Homologs of Shew_1033 from Shewanella loihica PV-4

putative radical SAM protein (RefSeq)
SEED: COG1242: Predicted Fe-S oxidoreductase

74 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella loihica PV-4 Shew_1033 putative radical SAM protein (RefSeq) insig. 100 100
o Shewanella sp. ANA-3 Shewana3_3048 putative radical SAM protein (RefSeq) insig. 71 91
o Shewanella oneidensis MR-1 SO1326 conserved hypothetical protein (NCBI ptt file) insig. 71 91
o Shewanella amazonensis SB2B Sama_0858 hypothetical protein (RefSeq) insig. 59 90
o Serratia liquefaciens MT49 IAI46_22340 TIGR01212 family radical SAM protein insig. 58 90
o Vibrio cholerae E7946 ATCC 55056 CSW01_12015 TIGR01212 family radical SAM protein insig. 56 92
o Dickeya dadantii 3937 DDA3937_RS01670 TIGR01212 family radical SAM protein insig. 57 91
o Pectobacterium carotovorum WPP14 HER17_RS19905 TIGR01212 family radical SAM protein cofit 56 91
o Dickeya dianthicola 67-19 HGI48_RS01565 TIGR01212 family radical SAM protein insig. 56 91
o Dickeya dianthicola ME23 DZA65_RS01640 TIGR01212 family radical SAM protein insig. 56 91
o Klebsiella michiganensis M5al BWI76_RS25305 TIGR01212 family radical SAM protein insig. 56 90
o Escherichia coli BL21 ECD_03076 putative Fe-S oxidoreductase, Radical SAM superfamily protein insig. 55 91
o Escherichia coli ECRC100 OKFHMN_17890 yhcC TIGR01212 family radical SAM protein cofit 55 91
o Escherichia coli ECRC101 MCAODC_08410 yhcC TIGR01212 family radical SAM protein insig. 55 91
o Escherichia coli ECRC102 NIAGMN_15650 yhcC TIGR01212 family radical SAM protein insig. 55 91
o Escherichia coli ECRC62 BNILDI_01845 yhcC TIGR01212 family radical SAM protein insig. 55 91
o Escherichia coli ECRC98 JDDGAC_21515 yhcC TIGR01212 family radical SAM protein insig. 55 91
o Escherichia coli ECRC99 KEDOAH_10260 yhcC TIGR01212 family radical SAM protein no data 55 91
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00489 hypothetical protein insig. 55 91
o Escherichia coli BW25113 b3211 yhcC predicted Fe-S oxidoreductase (NCBI) insig. 55 91
o Escherichia coli ECOR27 NOLOHH_09690 yhcC TIGR01212 family radical SAM protein insig. 55 91
o Escherichia coli Nissle 1917 ECOLIN_RS18470 TIGR01212 family radical SAM protein insig. 55 91
o Escherichia fergusonii Becca EFB2_00612 hypothetical protein insig. 55 91
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2955 COG1242: Predicted Fe-S oxidoreductase insig. 55 91
o Enterobacter sp. TBS_079 MPMX20_04125 hypothetical protein insig. 52 94
o Escherichia coli ECOR38 HEPCGN_16765 yhcC TIGR01212 family radical SAM protein insig. 55 91
o Enterobacter asburiae PDN3 EX28DRAFT_3274 radical SAM protein, TIGR01212 family insig. 53 94
o Klebsiella pneumoniae MKP103 KDGMDA_06140 TIGR01212 family radical SAM protein insig. 56 88
  Desulfovibrio vulgaris Miyazaki F DvMF_2819 conserved hypothetical radical SAM protein (RefSeq) insig. 42 83
o Fusobacterium nucleatum SB010 HUW76_06060 TIGR01212 family radical SAM protein cofit 34 87
o Bacteroides ovatus ATCC 8483 BACOVA_04934 radical SAM protein, TIGR01212 family insig. 35 92
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS14980 TIGR01212 family radical SAM protein insig. 38 87
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS16795 TIGR01212 family radical SAM protein insig. 38 91
o Bacteroides stercoris CC31F HMPREF1181_RS08775 TIGR01212 family radical SAM protein insig. 35 87
o Bacteroides thetaiotaomicron VPI-5482 BT4125 conserved hypothetical protein (NCBI ptt file) sig. 36 90
  Desulfovibrio vulgaris Hildenborough JW710 DVU0790 radical SAM protein, TIGR01212 family (TIGR) insig. 39 82
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS04765 TIGR01212 family radical SAM protein insig. 39 82
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS14495 TIGR01212 family radical SAM protein sig. 36 85
