| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Cupriavidus basilensis FW507-4G11 | 1.0 | RR42_RS01085 | | chemotaxis protein CheY | 1.0 | RR42_RS31275 | | Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (from data) | 0.35 | 8 |
| Ralstonia solanacearum GMI1000 | 0.66 | RS_RS00200 | | DNA-binding response regulator | 0.79 | RS_RS20435 | | homogentisate 1,2-dioxygenase | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.65 | ABZR87_RS05135 | | response regulator transcription factor | 0.80 | ABZR87_RS20850 | | homogentisate 1,2-dioxygenase | — | — |
| Ralstonia solanacearum UW163 | 0.65 | UW163_RS03965 | | DNA-binding response regulator | 0.79 | UW163_RS18935 | | homogentisate 1,2-dioxygenase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.65 | RALBFv3_RS09615 | | DNA-binding response regulator | 0.79 | RALBFv3_RS20240 | | homogentisate 1,2-dioxygenase | low | > 76 |
| Ralstonia solanacearum PSI07 | 0.65 | RPSI07_RS23750 | | DNA-binding response regulator | 0.79 | RPSI07_RS02620 | | homogentisate 1,2-dioxygenase | low | > 81 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.59 | H281DRAFT_02208 | | two component transcriptional regulator, Fis family | 0.76 | H281DRAFT_04741 | | homogentisate 1,2-dioxygenase | — | — |
| Burkholderia phytofirmans PsJN | 0.59 | BPHYT_RS01625 | | chemotaxis protein CheY | 0.76 | BPHYT_RS03800 | | homogentisate 1,2-dioxygenase | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.59 | ABIE53_000420 | | two-component system response regulator RegA | 0.77 | ABIE53_000903 | | homogentisate 1,2-dioxygenase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.59 | QEN71_RS00325 | | response regulator transcription factor | 0.75 | QEN71_RS26160 | | homogentisate 1,2-dioxygenase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.56 | HSERO_RS13000 | | chemotaxis protein CheY | 0.71 | HSERO_RS05605 | | homogentisate 1,2-dioxygenase | low | > 78 |
| Dyella japonica UNC79MFTsu3.2 | 0.44 | ABZR86_RS10115 | | response regulator transcription factor | 0.69 | ABZR86_RS18480 | | homogentisate 1,2-dioxygenase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.44 | Psyr_4230 | | Helix-turn-helix, Fis-type | 0.57 | Psyr_3326 | | homogentisate 1,2-dioxygenase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.44 | Psyr_4230 | | Helix-turn-helix, Fis-type | 0.57 | Psyr_3326 | | homogentisate 1,2-dioxygenase | low | > 86 |
| Rhodanobacter denitrificans FW104-10B01 | 0.43 | LRK54_RS04040 | | response regulator transcription factor | 0.70 | LRK54_RS05845 | | homogentisate 1,2-dioxygenase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.43 | PfGW456L13_5048 | | Dna binding response regulator PrrA (RegA) | 0.58 | PfGW456L13_4962 | | Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (from data) | low | > 87 |
| Rhodanobacter denitrificans MT42 | 0.43 | LRK55_RS03810 | | response regulator transcription factor | 0.71 | LRK55_RS05600 | | homogentisate 1,2-dioxygenase | low | > 63 |
| Pseudomonas putida KT2440 | 0.43 | PP_0888 | | Photosynthetic apparatus regulatory protein RegA | 0.60 | PP_4621 | | Homogentisate 1,2-dioxygenase | low | > 96 |
| Rhodanobacter sp. FW510-T8 | 0.42 | OKGIIK_10900 | | two-component system response regulator | 0.70 | OKGIIK_00790 | hmgA | homogentisate 1,2-dioxygenase | — | — |
