Conservation of cofitness between QEN71_RS00175 and QEN71_RS04085 in Paraburkholderia sabiae LMG 24235

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Paraburkholderia sabiae LMG 24235 1.0 QEN71_RS00175 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 1.0 QEN71_RS04085 3-phosphoshikimate 1-carboxyvinyltransferase 0.61 12
Paraburkholderia bryophila 376MFSha3.1 0.82 H281DRAFT_02237 16S rRNA (cytosine967-C5)-methyltransferase 0.91 H281DRAFT_03922 3-phosphoshikimate 1-carboxyvinyltransferase — —
Paraburkholderia graminis OAS925 0.80 ABIE53_000392 16S rRNA (cytosine967-C5)-methyltransferase 0.88 ABIE53_003154 3-phosphoshikimate 1-carboxyvinyltransferase — —
Burkholderia phytofirmans PsJN 0.80 BPHYT_RS01475 16S rRNA methyltransferase 0.90 BPHYT_RS14895 3-phosphoshikimate 1-carboxyvinyltransferase low > 109
Ralstonia solanacearum PSI07 0.48 RPSI07_RS23575 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.69 RPSI07_RS19695 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia sp. UNC404CL21Col 0.47 ABZR87_RS04950 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.71 ABZR87_RS09465 3-phosphoshikimate 1-carboxyvinyltransferase 0.38 32
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS09790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.69 RALBFv3_RS13775 3-phosphoshikimate 1-carboxyvinyltransferase 0.37 46
Ralstonia solanacearum UW163 0.46 UW163_RS03790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.69 UW163_RS16035 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum GMI1000 0.46 RS_RS00375 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.70 RS_RS04510 3-phosphoshikimate 1-carboxyvinyltransferase low > 80
Cupriavidus basilensis FW507-4G11 0.45 RR42_RS20450 16S rRNA methyltransferase 0.68 RR42_RS04475 3-phosphoshikimate 1-carboxyvinyltransferase low > 128
Herbaspirillum seropedicae SmR1 0.41 HSERO_RS00355 methyltransferase 0.63 HSERO_RS18420 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dickeya dianthicola 67-19 0.31 HGI48_RS19225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.52 HGI48_RS09685 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dickeya dianthicola ME23 0.31 DZA65_RS20350 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.52 DZA65_RS09995 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dickeya dadantii 3937 0.31 DDA3937_RS19135 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.52 DDA3937_RS09675 3-phosphoshikimate 1-carboxyvinyltransferase — —
Enterobacter sp. TBS_079 0.30 MPMX20_04196 Ribosomal RNA small subunit methyltransferase B 0.55 MPMX20_01567 3-phosphoshikimate 1-carboxyvinyltransferase low > 85
Escherichia coli ECRC62 0.30 BNILDI_02200 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.54 BNILDI_20300 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 75
Escherichia coli ECOR38 0.30 HEPCGN_16350 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.54 HEPCGN_23035 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 87
Escherichia coli ECOR27 0.30 NOLOHH_09320 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.54 NOLOHH_22045 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 75
Escherichia coli BW25113 0.30 b3289 rsmB 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) 0.54 b0908 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) low > 76
Escherichia coli BL21 0.30 ECD_03139 16S rRNA m(5)C967 methyltransferase, SAM-dependent 0.54 ECD_00912 5-enolpyruvylshikimate-3-phosphate synthetase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.30 OHPLBJKB_00415 Ribosomal RNA small subunit methyltransferase B 0.54 OHPLBJKB_02760 3-phosphoshikimate 1-carboxyvinyltransferase 0.78 11
Escherichia fergusonii Becca 0.29 EFB2_00535 Ribosomal RNA small subunit methyltransferase B 0.54 EFB2_03156 3-phosphoshikimate 1-carboxyvinyltransferase low > 86
Escherichia coli Nissle 1917 0.29 ECOLIN_RS18875 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.54 ECOLIN_RS04810 3-phosphoshikimate 1-carboxyvinyltransferase low > 55
Escherichia coli ECRC98 0.29 JDDGAC_21150 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.54 JDDGAC_09095 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 86
Escherichia coli ECRC102 0.29 NIAGMN_15290 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.54 NIAGMN_03205 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECRC99 0.29 KEDOAH_10620 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.54 KEDOAH_22250 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECRC101 0.29 MCAODC_08050 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.54 MCAODC_24875 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 87
