Conservation of cofitness between SMc03228 and SMc02077 in Sinorhizobium meliloti 1021

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sinorhizobium meliloti 1021 1.0 SMc03228 YciI-like protein 1.0 SMc02077 exodeoxyribonuclease III protein 0.37 4
Rhizobium sp. OAE497 0.78 ABIE40_RS18050 YciI-like protein 0.80 ABIE40_RS08420 exodeoxyribonuclease III low > 107
Agrobacterium fabrum C58 0.63 Atu2649 hypothetical protein 0.73 Atu1714 exonuclease III low > 89
Dinoroseobacter shibae DFL-12 0.46 Dshi_3413 YCII-related (RefSeq) 0.55 Dshi_1886 exodeoxyribonuclease III Xth (RefSeq) low > 64
Caulobacter crescentus NA1000 0.39 CCNA_00067 YciI-like protein 0.55 CCNA_02090 exodeoxyribonuclease III low > 66
Caulobacter crescentus NA1000 Δfur 0.39 CCNA_00067 YciI-like protein 0.55 CCNA_02090 exodeoxyribonuclease III — —
Azospirillum brasilense Sp245 0.39 AZOBR_RS00285 hypothetical protein 0.51 AZOBR_RS15540 exodeoxyribonuclease III 0.85 2
Phaeobacter inhibens DSM 17395 0.38 PGA1_c35470 protein YciI 0.55 PGA1_c11070 exodeoxyribonuclease III low > 62
Alteromonas macleodii MIT1002 0.36 MIT1002_01424 YciI-like protein 0.27 MIT1002_01652 Exodeoxyribonuclease III low > 70
Pseudomonas simiae WCS417 0.36 PS417_22285 hypothetical protein 0.28 PS417_16980 exonuclease III low > 88
Dickeya dianthicola ME23 0.36 DZA65_RS10900 YciI family protein 0.31 DZA65_RS10795 exodeoxyribonuclease III low > 75
Pseudomonas fluorescens SBW25 0.36 PFLU_RS23925 YciI family protein 0.27 PFLU_RS18930 exodeoxyribonuclease III low > 109
Pseudomonas fluorescens FW300-N2E3 0.36 AO353_18510 hypothetical protein 0.28 AO353_27875 exonuclease III low > 101
Pseudomonas fluorescens SBW25-INTG 0.36 PFLU_RS23925 YciI family protein 0.27 PFLU_RS18930 exodeoxyribonuclease III low > 109
Rahnella sp. WP5 0.35 EX31_RS10020 YciI family protein 0.30 EX31_RS06330 exodeoxyribonuclease III low > 89
Dickeya dadantii 3937 0.35 DDA3937_RS10420 YciI family protein 0.32 DDA3937_RS10310 exodeoxyribonuclease III 0.37 72
Escherichia coli Nissle 1917 0.35 ECOLIN_RS07555 YciI family protein 0.28 ECOLIN_RS09750 exodeoxyribonuclease III — —
Escherichia fergusonii Becca 0.35 EFB2_02674 Protein YciI 0.29 EFB2_02244 Exodeoxyribonuclease III low > 86
Pseudomonas syringae pv. syringae B728a 0.35 Psyr_3588 YCII-related protein 0.30 Psyr_2476 Exodeoxyribonuclease III — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.35 Psyr_3588 YCII-related protein 0.30 Psyr_2476 Exodeoxyribonuclease III — —
Escherichia coli BW25113 0.35 b1251 yciI orf, hypothetical protein (VIMSS) 0.29 b1749 xthA exonuclease III (NCBI) low > 76
Escherichia coli BL21 0.35 ECD_01225 putative DGPF domain-containing enzyme 0.29 ECD_01718 exonuclease III — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.35 OHPLBJKB_02432 Protein YciI 0.29 OHPLBJKB_01983 Exodeoxyribonuclease III — —
Dechlorosoma suillum PS 0.34 Dsui_2887 hypothetical protein 0.37 Dsui_0044 exodeoxyribonuclease III low > 51
Shewanella loihica PV-4 0.34 Shew_2261 YciI-like protein (RefSeq) 0.29 Shew_2262 exonuclease III (RefSeq) — —
Dickeya dianthicola 67-19 0.34 HGI48_RS10425 YciI family protein 0.31 HGI48_RS10320 exodeoxyribonuclease III low > 71
Kangiella aquimarina DSM 16071 0.34 B158DRAFT_2302 Uncharacterized protein conserved in bacteria 0.27 B158DRAFT_1291 exodeoxyribonuclease III low > 40
Escherichia coli ECRC98 0.34 JDDGAC_05905 yciI YciI family protein 0.29 JDDGAC_01475 xthA exodeoxyribonuclease III — —
