| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Pseudomonas stutzeri RCH2 | Psest_3052 | | Site-specific recombinase XerD | insig. | 100 | 100 |
| o | Pseudomonas aeruginosa PUPa3 | DQ20_RS43980 | | tyrosine-type recombinase/integrase | insig. | 69 | 98 |
| o | Pseudomonas aeruginosa MRSN321 | DY961_RS08885 | | tyrosine-type recombinase/integrase | cofit | 70 | 97 |
| | Pseudomonas stutzeri RCH2 | Psest_4123 | | Site-specific recombinase XerD | sig. | 51 | 99 |
| o | Pseudomonas aeruginosa PA14 | IKLFDK_05595 | | integrase | insig. | 50 | 98 |
| | Marinobacter adhaerens HP15 | HP15_3093 | | phage integrase family protein | insig. | 48 | 96 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_03615 | | Putative integrase | sig. | 52 | 71 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS01250 | | integrase | insig. | 42 | 98 |
| | Pectobacterium carotovorum WPP14 | HER17_RS18625 | | tyrosine-type recombinase/integrase | cofit | 40 | 97 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_05430 | xerD | integrase | cofit | 39 | 97 |
| | Erwinia tracheiphila SCR3 | LU632_RS03480 | | tyrosine-type recombinase/integrase | insig. | 39 | 97 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS11660 | | site-specific integrase | no data | 38 | 97 |
| | Dickeya dianthicola 67-19 | HGI48_RS02890 | | tyrosine-type recombinase/integrase | insig. | 39 | 97 |
| | Pantoea sp. MT58 | IAI47_02995 | | tyrosine-type recombinase/integrase | insig. | 38 | 98 |
| | Pseudomonas segetis P6 | ACVTMO_RS04260 | | phage integrase | insig. | 39 | 97 |
| | Pseudomonas segetis P6 | ACVTMO_RS21410 | | phage integrase | insig. | 39 | 97 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_02862 | | Tyrosine recombinase XerD | insig. | 39 | 98 |
| | Escherichia fergusonii Becca | EFB2_03259 | | Tyrosine recombinase XerC | insig. | 39 | 98 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_17435 | | integrase | insig. | 39 | 98 |
| | Enterobacter sp. TBS_079 | MPMX20_03950 | | Tyrosine recombinase XerC | strong | 38 | 95 |
| | Pectobacterium carotovorum WPP14 | HER17_RS07965 | | tyrosine-type recombinase/integrase | insig. | 40 | 97 |
| | Dickeya dadantii 3937 | DDA3937_RS04115 | | site-specific integrase | insig. | 38 | 98 |
| | Dickeya dianthicola ME23 | DZA65_RS04005 | | site-specific integrase | insig. | 38 | 98 |
| | Pectobacterium carotovorum WPP14 | HER17_RS05350 | | site-specific integrase | insig. | 38 | 98 |
| | Klebsiella michiganensis M5al | BWI76_RS09185 | | integrase | insig. | 38 | 98 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_01645 | | Integrase | no data | 37 | 97 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_27510 | | Integrase | no data | 37 | 97 |
| | Erwinia tracheiphila SCR3 | LU632_RS01475 | | tyrosine-type recombinase/integrase | sig. | 37 | 97 |
| | Escherichia coli ECRC62 | BNILDI_11500 | xerD | integrase | cofit | 37 | 98 |
| | Escherichia coli BL21 | ECD_00815 | | integrase for prophage | insig. | 39 | 91 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS55485 | | tyrosine-type recombinase/integrase | insig. | 41 | 95 |
| | Escherichia coli ECRC102 | NIAGMN_02040 | xerD | integrase | insig. | 37 | 97 |
| | Escherichia coli ECRC98 | JDDGAC_00600 | xerD | integrase | insig. | 38 | 97 |
| | Escherichia coli ECRC100 | OKFHMN_26010 | xerD | integrase | insig. | 37 | 97 |
| | Escherichia coli ECRC101 | MCAODC_19380 | xerD | integrase | insig. | 37 | 97 |
| | Escherichia coli ECRC99 | KEDOAH_02080 | xerD | integrase | no data | 37 | 97 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_02490 | | integrase | insig. | 36 | 98 |
| | Pseudomonas segetis P6 | ACVTMO_RS06550 | | phage integrase | insig. | 40 | 95 |
| o | Enterobacter asburiae PDN3 | EX28DRAFT_0878 | | Site-specific recombinase XerD | insig. | 36 | 98 |
| | Pseudomonas stutzeri RCH2 | Psest_2903 | | Site-specific recombinase XerD | insig. | 39 | 95 |
| | Escherichia coli ECRC101 | MCAODC_20995 | int | Integrase | insig. | 36 | 98 |
| | Pseudomonas sp. S08-1 | OH686_07985 | | Phage integrase | cofit | 39 | 92 |
| | Rahnella sp. WP5 | EX31_RS18465 | | tyrosine-type recombinase/integrase | insig. | 35 | 98 |
| | Escherichia coli ECOR38 | HEPCGN_04445 | xerD | integrase | insig. | 40 | 80 |
| | Escherichia coli ECRC98 | JDDGAC_09320 | | integrase | strong | 35 | 98 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_11165 | | integrase | insig. | 35 | 97 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_25970 | | Tyr recombinase domain-containing protein | cofit | 32 | 85 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_01510 | | Integrase | cofit | 37 | 65 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_23350 | | integrase | no data | 42 | 49 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_29580 | | putative bacteriophage integrase | no data | 53 | 33 |
| | Erwinia tracheiphila SCR3 | LU632_RS21160 | | tyrosine-type recombinase/integrase | no data | 39 | 50 |
| | Pseudomonas sp. S08-1 | OH686_16965 | | hypothetical protein' product='hypothetical protein | insig. | 57 | 27 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_25455 | | Site-specific recombinase phage integrase family protein | cofit | 43 | 34 |
