Conservation of cofitness between RR42_RS03405 and RR42_RS17900 in Cupriavidus basilensis FW507-4G11

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS03405 epoxyqueuosine reductase 1.0 RR42_RS17900 lysine transporter LysE 0.32 14
Herbaspirillum seropedicae SmR1 0.59 HSERO_RS04220 epoxyqueuosine reductase 0.34 HSERO_RS09035 lysine transporter LysE low > 78
Paraburkholderia sabiae LMG 24235 0.57 QEN71_RS02745 tRNA epoxyqueuosine(34) reductase QueG 0.49 QEN71_RS18185 LysE family translocator low > 153
Burkholderia phytofirmans PsJN 0.57 BPHYT_RS15960 iron-sulfur cluster binding protein 0.48 BPHYT_RS21565 lysine transporter LysE low > 109
Paraburkholderia graminis OAS925 0.57 ABIE53_003363 epoxyqueuosine reductase 0.48 ABIE53_004256 threonine/homoserine/homoserine lactone efflux protein low > 113
Paraburkholderia bryophila 376MFSha3.1 0.56 H281DRAFT_04128 epoxyqueuosine reductase 0.49 H281DRAFT_01576 Threonine/homoserine/homoserine lactone efflux protein low > 103
Pseudomonas sp. S08-1 0.49 OH686_09500 epoxyqueuosine reductase 0.56 OH686_00600 Transporter, LysE family low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.48 Psyr_0566 4Fe-4S cluster binding protein 0.52 Psyr_3234 Lysine exporter protein (LYSE/YGGA) low > 86
Pseudomonas stutzeri RCH2 0.48 Psest_0677 iron-sulfur cluster binding protein, putative 0.40 Psest_1402 Putative threonine efflux protein low > 67
Pseudomonas syringae pv. syringae B728a 0.48 Psyr_0566 4Fe-4S cluster binding protein 0.52 Psyr_3234 Lysine exporter protein (LYSE/YGGA) low > 86
Pseudomonas fluorescens FW300-N2E2 0.48 Pf6N2E2_3620 Epoxyqueuosine (oQ) reductase QueG 0.46 Pf6N2E2_6076 Transporter, LysE family low > 103
Pseudomonas fluorescens FW300-N1B4 0.48 Pf1N1B4_1418 Epoxyqueuosine (oQ) reductase QueG 0.50 Pf1N1B4_193 Transporter, LysE family low > 87
Pseudomonas fluorescens SBW25 0.48 PFLU_RS02540 tRNA epoxyqueuosine(34) reductase QueG 0.55 PFLU_RS16225 LysE family translocator low > 109
Pseudomonas fluorescens GW456-L13 0.48 PfGW456L13_160 Epoxyqueuosine (oQ) reductase QueG 0.50 PfGW456L13_2315 Transporter, LysE family low > 87
Pseudomonas fluorescens FW300-N2C3 0.48 AO356_08685 epoxyqueuosine reductase 0.47 AO356_20945 lysine transporter LysE low > 104
Pseudomonas fluorescens SBW25-INTG 0.48 PFLU_RS02540 tRNA epoxyqueuosine(34) reductase QueG 0.55 PFLU_RS16225 LysE family translocator low > 109
Pseudomonas fluorescens FW300-N2E3 0.48 AO353_13115 epoxyqueuosine reductase 0.50 AO353_19400 lysine transporter LysE low > 101
Pseudomonas simiae WCS417 0.47 PS417_02460 epoxyqueuosine reductase 0.56 PS417_14335 lysine transporter LysE low > 88
Pseudomonas sp. RS175 0.47 PFR28_05115 Epoxyqueuosine reductase 0.46 PFR28_02911 Cysteine/O-acetylserine efflux protein low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.47 OHPLBJKB_03876 Epoxyqueuosine reductase 0.21 OHPLBJKB_01128 Cysteine/O-acetylserine efflux protein low > 73
Escherichia coli BW25113 0.47 b4166 yjeS predicted Fe-S electron transport protein (NCBI) 0.21 b2578 yfiK neutral amino-acid efflux system (NCBI) low > 76
Escherichia coli ECRC62 0.47 BNILDI_06940 queG tRNA epoxyqueuosine(34) reductase QueG 0.21 BNILDI_11825 eamB cysteine/O-acetylserine transporter low > 75
Escherichia coli ECOR38 0.47 HEPCGN_10515 queG tRNA epoxyqueuosine(34) reductase QueG 0.21 HEPCGN_20475 eamB cysteine/O-acetylserine transporter low > 87
Escherichia coli ECRC100 0.47 OKFHMN_12285 queG tRNA epoxyqueuosine(34) reductase QueG 0.21 OKFHMN_21350 eamB cysteine/O-acetylserine transporter low > 80
Escherichia coli ECOR27 0.47 NOLOHH_04550 queG tRNA epoxyqueuosine(34) reductase QueG 0.21 NOLOHH_13020 eamB cysteine/O-acetylserine transporter low > 75
Escherichia coli ECRC102 0.47 NIAGMN_10135 queG tRNA epoxyqueuosine(34) reductase QueG 0.21 NIAGMN_19120 eamB cysteine/O-acetylserine transporter — —
