Conservation of cofitness between RR42_RS04710 and RR42_RS19045 in Cupriavidus basilensis FW507-4G11

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS04710 50S rRNA methyltransferase 1.0 RR42_RS19045 frataxin 0.30 16
Ralstonia sp. UNC404CL21Col 0.85 ABZR87_RS15430 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.76 ABZR87_RS02630 iron donor protein CyaY low > 80
Ralstonia solanacearum IBSBF1503 0.84 RALBFv3_RS03565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.73 RALBFv3_RS06980 iron donor protein CyaY low > 76
Ralstonia solanacearum UW163 0.84 UW163_RS10105 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.73 UW163_RS06635 iron donor protein CyaY — —
Ralstonia solanacearum PSI07 0.84 RPSI07_RS13660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.73 RPSI07_RS10260 iron donor protein CyaY low > 81
Ralstonia solanacearum GMI1000 0.84 RS_RS11015 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.72 RS_RS14920 iron donor protein CyaY — —
Paraburkholderia graminis OAS925 0.76 ABIE53_001541 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.46 ABIE53_003747 CyaY protein — —
Paraburkholderia sabiae LMG 24235 0.76 QEN71_RS24420 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.54 QEN71_RS28070 iron donor protein CyaY low > 153
Herbaspirillum seropedicae SmR1 0.76 HSERO_RS17780 50S rRNA methyltransferase 0.62 HSERO_RS00945 frataxin — —
Paraburkholderia bryophila 376MFSha3.1 0.75 H281DRAFT_04517 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.47 H281DRAFT_05608 CyaY protein — —
Burkholderia phytofirmans PsJN 0.75 BPHYT_RS06385 ribosomal RNA large subunit methyltransferase H 0.50 BPHYT_RS17920 protein CyaY low > 109
Dechlorosoma suillum PS 0.60 Dsui_0451 hypothetical protein 0.44 Dsui_1184 iron donor protein CyaY — —
Variovorax sp. OAS795 0.57 ABID97_RS16715 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.48 ABID97_RS23295 iron donor protein CyaY — —
Variovorax sp. SCN45 0.57 GFF298 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase (EC 2.1.1.177) 0.43 GFF5317 Frataxin homolog CyaY, facilitates Fe-S cluster assembly, interacts with IscS low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.55 GFF4529 LSU m3Psi1915 methyltransferase RlmH 0.47 GFF1339 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly low > 90
Acidovorax sp. GW101-3H11 0.54 Ac3H11_2418 LSU m3Psi1915 methyltransferase RlmH 0.46 Ac3H11_4699 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly — —
Shewanella loihica PV-4 0.50 Shew_2934 SPOUT methyltransferase superfamily protein (RefSeq) 0.43 Shew_0320 frataxin family protein (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.48 CSW01_04865 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.41 CSW01_00625 iron donor protein CyaY — —
Shewanella amazonensis SB2B 0.48 Sama_2587 rRNA large subunit methyltransferase (RefSeq) 0.43 Sama_3252 CyaY protein (RefSeq) — —
Pectobacterium carotovorum WPP14 0.48 HER17_RS15240 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.39 HER17_RS01330 iron donor protein CyaY low > 75
Klebsiella michiganensis M5al 0.48 BWI76_RS08040 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.31 BWI76_RS01190 iron donor protein CyaY low > 92
Escherichia coli BL21 0.48 ECD_00605 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent 0.33 ECD_03682 iron-dependent inhibitor of iron-sulfur cluster formation; frataxin; iron-binding and oxidizing protein — —
Escherichia coli BW25113 0.48 b0636 ybeA hypothetical protein (NCBI) 0.33 b3807 cyaY frataxin-like protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.48 OHPLBJKB_03070 Ribosomal RNA large subunit methyltransferase H 0.35 OHPLBJKB_04246 Iron-sulfur cluster assembly protein CyaY — —
Escherichia coli Nissle 1917 0.48 ECOLIN_RS03465 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.36 ECOLIN_RS21845 iron donor protein CyaY — —
Serratia liquefaciens MT49 0.47 IAI46_05935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.33 IAI46_00705 iron donor protein CyaY low > 86
Dickeya dianthicola ME23 0.47 DZA65_RS06565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.37 DZA65_RS21110 iron donor protein CyaY low > 75
Dickeya dadantii 3937 0.47 DDA3937_RS06175 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.36 DDA3937_RS19910 iron donor protein CyaY — —
Escherichia coli ECOR27 0.47 NOLOHH_23735 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.33 NOLOHH_06585 cyaY iron donor protein CyaY low > 75
