Conservation of cofitness between TX73_019540 and TX73_004635 in Rhodopseudomonas palustris CGA009

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rhodopseudomonas palustris CGA009 1.0 TX73_019540 FAD-dependent oxidoreductase 1.0 TX73_004635 LysE family translocator 0.51 15
Rhizobium sp. OAE497 0.54 ABIE40_RS03380 FAD-binding oxidoreductase 0.36 ABIE40_RS06290 LysE family translocator low > 107
Sinorhizobium meliloti 1021 0.53 SMc00797 oxidoreductase 0.27 SM_b21507 amino acid transporter, exporter protein low > 103
Ralstonia solanacearum PSI07 0.53 RPSI07_RS07505 FAD-binding oxidoreductase 0.43 RPSI07_RS23585 LysE family translocator low > 81
Paraburkholderia bryophila 376MFSha3.1 0.53 H281DRAFT_03160 D-amino-acid dehydrogenase 0.43 H281DRAFT_02239 resistance to homoserine/threonine (RhtB) family protein — —
Ralstonia solanacearum UW163 0.52 UW163_RS16930 FAD-binding oxidoreductase 0.44 UW163_RS03800 LysE family translocator — —
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS16195 FAD-binding oxidoreductase 0.44 RALBFv3_RS09780 LysE family translocator low > 76
Paraburkholderia graminis OAS925 0.52 ABIE53_004136 D-amino-acid dehydrogenase 0.43 ABIE53_000390 RhtB (resistance to homoserine/threonine) family protein low > 113
Pseudomonas putida KT2440 0.52 PP_3596 D-lysine oxidase 0.28 PP_2171 Transporter, LysE family low > 96
Burkholderia phytofirmans PsJN 0.51 BPHYT_RS10270 D-amino acid dehydrogenase 0.39 BPHYT_RS01465 lysine transporter LysE low > 109
Bosea sp. OAE506 0.51 ABIE41_RS13575 FAD-binding oxidoreductase 0.27 ABIE41_RS14940 LysE family translocator low > 77
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS12475 FAD-binding oxidoreductase 0.43 QEN71_RS00165 LysE family translocator low > 153
Ralstonia sp. UNC404CL21Col 0.51 ABZR87_RS23145 FAD-binding oxidoreductase 0.45 ABZR87_RS04960 LysE family translocator low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF267 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.47 GFF3109 Lysine exporter protein (LYSE/YGGA) low > 90
Shewanella loihica PV-4 0.24 Shew_2360 D-hydroxyproline dehydrogenase (from data) 0.21 Shew_3860 lysine exporter protein LysE/YggA (RefSeq) low > 60
Ralstonia solanacearum GMI1000 0.23 RS_RS02525 FAD-dependent oxidoreductase 0.43 RS_RS00365 LysE family translocator low > 80
Pseudomonas fluorescens GW456-L13 0.21 PfGW456L13_3586 D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster 0.24 PfGW456L13_4780 L-lysine permease low > 87
Agrobacterium fabrum C58 0.20 Atu3364 D-amino acid dehydrogenase 0.33 Atu5358 RhtB family transporter — —
Pseudomonas simiae WCS417 0.19 PS417_14320 FAD-dependent oxidoreductase 0.29 PS417_14655 lysine transporter LysE low > 88
Rhodospirillum rubrum S1H 0.19 Rru_A2064 FAD dependent oxidoreductase (NCBI) 0.28 Rru_A3172 Lysine exporter protein (LYSE/YGGA) (NCBI) low > 58
Herbaspirillum seropedicae SmR1 0.19 HSERO_RS22955 D-amino acid dehydrogenase 0.31 HSERO_RS15750 lysine transporter LysE low > 78
Azospirillum sp. SherDot2 0.18 MPMX19_04536 D-amino acid dehydrogenase 1 0.29 MPMX19_00458 Leucine efflux protein low > 112
Cupriavidus basilensis FW507-4G11 0.18 RR42_RS09075 amino acid dehydrogenase 0.38 RR42_RS20460 lysine transporter LysE low > 128
Vibrio cholerae E7946 ATCC 55056 0.17 CSW01_04065 D-amino acid dehydrogenase small subunit 0.32 CSW01_15835 LysE family translocator low > 62