| | Escherichia coli ECOR38 | HEPCGN_26815 | xerD | integrase | insig. | 64 | 20 |
| | Sinorhizobium meliloti 1021 | SMc02397 | | integrase | insig. | 31 | 65 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU2197 | | site-specific recombinase, phage integrase family (TIGR) | insig. | 27 | 62 |
| | Agrobacterium fabrum C58 | Atu1194 | | phage-related integrase | insig. | 22 | 90 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_25445 | | Phage integrase N-terminal SAM-like domain | cofit | 28 | 41 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS00045 | | site-specific integrase | insig. | 26 | 89 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS19880 | | site-specific tyrosine recombinase XerD | cofit | 28 | 76 |
| | Cellulophaga baltica 18 | M666_RS09150 | | tyrosine-type recombinase/integrase | sig. | 25 | 64 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_0827 | | Site-specific recombinase XerD | insig. | 25 | 60 |
| | Sphingobium sp. HT1-2 | GFF3220 | | Phage (Mu-like) virion morphogenesis protein | cofit | 24 | 69 |
| | Azospirillum sp. SherDot2 | MPMX19_02110 | | Tyrosine recombinase XerC | no data | 24 | 63 |
| | Shewanella oneidensis MR-1 | SO_A0045 | | site-specific recombinase, phage integrase family (NCBI) | insig. | 27 | 59 |
| | Bifidobacterium breve UCC2003 | BBR_RS16755 | | site-specific tyrosine recombinase XerD | strong | 52 | 13 |
| | Pseudomonas sp. DMC3 | GFF370 | | Tyrosine recombinase XerC | cofit | 23 | 65 |
| | Sphingobium sp. HT1-2 | GFF251 | | Site-specific tyrosine recombinase XerC | cofit | 29 | 39 |
| | Dinoroseobacter shibae DFL-12 | Dshi_0395 | | integrase family protein (RefSeq) | insig. | 29 | 59 |
| | Sphingobium sp. HT1-2 | GFF2416 | | Site-specific tyrosine recombinase XerD | strong | 26 | 55 |
| | Marinobacter adhaerens HP15 | HP15_762 | | site-specific tyrosine recombinase XerD | insig. | 24 | 67 |
| | Rhodopseudomonas palustris CGA009 | TX73_000945 | | tyrosine recombinase XerC | sig. | 30 | 39 |
| | Rhodospirillum rubrum S1H | Rru_A1220 | | Phage integrase (NCBI) | no data | 28 | 47 |
| | Acinetobacter baumannii LAC-4 | RR41_RS04465 | | tyrosine recombinase | no data | 26 | 38 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS21485 | | tyrosine recombinase XerC | no data | 26 | 61 |
| | Azospirillum brasilense Sp245 | AZOBR_RS03240 | | recombinase XerD | insig. | 26 | 49 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c00260 | | putative phage integrase, catalytic core | insig. | 29 | 47 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_09695 | | integrase | strong | 28 | 51 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_00850 | | site-specific tyrosine recombinase XerD | no data | 26 | 61 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU1757 | | site-specific recombinase, phage integrase family (TIGR) | insig. | 25 | 62 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS15025 | | tyrosine recombinase XerC | strong | 24 | 72 |
| | Azospirillum brasilense Sp245 | AZOBR_RS03965 | | tyrosine recombinase XerC | no data | 29 | 30 |
| | Sinorhizobium meliloti 1021 | SMa1619 | | integrase/recombinase | no data | 29 | 64 |
| | Sinorhizobium meliloti 1021 | SMa2187 | | Integrase/recombinase | no data | 29 | 64 |
| | Azospirillum brasilense Sp245 | AZOBR_RS24420 | | integrase | insig. | 28 | 57 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS09520 | | site-specific tyrosine recombinase XerD | sig. | 24 | 61 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c05760 | | putative tyrosine recombinase XerC | strong | 26 | 64 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3700 | | integrase family protein (RefSeq) | insig. | 25 | 66 |
| | Methylophilus sp. DMC18 | GFF1535 | | Tyrosine recombinase XerC | insig. | 27 | 38 |
| | Caulobacter crescentus NA1000 | CCNA_03101 | | site-specific tyrosine recombinase XerD | strong | 42 | 16 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_03101 | | site-specific tyrosine recombinase XerD | cofit | 42 | 16 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_2764 | | Site-specific recombinase XerD | sig. | 28 | 39 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS10220 | | site-specific tyrosine recombinase XerD | insig. | 26 | 47 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS00625 | | tyrosine recombinase XerC | cofit | 23 | 68 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_15325 | xerC | tyrosine recombinase XerC | insig. | 26 | 45 |
| | Acinetobacter radioresistens SK82 | MPMX26_02230 | | Tyrosine recombinase XerC | no data | 26 | 38 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_19035 | | integrase | no data | 24 | 66 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_09050 | | recombinase XerC | sig. | 24 | 65 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU2828 | | site-specific recombinase, phage integrase family (TIGR) | insig. | 28 | 59 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_18560 | | hypothetical protein | insig. | 28 | 39 |