| Pseudomonas sp. RS175 | 0.42 | PFR28_00137 | | Photosynthetic apparatus regulatory protein RegA | 0.58 | PFR28_00221 | | Homogentisate 1,2-dioxygenase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.42 | Pf6N2E2_3302 | | Dna binding response regulator PrrA (RegA) | 0.59 | Pf6N2E2_5290 | | Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (from data) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.42 | AO356_07205 | | chemotaxis protein CheY | 0.59 | AO356_16825 | | homogentisate 1,2-dioxygenase | — | — |
| Pseudomonas fluorescens SBW25 | 0.41 | PFLU_RS04140 | | response regulator transcription factor | 0.60 | PFLU_RS05085 | | homogentisate 1,2-dioxygenase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.41 | PFLU_RS04140 | | response regulator transcription factor | 0.60 | PFLU_RS05085 | | homogentisate 1,2-dioxygenase | low | > 109 |
| Pseudomonas simiae WCS417 | 0.41 | PS417_04100 | | chemotaxis protein CheY | 0.60 | PS417_05015 | | homogentisate 1,2-dioxygenase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.41 | Pf1N1B4_1115 | | Dna binding response regulator PrrA (RegA) | 0.59 | Pf1N1B4_1025 | | Homogentisate 1,2-dioxygenase (EC 1.13.11.5) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.41 | AO353_05335 | | chemotaxis protein CheY | 0.59 | AO353_15550 | | Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (from data) | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.36 | Xcc-8004.3041.1 | | Dna binding response regulator PrrA (RegA) | 0.68 | Xcc-8004.580.1 | | Homogentisate 1,2-dioxygenase (EC 1.13.11.5) | low | > 74 |
| Sinorhizobium meliloti 1021 | 0.35 | SMc02584 | | transcriptional regulator | 0.50 | SMc03208 | | homogentisate 1,2-dioxygenase | — | — |
| Dinoroseobacter shibae DFL-12 | 0.34 | Dshi_3430 | | two component transcriptional regulator, Fis family (RefSeq) | 0.49 | Dshi_3812 | | homogentisate 1,2-dioxygenase (RefSeq) | — | — |
| Rhodopseudomonas palustris CGA009 | 0.33 | TX73_002960 | | ActR/PrrA/RegA family redox response regulator transcription factor | 0.55 | TX73_024285 | | homogentisate 1,2-dioxygenase | low | > 86 |
| Phaeobacter inhibens DSM 17395 | 0.33 | PGA1_c35390 | | photosynthetic apparatus regulatory protein RegA | 0.49 | PGA1_c00440 | | homogentisate 1,2-dioxygenase HmgA | — | — |
| Azospirillum sp. SherDot2 | 0.31 | MPMX19_06181 | | Photosynthetic apparatus regulatory protein RegA | 0.76 | MPMX19_05415 | | Homogentisate 1,2-dioxygenase | — | — |
| Variovorax sp. OAS795 | 0.31 | ABID97_RS07610 | | response regulator transcription factor | 0.58 | ABID97_RS29490 | | homogentisate 1,2-dioxygenase | low | > 91 |
| Caulobacter crescentus NA1000 | 0.31 | CCNA_01845 | | two-component response regulator protein | 0.58 | CCNA_02615 | | homogentisate 1,2-dioxygenase | low | > 66 |
| Variovorax sp. SCN45 | 0.31 | GFF5672 | | Dna binding response regulator PrrA (RegA) | 0.54 | GFF5054 | | Homogentisate 1,2-dioxygenase (EC 1.13.11.5) | low | > 127 |
| Caulobacter crescentus NA1000 Δfur | 0.31 | CCNA_01845 | | two-component response regulator protein | 0.58 | CCNA_02615 | | homogentisate 1,2-dioxygenase | low | > 67 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.30 | A4249_RS04475 | | response regulator transcription factor | 0.58 | A4249_RS10755 | | homogentisate 1,2-dioxygenase | low | > 48 |
| Sphingomonas koreensis DSMZ 15582 | 0.29 | Ga0059261_1560 | | Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain | 0.50 | Ga0059261_1694 | | homogentisate 1,2-dioxygenase (EC 1.13.11.5) | 0.37 | 47 |
| Lysobacter sp. OAE881 | 0.28 | ABIE51_RS09795 | | response regulator transcription factor | 0.69 | ABIE51_RS04085 | | homogentisate 1,2-dioxygenase | — | — |
Not shown: 14 genomes with orthologs for RR42_RS01085 only; 3 genomes with orthologs for RR42_RS31275 only