Escherichia coli ECRC100 0.29 OKFHMN_17520 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.54 OKFHMN_05485 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 80
Erwinia tracheiphila SCR3 0.29 LU632_RS22480 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.50 LU632_RS09795 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 74
Pantoea sp. MT58 0.29 IAI47_02280 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.53 IAI47_12860 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rahnella sp. WP5 0.29 EX31_RS15985 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.54 EX31_RS18250 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pectobacterium carotovorum WPP14 0.29 HER17_RS02215 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.51 HER17_RS12285 3-phosphoshikimate 1-carboxyvinyltransferase low > 75
Enterobacter asburiae PDN3 0.29 EX28DRAFT_0039 16S rRNA (cytosine(967)-C(5))-methyltransferase 0.55 EX28DRAFT_2027 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.29 GFF2390 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 0.54 GFF3665 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) low > 78
Klebsiella michiganensis M5al 0.28 BWI76_RS25680 16S rRNA m5C967 methyltransferase 0.54 BWI76_RS09760 3-phosphoshikimate 1-carboxyvinyltransferase low > 92
Shewanella amazonensis SB2B 0.27 Sama_0041 sun protein (RefSeq) 0.56 Sama_1734 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) low > 62
Serratia liquefaciens MT49 0.27 IAI46_23275 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.54 IAI46_08640 3-phosphoshikimate 1-carboxyvinyltransferase low > 86
Alteromonas macleodii MIT1002 0.27 MIT1002_00018 Ribosomal RNA small subunit methyltransferase B 0.53 MIT1002_02191 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.26 Psyr_0017 16S rRNA m(5)C-967 methyltransferase 0.26 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.26 Psyr_0017 16S rRNA m(5)C-967 methyltransferase 0.26 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas simiae WCS417 0.25 PS417_00085 16S rRNA methyltransferase 0.22 PS417_12855 3-phosphoshikimate 1-carboxyvinyltransferase low > 88
Pseudomonas fluorescens SBW25 0.25 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.22 PFLU_RS13540 3-phosphoshikimate 1-carboxyvinyltransferase low > 109
Pseudomonas fluorescens SBW25-INTG 0.25 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.22 PFLU_RS13540 3-phosphoshikimate 1-carboxyvinyltransferase low > 109
Shewanella loihica PV-4 0.25 Shew_3738 sun protein (RefSeq) 0.55 Shew_1952 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) low > 60
Shewanella sp. ANA-3 0.25 Shewana3_0033 sun protein (RefSeq) 0.55 Shewana3_1975 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.24 SO0030 sun sun protein (NCBI ptt file) 0.55 SO2404 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI ptt file) low > 76
Lysobacter sp. OAE881 0.23 ABIE51_RS02255 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.19 ABIE51_RS12135 3-phosphoshikimate 1-carboxyvinyltransferase — —
Xanthomonas campestris pv. campestris strain 8004 0.20 Xcc-8004.4741.1 hypothetical protein 0.15 Xcc-8004.3281.1 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) low > 74
Caulobacter crescentus NA1000 0.18 CCNA_00101 16S rRNA m5C methyltransferase RsmB 0.15 CCNA_03704 3-phosphoshikimate 1-carboxyvinyltransferase — —
Caulobacter crescentus NA1000 Δfur 0.18 CCNA_00101 16S rRNA m5C methyltransferase RsmB 0.15 CCNA_03704 3-phosphoshikimate 1-carboxyvinyltransferase low > 67
Rhodopseudomonas palustris CGA009 0.17 TX73_000155 transcription antitermination factor NusB 0.13 TX73_000320 3-phosphoshikimate 1-carboxyvinyltransferase — —
Azospirillum sp. SherDot2 0.16 MPMX19_02327 Ribosomal RNA small subunit methyltransferase B 0.12 MPMX19_02233 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dinoroseobacter shibae DFL-12 0.16 Dshi_3033 Fmu (Sun) domain protein (RefSeq) 0.13 Dshi_1022 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Azospirillum brasilense Sp245 0.16 AZOBR_RS00235 MFS transporter 0.13 AZOBR_RS03090 3-phosphoshikimate 1-carboxyvinyltransferase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.13 A4249_RS13165 RsmB/NOP family class I SAM-dependent RNA methyltransferase 0.15 A4249_RS10920 3-phosphoshikimate 1-carboxyvinyltransferase — —

Not shown: 17 genomes with orthologs for QEN71_RS00175 only; 32 genomes with orthologs for QEN71_RS04085 only