | 94 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_23540 | | GntR family transcriptional regulator | insig. | 29 | 89 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS18335 | | GntR family transcriptional regulator | insig. | 30 | 91 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS30820 | | GntR family transcriptional regulator | insig. | 30 | 88 |
| | Sphingobium sp. HT1-2 | GFF1229 | | Predicted transcriptional regulator of N-Acetylglucosamine utilization, GntR family | cofit | 29 | 91 |
| | Escherichia coli BL21 | ECD_00689 | | transcriptional repressor for the mannosyl-D-glycerate catabolic operon | insig. | 26 | 95 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_02987 | | Mannosyl-D-glycerate transport/metabolism system repressor MngR | insig. | 26 | 95 |
| | Escherichia coli ECOR27 | NOLOHH_23295 | mngR | mannosyl-D-glycerate transport/metabolism system transcriptional repressor MngR | insig. | 26 | 95 |
| | Escherichia coli ECRC62 | BNILDI_21290 | mngR | mannosyl-D-glycerate transport/metabolism system transcriptional repressor MngR | insig. | 26 | 95 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_1638 | | transcriptional regulator, GntR family | strong | 28 | 92 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_04097 | | transcriptional regulator, GntR family | sig. | 34 | 61 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS16925 | | histidine utilization repressor | sig. | 30 | 93 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS02910 | | GntR family transcriptional regulator | sig. | 34 | 61 |
| | Pseudomonas sp. S08-1 | OH686_23055 | | Putative alkanesulfonate metabolism utilization regulator | insig. | 27 | 91 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_00558 | | transcriptional regulator, GntR family | insig. | 28 | 91 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS06720 | | UTRA domain-containing protein | insig. | 28 | 93 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_05280 | | MFS transporter | insig. | 28 | 93 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS46105 | | UTRA domain-containing protein | insig. | 28 | 93 |
| | Paraburkholderia graminis OAS925 | ABIE53_003331 | | GntR family transcriptional regulator | strong | 34 | 61 |