Conservation of cofitness between RS_RS00595 and RS_RS01920 in Ralstonia solanacearum GMI1000

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Ralstonia solanacearum GMI1000 1.0 RS_RS00595 acyl-CoA dehydrogenase 1.0 RS_RS01920 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.37 4
Ralstonia sp. UNC404CL21Col 0.91 ABZR87_RS04770 acyl-CoA dehydrogenase family protein 0.77 ABZR87_RS06960 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 80
Ralstonia solanacearum IBSBF1503 0.90 RALBFv3_RS09980 acyl-CoA dehydrogenase 0.92 RALBFv3_RS11070 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 76
Ralstonia solanacearum UW163 0.90 UW163_RS03600 acyl-CoA dehydrogenase 0.92 UW163_RS02510 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD — —
Ralstonia solanacearum PSI07 0.89 RPSI07_RS23380 acyl-CoA dehydrogenase 0.94 RPSI07_RS22230 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 81
Cupriavidus basilensis FW507-4G11 0.77 RR42_RS01285 acyl-CoA dehydrogenase 0.46 RR42_RS01990 methyltransferase low > 128
Burkholderia phytofirmans PsJN 0.60 BPHYT_RS18740 acyl-CoA dehydrogenase 0.44 BPHYT_RS02815 methyltransferase low > 109
Herbaspirillum seropedicae SmR1 0.58 HSERO_RS04905 acyl-CoA dehydrogenase 0.40 HSERO_RS20695 methyltransferase low > 78
Paraburkholderia bryophila 376MFSha3.1 0.58 H281DRAFT_05793 putative acyl-CoA dehydrogenase 0.44 H281DRAFT_01968 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 103
Paraburkholderia sabiae LMG 24235 0.57 QEN71_RS28760 isovaleryl-CoA dehydrogenase 0.43 QEN71_RS01665 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 153
Paraburkholderia graminis OAS925 0.56 ABIE53_000068 putative acyl-CoA dehydrogenase 0.41 ABIE53_000701 16S rRNA (guanine966-N2)-methyltransferase low > 113
Variovorax sp. SCN45 0.50 GFF5375 Acyl-CoA dehydrogenase 0.33 GFF2320 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) low > 127
Acinetobacter radioresistens SK82 0.48 MPMX26_00339 Putative acyl-CoA dehydrogenase AidB 0.28 MPMX26_02312 Ribosomal RNA small subunit methyltransferase D — —
Castellaniella sp019104865 MT123 0.47 ABCV34_RS01615 acyl-CoA dehydrogenase family protein 0.35 ABCV34_RS10145 RsmD family RNA methyltransferase low > 48
Marinobacter adhaerens HP15 0.42 HP15_3339 acyl-CoA dehydrogenase domain protein 0.29 HP15_3491 conserved hypothetical protein low > 73
Pseudomonas sp. S08-1 0.41 OH686_08875 Acyl-CoA dehydrogenase 0.24 OH686_14220 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 80
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_06340 acyl-CoA dehydrogenase 0.27 AO353_08265 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 101
Pseudomonas stutzeri RCH2 0.41 Psest_0539 Acyl-CoA dehydrogenases 0.28 Psest_0255 RNA methyltransferase, RsmD family — —
Variovorax sp. OAS795 0.41 ABID97_RS15780 isovaleryl-CoA dehydrogenase 0.36 ABID97_RS23860 RsmD family RNA methyltransferase low > 91
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_1387 Acyl-CoA dehydrogenase (EC 1.3.8.7) 0.25 PfGW456L13_990 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) low > 87
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_2720 Acyl-CoA dehydrogenase (EC 1.3.8.7) 0.26 Pf1N1B4_2320 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) — —
Pseudomonas syringae pv. syringae B728a 0.40 Psyr_4338 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region 0.26 Psyr_4754 16S rRNA m(2)G-966 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.40 Psyr_4338 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region 0.26 Psyr_4754 16S rRNA m(2)G-966 methyltransferase low > 86
Pseudomonas simiae WCS417 0.40 PS417_24590 acyl-CoA dehydrogenase 0.25 PS417_26825 16S rRNA methyltransferase — —
Pseudomonas fluorescens FW300-N2C3 0.40 AO356_15445 acyl-CoA dehydrogenase 0.27 AO356_13320 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 104
Pseudomonas fluorescens FW300-N2E2 0.40 Pf6N2E2_5026 Acyl-CoA dehydrogenase (EC 1.3.8.7) 0.27 Pf6N2E2_4579 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) low > 103
Pseudomonas putida KT2440 0.40 PP_4780 putative Acyl-CoA dehydrogenase 0.25 PP_5114 putative adenine methyltransferase low > 96