Escherichia coli ECRC101 0.34 OKFHMN_28670 yciI YciI family protein 0.29 OKFHMN_26900 xthA exodeoxyribonuclease III — —
Escherichia coli ECRC99 0.34 KEDOAH_25665 yciI YciI family protein 0.29 KEDOAH_01210 xthA exodeoxyribonuclease III — —
Escherichia coli ECRC101 0.34 MCAODC_21590 yciI YciI family protein 0.29 MCAODC_18510 xthA exodeoxyribonuclease III — —
Escherichia coli ECOR27 0.34 NOLOHH_20380 yciI YciI family protein 0.29 NOLOHH_17415 xthA exodeoxyribonuclease III — —
Escherichia coli ECOR38 0.34 HEPCGN_25135 yciI YciI family protein 0.28 HEPCGN_05265 xthA exodeoxyribonuclease III low > 85
Escherichia coli ECRC102 0.34 NIAGMN_27565 yciI YciI family protein 0.29 NIAGMN_01165 xthA exodeoxyribonuclease III — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.34 GFF2737 YciL protein 0.28 GFF3490 Exodeoxyribonuclease III (EC 3.1.11.2) low > 78
Marinobacter adhaerens HP15 0.33 HP15_2225 YciI-like protein 0.27 HP15_1776 exonuclease III low > 73
Acinetobacter radioresistens SK82 0.33 MPMX26_02640 Protein YciI 0.19 MPMX26_02938 Exodeoxyribonuclease low > 36
Pectobacterium carotovorum WPP14 0.33 HER17_RS10975 YciI family protein 0.32 HER17_RS11085 exodeoxyribonuclease III low > 75
Vibrio cholerae E7946 ATCC 55056 0.33 CSW01_08565 hypothetical protein 0.30 CSW01_09315 exodeoxyribonuclease III low > 62
Rhodanobacter denitrificans MT42 0.32 LRK55_RS18180 YciI family protein 0.33 LRK55_RS08390 exodeoxyribonuclease III low > 63
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS00280 YciI family protein 0.33 LRK54_RS08625 exodeoxyribonuclease III low > 59
Rhodospirillum rubrum S1H 0.32 Rru_A3572 YCII-related (NCBI) 0.49 Rru_A1784 exodeoxyribonuclease III xth (NCBI) — —
Serratia liquefaciens MT49 0.32 IAI46_14115 YciI family protein 0.31 IAI46_14290 exodeoxyribonuclease III — —
Erwinia tracheiphila SCR3 0.32 LU632_RS12835 YciI family protein 0.29 LU632_RS12950 xthA exodeoxyribonuclease III low > 74
Enterobacter sp. TBS_079 0.32 MPMX20_02577 Protein YciI 0.30 MPMX20_01864 Exodeoxyribonuclease III low > 85
Klebsiella michiganensis M5al 0.31 BWI76_RS17195 hypothetical protein 0.30 BWI76_RS11665 exodeoxyribonuclease III low > 92
Shewanella amazonensis SB2B 0.31 Sama_2138 YciI-like protein (RefSeq) 0.28 Sama_2139 exodeoxyribonuclease III (RefSeq) low > 62
Rhodanobacter sp. FW510-T8 0.31 OKGIIK_07030 YciI family protein 0.34 OKGIIK_15390 xth exodeoxyribonuclease III low > 52
Pantoea sp. MT58 0.30 IAI47_09125 YciI family protein 0.28 IAI47_08990 exodeoxyribonuclease III low > 76
Enterobacter asburiae PDN3 0.30 EX28DRAFT_0921 Uncharacterized protein conserved in bacteria 0.29 EX28DRAFT_1753 exodeoxyribonuclease III low > 76
Shewanella oneidensis MR-1 0.30 SO3036 conserved hypothetical protein (NCBI ptt file) 0.30 SO3037 xth exodeoxyribonuclease III (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.30 Shewana3_1504 YciI-like protein (RefSeq) 0.30 Shewana3_1503 exonuclease III (RefSeq) low > 73
Dyella japonica UNC79MFTsu3.2 0.29 ABZR86_RS02840 YciI family protein 0.34 ABZR86_RS14930 exodeoxyribonuclease III low > 74
Azospirillum sp. SherDot2 0.29 MPMX19_02041 Protein YciI 0.50 MPMX19_04331 Exodeoxyribonuclease low > 112
Hydrogenophaga sp. GW460-11-11-14-LB1 0.28 GFF1577 YciL protein 0.35 GFF5268 Exodeoxyribonuclease III (EC 3.1.11.2) low > 90
Cupriavidus basilensis FW507-4G11 0.27 RR42_RS32875 hypothetical protein 0.36 RR42_RS07325 exodeoxyribonuclease III 0.32 66

Not shown: 13 genomes with orthologs for SMc03228 only; 25 genomes with orthologs for SMc02077 only