Conservation of cofitness between TX73_008175 and TX73_005675 in Rhodopseudomonas palustris CGA009

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rhodopseudomonas palustris CGA009 1.0 TX73_008175 glutamate racemase 1.0 TX73_005675 NAD(P)/FAD-dependent oxidoreductase 0.70 1
Sinorhizobium meliloti 1021 0.48 SMc00483 glutamate racemase 0.16 SMc04452 NADH dehydrogenase transmembrane protein low > 103
Bosea sp. OAE506 0.46 ABIE41_RS13570 glutamate racemase 0.14 ABIE41_RS00975 NAD(P)/FAD-dependent oxidoreductase low > 77
Rhizobium sp. OAE497 0.46 ABIE40_RS10265 glutamate racemase 0.14 ABIE40_RS30795 NAD(P)/FAD-dependent oxidoreductase low > 107
Agrobacterium fabrum C58 0.45 Atu1867 glutamate racemase 0.16 Atu2023 NADH dehydrogenase low > 89
Serratia liquefaciens MT49 0.34 IAI46_24445 glutamate racemase 0.45 IAI46_09910 NAD(P)/FAD-dependent oxidoreductase — —
Vibrio cholerae E7946 ATCC 55056 0.34 CSW01_00800 glutamate racemase 0.43 CSW01_09465 NAD(P)/FAD-dependent oxidoreductase — —
Shewanella sp. ANA-3 0.33 Shewana3_0180 glutamate racemase (RefSeq) 0.33 Shewana3_3123 FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF2353 Glutamate racemase (EC 5.1.1.3) 0.46 GFF3392 NADH dehydrogenase (EC 1.6.99.3) — —
Erwinia tracheiphila SCR3 0.33 LU632_RS19545 murI glutamate racemase 0.44 LU632_RS14740 NAD(P)/FAD-dependent oxidoreductase — —
Klebsiella michiganensis M5al 0.32 BWI76_RS00895 glutamate racemase 0.44 BWI76_RS11175 NADH dehydrogenase — —
Sphingomonas koreensis DSMZ 15582 0.32 Ga0059261_2446 glutamate racemase (EC 5.1.1.3) 0.40 Ga0059261_1466 NADH dehydrogenase, FAD-containing subunit — —
Escherichia coli ECOR27 0.32 NOLOHH_05670 murI glutamate racemase 0.45 NOLOHH_21020 ndh NADH-quinone dehydrogenase — —
Escherichia coli ECRC62 0.32 BNILDI_05855 murI glutamate racemase 0.45 BNILDI_19185 ndh NADH-quinone dehydrogenase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.32 OHPLBJKB_04083 Glutamate racemase 0.45 OHPLBJKB_02557 NADH dehydrogenase — —
Escherichia fergusonii Becca 0.31 EFB2_04643 Glutamate racemase 0.45 EFB2_02866 NADH dehydrogenase — —
Shewanella loihica PV-4 0.31 Shew_0139 glutamate racemase (RefSeq) 0.41 Shew_2195 NADH dehydrogenase (RefSeq) — —
Escherichia coli ECRC100 0.31 OKFHMN_13525 murI glutamate racemase 0.44 OKFHMN_03495 ndh NADH-quinone dehydrogenase — —
Escherichia coli ECOR38 0.31 HEPCGN_12180 murI glutamate racemase 0.45 HEPCGN_23990 ndh NADH-quinone dehydrogenase — —
Escherichia coli ECRC99 0.31 KEDOAH_14635 murI glutamate racemase 0.44 KEDOAH_24260 ndh NADH-quinone dehydrogenase — —
Escherichia coli ECRC102 0.31 NIAGMN_11275 murI glutamate racemase 0.44 NIAGMN_24335 ndh NADH-quinone dehydrogenase — —
Escherichia coli Nissle 1917 0.31 ECOLIN_RS22910 glutamate racemase 0.45 ECOLIN_RS06400 NADH-quinone dehydrogenase — —
Escherichia coli ECRC98 0.31 JDDGAC_17150 murI glutamate racemase 0.44 JDDGAC_07155 ndh NADH-quinone dehydrogenase — —
Escherichia coli ECRC101 0.31 MCAODC_04025 murI glutamate racemase 0.44 MCAODC_22855 ndh NADH-quinone dehydrogenase — —
Escherichia coli BW25113 0.31 b3967 murI glutamate racemase, required for biosynthesis of D-glutamate and peptidoglycan (VIMSS) 0.45 b1109 ndh respiratory NADH dehydrogenase 2/cupric reductase (NCBI) — —
Escherichia coli BL21 0.31 ECD_03852 glutamate racemase 0.45 ECD_01105 respiratory NADH dehydrogenase 2/cupric reductase — —
Enterobacter sp. TBS_079 0.30 MPMX20_04513 Glutamate racemase 0.45 MPMX20_01790 NADH dehydrogenase — —
Enterobacter asburiae PDN3 0.30 EX28DRAFT_4430 glutamate racemase (EC 5.1.1.3) 0.45 EX28DRAFT_1821 NADH dehydrogenase, FAD-containing subunit — —
Shewanella amazonensis SB2B 0.29 Sama_0194 glutamate racemase (RefSeq) 0.32 Sama_0936 NADH dehydrogenase (RefSeq) — —
Marinobacter adhaerens HP15 0.28 HP15_803 glutamate racemase 0.46 HP15_3830 FAD-dependent pyridine nucleotide-disulfide oxidoreductase — —