Pseudomonas fluorescens SBW25 0.40 PFLU_RS26520 acyl-CoA dehydrogenase 0.25 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 109
Pseudomonas fluorescens SBW25-INTG 0.40 PFLU_RS26520 acyl-CoA dehydrogenase 0.25 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 109
Pseudomonas sp. RS175 0.39 PFR28_03841 Putative acyl-CoA dehydrogenase AidB 0.27 PFR28_04262 Ribosomal RNA small subunit methyltransferase D low > 88
Serratia liquefaciens MT49 0.39 IAI46_01670 isovaleryl-CoA dehydrogenase 0.27 IAI46_00920 16S rRNA (guanine(966)-N(2))-methyltransferase low > 86
Rahnella sp. WP5 0.38 EX31_RS08775 isovaleryl-CoA dehydrogenase 0.28 EX31_RS14835 16S rRNA (guanine(966)-N(2))-methyltransferase low > 89
Enterobacter asburiae PDN3 0.38 EX28DRAFT_3379 Acyl-CoA dehydrogenases 0.27 EX28DRAFT_4299 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 76
Lysobacter sp. OAE881 0.38 ABIE51_RS13790 acyl-CoA dehydrogenase family protein 0.29 ABIE51_RS15125 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 62
Enterobacter sp. TBS_079 0.38 MPMX20_00463 Putative acyl-CoA dehydrogenase AidB 0.27 MPMX20_04342 Ribosomal RNA small subunit methyltransferase D low > 85
Escherichia coli ECOR38 0.37 HEPCGN_10410 aidB isovaleryl-CoA dehydrogenase 0.28 HEPCGN_15525 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.37 GFF841 Acyl-CoA dehydrogenase (EC 1.3.8.7) 0.26 GFF540 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) low > 78
Escherichia coli BL21 0.37 ECD_04054 DNA alkylation damage repair protein; flavin-containing DNA binding protein, weak isovaleryl CoA dehydrogenase 0.28 ECD_03314 16S rRNA m(2)G966 methyltransferase, SAM-dependent low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_03855 Putative acyl-CoA dehydrogenase AidB 0.29 OHPLBJKB_00238 Ribosomal RNA small subunit methyltransferase D low > 73
Escherichia coli ECRC62 0.37 BNILDI_07045 aidB isovaleryl-CoA dehydrogenase 0.28 BNILDI_03015 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 75
Escherichia coli ECRC100 0.37 OKFHMN_12180 aidB isovaleryl-CoA dehydrogenase 0.28 OKFHMN_16695 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 80
Klebsiella michiganensis M5al 0.37 BWI76_RS02590 isovaleryl-CoA dehydrogenase 0.27 BWI76_RS26405 16S rRNA (guanine(966)-N(2))-methyltransferase low > 92
Escherichia coli ECRC98 0.37 JDDGAC_15820 aidB isovaleryl-CoA dehydrogenase 0.28 JDDGAC_20325 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.73 48
Escherichia coli ECRC101 0.37 MCAODC_02695 aidB isovaleryl-CoA dehydrogenase 0.28 MCAODC_07225 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 87
Escherichia coli ECRC99 0.37 KEDOAH_15975 aidB isovaleryl-CoA dehydrogenase 0.28 KEDOAH_11445 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase — —
Escherichia coli ECOR27 0.37 NOLOHH_04440 aidB isovaleryl-CoA dehydrogenase 0.28 NOLOHH_08500 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 75
Escherichia coli ECRC102 0.37 NIAGMN_10030 aidB isovaleryl-CoA dehydrogenase 0.28 NIAGMN_14465 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase — —
Escherichia fergusonii Becca 0.37 EFB2_04348 Putative acyl-CoA dehydrogenase AidB 0.28 EFB2_00351 Ribosomal RNA small subunit methyltransferase D low > 86
Escherichia coli Nissle 1917 0.37 ECOLIN_RS24305 isovaleryl-CoA dehydrogenase 0.28 ECOLIN_RS19815 16S rRNA (guanine(966)-N(2))-methyltransferase low > 55
Escherichia coli BW25113 0.36 b4187 aidB putative acyl coenzyme A dehydrogenase (VIMSS) 0.28 b3465 yhhF predicted methyltransferase (NCBI) low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.36 GFF4603 Acyl-CoA dehydrogenase (EC 1.3.8.7) 0.38 GFF817 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) low > 90
Pantoea sp. MT58 0.35 IAI47_02635 isovaleryl-CoA dehydrogenase 0.29 IAI47_01535 16S rRNA (guanine(966)-N(2))-methyltransferase low > 76
Rhodanobacter denitrificans FW104-10B01 0.13 LRK54_RS03800 acyl-CoA dehydrogenase family protein 0.28 LRK54_RS13340 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 59
Rhodanobacter denitrificans MT42 0.12 LRK55_RS03550 acyl-CoA dehydrogenase family protein 0.28 LRK55_RS13080 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 63

Not shown: 9 genomes with orthologs for RS_RS00595 only; 15 genomes with orthologs for RS_RS01920 only