Variovorax sp. OAS795 0.16 ABID97_RS22385 D-amino acid dehydrogenase 0.43 ABID97_RS05270 LysE family translocator low > 91
Rhodanobacter sp. FW510-T8 0.16 OKGIIK_06665 dadA D-amino acid dehydrogenase small subunit 0.41 OKGIIK_13285 LysE type translocator low > 52
Pseudomonas sp. S08-1 0.16 OH686_13685 D-amino acid dehydrogenase 0.50 OH686_05525 Threonine efflux protein low > 80
Pseudomonas fluorescens FW300-N2C3 0.16 AO356_12620 amino acid dehydrogenase 0.28 AO356_29475 lysine transporter LysE low > 104
Pseudomonas fluorescens FW300-N2E3 0.16 AO353_09155 amino acid dehydrogenase 0.28 AO353_23075 lysine transporter LysE low > 101
Pseudomonas stutzeri RCH2 0.16 Psest_3793 D-alanine dehydrogenase (EC 1.4.99.-) (from data) 0.37 Psest_1447 Putative threonine efflux protein low > 67
Variovorax sp. SCN45 0.16 GFF1773 D-amino acid dehydrogenase (EC 1.4.99.6) 0.41 GFF5892 Lysine exporter protein LysE/YggA low > 127
Pectobacterium carotovorum WPP14 0.15 HER17_RS11170 D-amino acid dehydrogenase 0.32 HER17_RS21215 LysE family translocator low > 75
Pseudomonas syringae pv. syringae B728a 0.15 Psyr_0235 D-amino acid dehydrogenase small subunit 0.23 Psyr_0989 Lysine exporter protein (LYSE/YGGA) low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.15 Psyr_0235 D-amino acid dehydrogenase small subunit 0.23 Psyr_0989 Lysine exporter protein (LYSE/YGGA) low > 86
Dechlorosoma suillum PS 0.14 Dsui_0501 glycine/D-amino acid oxidase, deaminating 0.25 Dsui_3272 putative threonine efflux protein — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.14 GFF2804 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.23 GFF3454 Putative transport protein low > 78
Rahnella sp. WP5 0.14 EX31_RS10485 D-amino acid dehydrogenase 0.30 EX31_RS05665 LysE family translocator low > 89
Azospirillum brasilense Sp245 0.14 AZOBR_RS08020 D-alanine dehydrogenase (EC 1.4.99.-) (from data) 0.31 AZOBR_RS11980 transporter low > 97
Dickeya dadantii 3937 0.14 DDA3937_RS11170 D-amino acid dehydrogenase 0.53 DDA3937_RS03260 LysE family translocator low > 74
Klebsiella michiganensis M5al 0.14 BWI76_RS17735 D-amino acid dehydrogenase small subunit 0.29 BWI76_RS15055 lysine transporter LysE low > 92
Acidovorax sp. GW101-3H11 0.13 Ac3H11_1644 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.43 Ac3H11_770 Lysine exporter protein (LYSE/YGGA) low > 79
Magnetospirillum magneticum AMB-1 0.13 AMB_RS14080 D-amino-acid dehydrogenase 0.33 AMB_RS11450 LysE family translocator — —
Enterobacter sp. TBS_079 0.13 MPMX20_02699 D-amino acid dehydrogenase 0.25 MPMX20_00942 Homoserine/homoserine lactone efflux protein low > 85
Acinetobacter radioresistens SK82 0.12 MPMX26_01248 D-amino acid dehydrogenase 0.26 MPMX26_01918 Homoserine/homoserine lactone efflux protein low > 36
Marinobacter adhaerens HP15 0.12 HP15_2610 D-amino acid dehydrogenase small subunit 0.26 HP15_1044 lysine exporter protein (LYSE/YGGA) low > 73
Serratia liquefaciens MT49 0.12 IAI46_14460 D-amino acid dehydrogenase 0.27 IAI46_07470 LysE family translocator low > 86
Dyella japonica UNC79MFTsu3.2 0.11 ABZR86_RS08930 FAD-dependent oxidoreductase 0.42 ABZR86_RS13475 LysE family translocator — —

Not shown: 34 genomes with orthologs for TX73_019540 only; 9 genomes with orthologs for TX73_004635 only