Variovorax sp. OAS795 0.23 ABID97_RS17555 glutamate racemase 0.60 ABID97_RS26565 NAD(P)/FAD-dependent oxidoreductase — —
Pseudomonas sp. S08-1 0.22 OH686_07895 glutamate racemase 0.53 OH686_16450 NADH dehydrogenase — —
Variovorax sp. SCN45 0.22 GFF484 Glutamate racemase (EC 5.1.1.3) 0.15 GFF6814 NADH dehydrogenase (EC 1.6.99.3) — —
Pseudomonas syringae pv. syringae B728a 0.22 Psyr_0952 glutamate racemase 0.51 Psyr_0790 FAD-dependent pyridine nucleotide-disulfide oxidoreductase — —
Pseudomonas fluorescens GW456-L13 0.22 PfGW456L13_1585 Glutamate racemase (EC 5.1.1.3) 0.52 PfGW456L13_1496 NADH dehydrogenase (EC 1.6.99.3) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.22 Psyr_0952 glutamate racemase 0.51 Psyr_0790 FAD-dependent pyridine nucleotide-disulfide oxidoreductase — —
Pseudomonas putida KT2440 0.22 PP_0736 Glutamate racemase 0.54 PP_0626 NADH dehydrogenase — —
Pseudomonas fluorescens FW300-N1B4 0.22 Pf1N1B4_2922 Glutamate racemase (EC 5.1.1.3) 0.52 Pf1N1B4_2826 NADH dehydrogenase (EC 1.6.99.3) — —
Pseudomonas sp. RS175 0.22 PFR28_03652 Glutamate racemase 2 0.52 PFR28_03740 NADH dehydrogenase — —
Ralstonia solanacearum PSI07 0.21 RPSI07_RS14860 glutamate racemase 0.49 RPSI07_RS13485 NAD(P)/FAD-dependent oxidoreductase low > 81
Pseudomonas simiae WCS417 0.21 PS417_03620 glutamate racemase 0.51 PS417_03855 NADH dehydrogenase — —
Pseudomonas fluorescens FW300-N2E2 0.21 Pf6N2E2_5224 Glutamate racemase (EC 5.1.1.3) 0.52 Pf6N2E2_5132 NADH dehydrogenase (EC 1.6.99.3) — —
Ralstonia solanacearum GMI1000 0.21 RS_RS09835 glutamate racemase 0.49 RS_RS11190 NAD(P)/FAD-dependent oxidoreductase low > 80
Ralstonia sp. UNC404CL21Col 0.21 ABZR87_RS14380 glutamate racemase 0.49 ABZR87_RS15675 NAD(P)/FAD-dependent oxidoreductase low > 80
Pseudomonas fluorescens SBW25 0.21 PFLU_RS03670 glutamate racemase 0.51 PFLU_RS03905 NAD(P)/FAD-dependent oxidoreductase — —
Pseudomonas fluorescens FW300-N2E3 0.21 AO353_14800 glutamate racemase 0.52 AO353_14255 NADH dehydrogenase — —
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS03670 glutamate racemase 0.51 PFLU_RS03905 NAD(P)/FAD-dependent oxidoreductase — —
Pseudomonas fluorescens FW300-N2C3 0.21 AO356_16510 glutamate racemase 0.52 AO356_15965 NADH dehydrogenase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.21 GFF4098 Glutamate racemase (EC 5.1.1.3) 0.36 GFF4021 NADH dehydrogenase (EC 1.6.99.3) low > 90
Pseudomonas stutzeri RCH2 0.21 Psest_1116 glutamate racemase 0.52 Psest_0715 NADH dehydrogenase, FAD-containing subunit — —
Mycobacterium tuberculosis H37Rv 0.20 Rv1338 Probable glutamate racemase MurI 0.16 Rv0392c Probable membrane NADH dehydrogenase NdhA — —
Acidovorax sp. GW101-3H11 0.20 Ac3H11_940 Glutamate racemase (EC 5.1.1.3) 0.17 Ac3H11_2167 NADH dehydrogenase (EC 1.6.99.3) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.19 Echvi_4654 glutamate racemase 0.17 Echvi_3156 NADH dehydrogenase, FAD-containing subunit low > 79
Phocaeicola dorei CL03T12C01 0.18 ABI39_RS07035 glutamate racemase 0.16 ABI39_RS15145 NAD(P)/FAD-dependent oxidoreductase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.18 CA264_01685 glutamate racemase 0.16 CA264_14170 FAD-dependent oxidoreductase — —
Bacteroides thetaiotaomicron VPI-5482 0.18 BT3722 glutamate racemase (NCBI ptt file) 0.13 BT1537 putative NADH dehydrogenase (NCBI ptt file) — —
Pedobacter sp. GW460-11-11-14-LB5 0.18 CA265_RS15060 glutamate racemase 0.12 CA265_RS13110 FAD-dependent oxidoreductase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.17 ABZR88_RS15760 glutamate racemase 0.17 ABZR88_RS14020 NAD(P)/FAD-dependent oxidoreductase low > 71
Azospirillum brasilense Sp245 0.16 AZOBR_RS08075 glutamate racemase 0.17 AZOBR_RS00545 FAD-dependent pyridine nucleotide-disulfide oxidoreductase low > 97

Not shown: 8 genomes with orthologs for TX73_008175 only; 26 genomes with orthologs for TX73_005675 only