Conservation of cofitness between QEN71_RS03190 and QEN71_RS04575 in Paraburkholderia sabiae LMG 24235

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Paraburkholderia sabiae LMG 24235 1.0 QEN71_RS03190 amino acid permease 1.0 QEN71_RS04575 RNA polymerase sigma factor RpoE 0.65 14
Burkholderia phytofirmans PsJN 0.88 BPHYT_RS15500 aromatic amino acid transporter 0.99 BPHYT_RS14405 RNA polymerase sigma factor RpoE — —
Paraburkholderia graminis OAS925 0.86 ABIE53_003265 aromatic amino acid transport protein AroP 0.99 ABIE53_003043 RNA polymerase sigma-70 factor (ECF subfamily) low > 113
Paraburkholderia bryophila 376MFSha3.1 0.84 H281DRAFT_04042 phenylacetate transporter (from data) 0.99 H281DRAFT_04355 RNA polymerase, sigma-24 subunit, RpoE — —
Escherichia coli BW25113 0.71 b0112 aroP aromatic amino acid transporter (NCBI) 0.58 b2573 rpoE RNA polymerase, sigma 24 (sigma E) factor (NCBI) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_03549 Aromatic amino acid transport protein AroP 0.58 OHPLBJKB_01134 ECF RNA polymerase sigma-E factor — —
Escherichia coli ECOR38 0.71 HEPCGN_08495 aroP aromatic amino acid transporter AroP 0.58 HEPCGN_20520 rpoE RNA polymerase sigma factor RpoE — —
Serratia liquefaciens MT49 0.71 IAI46_21335 amino acid permease 0.58 IAI46_19585 RNA polymerase sigma factor RpoE — —
Escherichia coli BL21 0.71 ECD_00111 aromatic amino acid transporter 0.58 ECD_02467 RNA polymerase sigma E factor — —
Escherichia coli ECOR27 0.71 NOLOHH_02860 aroP aromatic amino acid transporter AroP 0.58 NOLOHH_13050 rpoE RNA polymerase sigma factor RpoE — —
Escherichia coli ECRC62 0.71 BNILDI_08750 aroP aromatic amino acid transporter AroP 0.58 BNILDI_11850 rpoE RNA polymerase sigma factor RpoE — —
Escherichia coli ECRC100 0.71 OKFHMN_10515 aroP aromatic amino acid transporter AroP 0.58 OKFHMN_21375 rpoE RNA polymerase sigma factor RpoE — —
Escherichia coli ECRC98 0.71 JDDGAC_14110 aroP aromatic amino acid transporter AroP 0.58 JDDGAC_25040 rpoE RNA polymerase sigma factor RpoE — —
Escherichia coli ECRC99 0.71 KEDOAH_17640 aroP aromatic amino acid transporter AroP 0.58 KEDOAH_06845 rpoE RNA polymerase sigma factor RpoE — —
Dickeya dianthicola 67-19 0.71 HGI48_RS17580 amino acid permease 0.58 HGI48_RS15850 RNA polymerase sigma factor RpoE low > 71
Escherichia coli Nissle 1917 0.71 ECOLIN_RS00600 aromatic amino acid transporter AroP 0.58 ECOLIN_RS14560 RNA polymerase sigma factor RpoE — —
Dickeya dadantii 3937 0.71 DDA3937_RS17935 amino acid permease 0.59 DDA3937_RS15765 RNA polymerase sigma factor RpoE low > 74
Escherichia coli ECRC102 0.71 NIAGMN_08365 aroP aromatic amino acid transporter AroP 0.58 NIAGMN_19145 rpoE RNA polymerase sigma factor RpoE — —
Escherichia coli ECRC101 0.71 MCAODC_01030 aroP aromatic amino acid transporter AroP 0.58 MCAODC_11905 rpoE RNA polymerase sigma factor RpoE — —
Dickeya dianthicola ME23 0.71 DZA65_RS19010 amino acid permease 0.58 DZA65_RS16930 RNA polymerase sigma factor RpoE low > 75
Pectobacterium carotovorum WPP14 0.71 HER17_RS03280 amino acid permease 0.57 HER17_RS05780 RNA polymerase sigma factor RpoE — —
Escherichia fergusonii Becca 0.71 EFB2_03937 Aromatic amino acid transport protein AroP 0.58 EFB2_01323 ECF RNA polymerase sigma-E factor — —
Klebsiella michiganensis M5al 0.70 BWI76_RS04870 aromatic amino acid transporter AroP 0.58 BWI76_RS21355 RNA polymerase sigma factor RpoE — —
Enterobacter asburiae PDN3 0.70 EX28DRAFT_3707 Gamma-aminobutyrate permease and related permeases 0.58 EX28DRAFT_0072 RNA polymerase sigma factor RpoE — —
Pantoea sp. MT58 0.69 IAI47_15820 aromatic amino acid transporter AroP 0.58 IAI47_04850 RNA polymerase sigma factor RpoE — —
Erwinia tracheiphila SCR3 0.69 LU632_RS03070 aroP aromatic amino acid transporter AroP 0.58 LU632_RS15425 rpoE RNA polymerase sigma factor RpoE low > 74
Enterobacter sp. TBS_079 0.69 MPMX20_00805 Aromatic amino acid transport protein AroP 0.58 MPMX20_03444 ECF RNA polymerase sigma-E factor — —
Rahnella sp. WP5 0.69 EX31_RS03490 aromatic amino acid transporter AroP 0.58 EX31_RS21800 RNA polymerase sigma factor RpoE — —