Shewanella oneidensis MR-1 0.47 SO1169 conserved hypothetical protein TIGR00246 (NCBI ptt file) 0.47 SO4311 cyaY cyay protein (NCBI ptt file) low > 76
Escherichia coli ECRC100 0.47 OKFHMN_07360 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.32 OKFHMN_14440 cyaY iron donor protein CyaY low > 80
Escherichia coli ECOR38 0.47 HEPCGN_00915 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.34 HEPCGN_13160 cyaY iron donor protein CyaY 0.85 2
Escherichia coli ECRC62 0.47 BNILDI_21745 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.33 BNILDI_04950 cyaY iron donor protein CyaY — —
Escherichia coli ECRC102 0.47 NIAGMN_05415 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.32 NIAGMN_12195 cyaY iron donor protein CyaY — —
Escherichia coli ECRC99 0.47 KEDOAH_20610 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.32 KEDOAH_13710 cyaY iron donor protein CyaY — —
Escherichia coli ECRC98 0.47 JDDGAC_11005 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.32 JDDGAC_18065 cyaY iron donor protein CyaY — —
Enterobacter asburiae PDN3 0.47 EX28DRAFT_2327 rRNA large subunit m3Psi methyltransferase RlmH 0.30 EX28DRAFT_4476 iron donor protein CyaY — —
Escherichia fergusonii Becca 0.47 EFB2_03456 Ribosomal RNA large subunit methyltransferase H 0.33 EFB2_04831 Iron-sulfur cluster assembly protein CyaY low > 86
Escherichia coli ECRC101 0.47 MCAODC_26575 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.32 MCAODC_04945 cyaY iron donor protein CyaY low > 87
Enterobacter sp. TBS_079 0.47 MPMX20_01295 Ribosomal RNA large subunit methyltransferase H 0.30 MPMX20_04468 Iron-sulfur cluster assembly protein CyaY low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF4549 LSU m3Psi1915 methyltransferase RlmH 0.34 GFF233 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly low > 78
Shewanella sp. ANA-3 0.47 Shewana3_0996 rRNA large subunit methyltransferase (RefSeq) 0.47 Shewana3_0388 frataxin family protein (RefSeq) low > 73
Dickeya dianthicola 67-19 0.47 HGI48_RS06220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.37 HGI48_RS20065 iron donor protein CyaY — —
Kangiella aquimarina DSM 16071 0.46 B158DRAFT_0085 rRNA large subunit m3Psi methyltransferase RlmH 0.34 B158DRAFT_0248 iron donor protein CyaY low > 40
Pseudomonas simiae WCS417 0.43 PS417_24730 50S rRNA methyltransferase 0.27 PS417_27570 frataxin — —
Pseudomonas fluorescens SBW25 0.43 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.26 PFLU_RS29255 iron donor protein CyaY low > 109
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.26 PFLU_RS29255 iron donor protein CyaY low > 109
Pseudomonas sp. RS175 0.43 PFR28_03869 Ribosomal RNA large subunit methyltransferase H 0.29 PFR28_04373 Iron-sulfur cluster assembly protein CyaY low > 88
Pseudomonas fluorescens FW300-N2E2 0.43 Pf6N2E2_4996 LSU m3Psi1915 methyltransferase RlmH 0.30 Pf6N2E2_4422 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly low > 103
Pseudomonas fluorescens FW300-N2C3 0.43 AO356_15305 50S rRNA methyltransferase 0.31 AO356_12745 iron donor protein CyaY low > 104
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_4366 Protein of unknown function DUF163 0.29 Psyr_0180 Frataxin-like protein low > 86
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_4366 Protein of unknown function DUF163 0.29 Psyr_0180 Frataxin-like protein — —
Pseudomonas fluorescens FW300-N1B4 0.42 Pf1N1B4_2691 LSU m3Psi1915 methyltransferase RlmH 0.29 Pf1N1B4_2176 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly — —
Pseudomonas fluorescens FW300-N2E3 0.42 AO353_06480 50S rRNA methyltransferase 0.28 AO353_09030 iron donor protein CyaY low > 101
Pseudomonas fluorescens GW456-L13 0.42 PfGW456L13_1359 LSU m3Psi1915 methyltransferase RlmH 0.33 PfGW456L13_848 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly low > 87
Pseudomonas stutzeri RCH2 0.42 Psest_0511 rRNA large subunit m3Psi methyltransferase RlmH 0.29 Psest_3762 iron donor protein CyaY low > 67
Pseudomonas putida KT2440 0.42 PP_4808 23S rRNA m3psi1915 methyltransferase 0.26 PP_5225 frataxin low > 96
Pseudomonas sp. S08-1 0.42 OH686_09325 rRNA large subunit m3Psi methyltransferase RlmH 0.25 OH686_13815 iron donor protein CyaY low > 80

Not shown: 37 genomes with orthologs for RR42_RS04710 only; 0 genomes with orthologs for RR42_RS19045 only