o Methanococcus maripaludis S2 MMP_RS07685 TIGR01212 family radical SAM protein strong 33 87
o Phocaeicola dorei CL03T12C01 ABI39_RS10115 TIGR01212 family radical SAM protein insig. 36 85
o Methanococcus maripaludis JJ MMJJ_RS06675 TIGR01212 family radical SAM protein strong 32 87
  Fusobacterium nucleatum SB010 HUW76_02255 radical SAM protein cofit 24 65
  Methanococcus maripaludis JJ MMJJ_RS06255 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 strong 30 50
  Methanococcus maripaludis S2 MMP_RS08110 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 no data 29 50
  Desulfovibrio vulgaris Miyazaki F DvMF_1562 Radical SAM domain protein (RefSeq) no data 32 35
  Fusobacterium nucleatum SB010 HUW76_01555 coproporphyrinogen III oxidase cofit 35 26
  Fusobacterium nucleatum SB010 HUW76_07655 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB strong 29 34
  Desulfovibrio vulgaris Hildenborough JW710 DVU0394 radical SAM domain protein (TIGR) no data 28 61
  Azospirillum brasilense Sp245 AZOBR_RS01475 (dimethylallyl)adenosine tRNA methylthiotransferase insig. 39 21
  Rhodospirillum rubrum S1H Rru_A3770 tRNA-i(6)A37 modification enzyme MiaB (NCBI) strong 34 25
  Methanococcus maripaludis JJ MMJJ_RS07390 TIGR04014 family B12-binding domain/radical SAM domain-containing protein sig. 26 52
  Methanococcus maripaludis S2 MMP_RS06965 TIGR04014 family B12-binding domain/radical SAM domain-containing protein strong 26 52
  Shewanella oneidensis MR-1 SO1181 miaB tRNA-i(6)A37 modification enzyme MiaB (NCBI ptt file) strong 34 21
  Bifidobacterium breve UCC2003 BBR_RS15235 coproporphyrinogen III oxidase insig. 32 35
  Shewanella sp. ANA-3 Shewana3_1008 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) strong 34 21
  Shewanella loihica PV-4 Shew_2923 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) strong 26 50
  Fusobacterium nucleatum SB010 HUW76_04185 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB strong 23 48
  Shewanella amazonensis SB2B Sama_2575 tRNA-i(6)A37 modification enzyme MiaB (RefSeq) strong 32 21
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS04300 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB insig. 29 30
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS14720 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB insig. 26 46
  Marinobacter adhaerens HP15 HP15_1760 oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase insig. 32 22
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS13750 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB sig. 32 22
  Bacteroides stercoris CC31F HMPREF1181_RS06440 radical SAM family heme chaperone HemW cofit 27 33
  Mycobacterium tuberculosis H37Rv Rv2733c Conserved hypothetical alanine, arginine-rich protein sig. 35 25
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_05370 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB sig. 29 35
  Herbaspirillum seropedicae SmR1 HSERO_RS03615 (dimethylallyl)adenosine tRNA methylthiotransferase insig. 37 21
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF613 tRNA-i(6)A37 methylthiotransferase cofit 32 21
  Rhodopseudomonas palustris CGA009 TX73_002325 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB insig. 29 35
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS13125 B12-binding domain-containing radical SAM protein insig. 25 47
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS04680 radical SAM protein insig. 30 35
  Bacteroides ovatus ATCC 8483 BACOVA_03177 putative oxygen-independent coproporphyrinogen III oxidase insig. 24 42
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS11035 radical SAM family heme chaperone HemW cofit 21 68
  Mycobacterium tuberculosis H37Rv Rv2388c Probable oxygen-independent coproporphyrinogen III oxidase HemN (coproporphyrinogenase) (coprogen oxidase) sig. 27 38
  Rhodospirillum rubrum S1H Rru_A3046 Radical SAM (NCBI) insig. 36 23