Pseudomonas simiae WCS417 0.68 PS417_23700 aromatic amino acid transporter 0.58 PS417_07120 RNA polymerase sigma-H factor low > 88
Pseudomonas fluorescens FW300-N2E3 0.68 AO353_18555 aromatic amino acid transporter 0.58 AO353_17625 RNA polymerase subunit sigma low > 101
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.68 GFF124 Aromatic amino acid transport protein AroP 0.58 GFF2107 RNA polymerase sigma factor RpoE — —
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_4291 L-tryptophan transporter (from data) 0.58 PfGW456L13_4516 RNA polymerase sigma-H factor AlgT low > 87
Pseudomonas fluorescens SBW25 0.68 PFLU_RS25510 amino acid permease 0.58 PFLU_RS07230 RNA polymerase sigma factor RpoE low > 109
Pseudomonas fluorescens SBW25-INTG 0.68 PFLU_RS25510 amino acid permease 0.58 PFLU_RS07230 RNA polymerase sigma factor RpoE low > 109
Pseudomonas fluorescens FW300-N2C3 0.67 AO356_18530 L-tyrosine transporter (from data) 0.58 AO356_04575 RNA polymerase subunit sigma low > 104
Cupriavidus basilensis FW507-4G11 0.67 RR42_RS33495 L-phenylalanine:H+ symporter AroP (from data) 0.86 RR42_RS14080 RNA polymerase sigma factor RpoE low > 128
Pseudomonas stutzeri RCH2 0.67 Psest_1697 Gamma-aminobutyrate permease and related permeases 0.59 Psest_3100 RNA polymerase sigma factor RpoE low > 67
Pseudomonas sp. S08-1 0.67 OH686_21130 Aromatic amino acid transport protein AroP 0.58 OH686_20045 RNA polymerase sigma factor RpoE low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.67 Psyr_3580 aromatic amino acid:proton symporter, AAT family 0.58 Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE low > 86
Pseudomonas syringae pv. syringae B728a 0.67 Psyr_3580 aromatic amino acid:proton symporter, AAT family 0.58 Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE low > 86
Pseudomonas fluorescens FW300-N1B4 0.67 Pf1N1B4_3559 Aromatic amino acid transport protein AroP 0.58 Pf1N1B4_3323 RNA polymerase sigma-H factor AlgT — —
Pseudomonas sp. RS175 0.67 PFR28_03311 Aromatic amino acid transport protein AroP 0.58 PFR28_00690 RNA polymerase sigma-H factor low > 88
Pseudomonas fluorescens FW300-N2E2 0.66 Pf6N2E2_5633 Aromatic amino acid transport protein AroP 0.58 Pf6N2E2_2756 RNA polymerase sigma-H factor AlgT low > 103
Pseudomonas putida KT2440 0.66 PP_0927 aromatic amino acid transport protein 0.58 PP_1427 RNA polymerase sigma E factor low > 96
Castellaniella sp019104865 MT123 0.52 ABCV34_RS10320 amino acid permease 0.69 ABCV34_RS08355 RNA polymerase sigma factor RpoE low > 48
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS05185 amino acid permease 0.59 ABZR86_RS07180 RNA polymerase sigma factor RpoE low > 74
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS20930 amino acid permease 0.86 RALBFv3_RS14445 RNA polymerase sigma factor RpoE low > 76
Ralstonia solanacearum UW163 0.44 UW163_RS22065 amino acid permease 0.86 UW163_RS11910 RNA polymerase sigma factor RpoE — —
Rhodanobacter denitrificans MT42 0.43 LRK55_RS02640 amino acid permease 0.61 LRK55_RS16655 RNA polymerase sigma factor RpoE — —
Rhodanobacter denitrificans FW104-10B01 0.42 LRK54_RS02890 amino acid permease 0.61 LRK54_RS16940 RNA polymerase sigma factor RpoE low > 59
Bifidobacterium breve UCC2003 0.41 BBR_RS20055 amino acid permease 0.21 BBR_RS15930 RNA polymerase sigma factor low > 34
Rhodanobacter sp. FW510-T8 0.41 OKGIIK_09870 Amino acid permease 0.61 OKGIIK_07900 rpoE RNA polymerase sigma factor RpoE low > 52
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS09765 amino acid permease 0.85 ABZR87_RS10165 RNA polymerase sigma factor RpoE low > 80
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.804.1 D-serine/D-alanine/glycine transporter 0.58 Xcc-8004.3681.1 RNA polymerase sigma factor RpoE low > 74
Ralstonia solanacearum PSI07 0.26 RPSI07_RS16340 amino acid permease 0.86 RPSI07_RS19015 RNA polymerase sigma factor RpoE low > 81
Ralstonia solanacearum GMI1000 0.26 RS_RS08880 amino acid permease 0.86 RS_RS05225 RNA polymerase sigma factor RpoE low > 80

Not shown: 3 genomes with orthologs for QEN71_RS03190 only; 27 genomes with orthologs for QEN71_RS04575 only