Escherichia fergusonii Becca 0.47 EFB2_04369 Epoxyqueuosine reductase 0.21 EFB2_01318 Cysteine/O-acetylserine efflux protein low > 86
Escherichia coli BL21 0.47 ECD_04033 epoxyqueuosine reductase, cobalamine-stimulated; queosine biosynthesis 0.21 ECD_02472 cysteine and O-acetylserine exporter low > 61
Escherichia coli ECRC99 0.47 KEDOAH_15870 queG tRNA epoxyqueuosine(34) reductase QueG 0.21 KEDOAH_06870 eamB cysteine/O-acetylserine transporter — —
Escherichia coli ECRC98 0.47 JDDGAC_15925 queG tRNA epoxyqueuosine(34) reductase QueG 0.21 JDDGAC_25015 eamB cysteine/O-acetylserine transporter low > 86
Pseudomonas putida KT2440 0.47 PP_4900 epoxyqueuosine reductase 0.52 PP_3405 conserved membrane protein of unknown function low > 96
Escherichia coli Nissle 1917 0.47 ECOLIN_RS24200 tRNA epoxyqueuosine(34) reductase QueG 0.21 ECOLIN_RS14590 cysteine/O-acetylserine transporter low > 55
Escherichia coli ECRC101 0.47 MCAODC_02800 queG tRNA epoxyqueuosine(34) reductase QueG 0.21 MCAODC_11880 eamB cysteine/O-acetylserine transporter low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF819 Epoxyqueuosine (oQ) reductase QueG 0.21 GFF2102 Transporter, LysE family low > 78
Dickeya dianthicola 67-19 0.47 HGI48_RS18575 tRNA epoxyqueuosine(34) reductase QueG 0.29 HGI48_RS19540 LysE family translocator low > 71
Rhodanobacter denitrificans FW104-10B01 0.47 LRK54_RS15130 tRNA epoxyqueuosine(34) reductase QueG 0.21 LRK54_RS14635 LysE family translocator low > 59
Rhodanobacter denitrificans MT42 0.46 LRK55_RS14845 tRNA epoxyqueuosine(34) reductase QueG 0.21 LRK55_RS14350 LysE family translocator low > 63
Dickeya dianthicola ME23 0.46 DZA65_RS19710 tRNA epoxyqueuosine(34) reductase QueG 0.32 DZA65_RS07375 LysE family translocator low > 75
Enterobacter asburiae PDN3 0.46 EX28DRAFT_3363 epoxyqueuosine reductase 0.23 EX28DRAFT_3331 Putative threonine efflux protein 0.49 60
Serratia liquefaciens MT49 0.46 IAI46_01595 tRNA epoxyqueuosine(34) reductase QueG 0.27 IAI46_00170 LysE family translocator low > 86
Dickeya dadantii 3937 0.46 DDA3937_RS18645 tRNA epoxyqueuosine(34) reductase QueG 0.28 DDA3937_RS19420 LysE family translocator low > 74
Pantoea sp. MT58 0.46 IAI47_02560 tRNA epoxyqueuosine(34) reductase QueG 0.31 IAI47_01990 LysE family translocator low > 76
Vibrio cholerae E7946 ATCC 55056 0.46 CSW01_01810 tRNA epoxyqueuosine(34) reductase QueG 0.40 CSW01_08610 LysE family translocator low > 62
Rahnella sp. WP5 0.45 EX31_RS08850 tRNA epoxyqueuosine(34) reductase QueG 0.30 EX31_RS05815 LysE family translocator low > 89
Pectobacterium carotovorum WPP14 0.45 HER17_RS02555 tRNA epoxyqueuosine(34) reductase QueG 0.28 HER17_RS05620 LysE family translocator low > 75
Shewanella loihica PV-4 0.45 Shew_2979 putative iron-sulfur cluster binding protein (RefSeq) 0.40 Shew_1684 lysine exporter protein LysE/YggA (RefSeq) 0.33 25
Shewanella sp. ANA-3 0.44 Shewana3_0745 putative iron-sulfur cluster binding protein (RefSeq) 0.43 Shewana3_2742 lysine exporter protein LysE/YggA (RefSeq) low > 73
Shewanella oneidensis MR-1 0.44 SO3861 iron-sulfur cluster-binding protein (NCBI ptt file) 0.43 SO1716 transporter, LysE family (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.44 Sama_2625 iron-sulfur cluster-binding protein (RefSeq) 0.31 Sama_2015 hypothetical protein (RefSeq) low > 62
Sinorhizobium meliloti 1021 0.32 SMc00406 4Fe-4S ferredoxin 0.48 SMc01425 hypothetical protein low > 103
Rhizobium sp. OAE497 0.32 ABIE40_RS01310 tRNA epoxyqueuosine(34) reductase QueG 0.43 ABIE40_RS11480 LysE family translocator low > 107
Dinoroseobacter shibae DFL-12 0.30 Dshi_3307 domain of unknown function DUF1730 (RefSeq) 0.40 Dshi_2478 Lysine exporter protein (LYSE/YGGA) (RefSeq) low > 64
Sphingomonas koreensis DSMZ 15582 0.29 Ga0059261_1058 epoxyqueuosine reductase 0.49 Ga0059261_0034 Putative threonine efflux protein low > 68

Not shown: 27 genomes with orthologs for RR42_RS03405 only; 3 genomes with orthologs for RR42_RS17900 only