Conservation of cofitness between Psyr_4018 and Psyr_0025 in Pseudomonas syringae pv. syringae B728a

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_4018 Formyltetrahydrofolate deformylase 1.0 Psyr_0025 shikimate dehydrogenase 0.75 3
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_4018 Formyltetrahydrofolate deformylase 1.00 Psyr_0025 shikimate dehydrogenase low > 86
Pseudomonas lactucae CFBP13502 0.92 GEMAOFIL_04667 Formyltetrahydrofolate deformylase 0.81 GEMAOFIL_00231 Shikimate dehydrogenase (NADP(+)) — —
Pseudomonas fluorescens FW300-N2E2 0.92 Pf6N2E2_5508 Formyltetrahydrofolate deformylase (EC 3.5.1.10) 0.81 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Pseudomonas fluorescens SBW25 0.92 PFLU_RS24200 formyltetrahydrofolate deformylase 0.81 PFLU_RS00120 shikimate dehydrogenase — —
Pseudomonas fluorescens SBW25-INTG 0.92 PFLU_RS24200 formyltetrahydrofolate deformylase 0.81 PFLU_RS00120 shikimate dehydrogenase — —
Pseudomonas sp. RS175 0.92 PFR28_03439 Formyltetrahydrofolate deformylase 0.81 PFR28_04655 Shikimate dehydrogenase (NADP(+)) — —
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_665 Formyltetrahydrofolate deformylase (EC 3.5.1.10) 0.83 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Pseudomonas fluorescens FW300-N2E3 0.92 AO353_03710 formyltetrahydrofolate deformylase 0.82 AO353_10670 shikimate dehydrogenase low > 101
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_17895 formyltetrahydrofolate deformylase 0.81 AO356_11315 shikimate dehydrogenase — —
Pseudomonas simiae WCS417 0.91 PS417_22565 formyltetrahydrofolate deformylase 0.83 PS417_00125 shikimate dehydrogenase — —
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_1825 Formyltetrahydrofolate deformylase (EC 3.5.1.10) 0.82 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Pseudomonas sp. S08-1 0.91 OH686_18295 formyltetrahydrofolate deformylase 0.75 OH686_12485 Shikimate 5-dehydrogenase I alpha low > 80
Pseudomonas sp. DMC3 0.89 GFF5213 Formyltetrahydrofolate deformylase 0.81 GFF600 Shikimate dehydrogenase (NADP(+)) — —
Pseudomonas putida KT2440 0.89 PP_1367 formyltetrahydrofolate hydrolase 0.77 PP_0074 shikimate 5-dehydrogenase — —
Pseudomonas sp. SVBP6 0.89 COO64_RS12215 purU formyltetrahydrofolate deformylase 0.80 COO64_RS02250 aroE shikimate dehydrogenase — —
Pseudomonas sp. BP01 0.88 JOY50_RS14345 purU formyltetrahydrofolate deformylase 0.77 JOY50_RS08210 aroE shikimate dehydrogenase — —
Pseudomonas segetis P6 0.87 MPMX49_03632 Formyltetrahydrofolate deformylase 0.76 MPMX49_00282 Shikimate dehydrogenase (NADP(+)) — —
Pseudomonas aeruginosa PA14 0.86 IKLFDK_02535 formyltetrahydrofolate deformylase 0.70 IKLFDK_25435 shikimate dehydrogenase — —
Pseudomonas stutzeri RCH2 0.86 Psest_3178 formyltetrahydrofolate deformylase 0.73 Psest_0029 shikimate 5-dehydrogenase — —
Dechlorosoma suillum PS 0.67 Dsui_0762 formyltetrahydrofolate deformylase 0.56 Dsui_0443 shikimate 5-dehydrogenase — —
Paraburkholderia sabiae LMG 24235 0.66 QEN71_RS33925 formyltetrahydrofolate deformylase 0.49 QEN71_RS27130 shikimate dehydrogenase low > 153
Marinobacter adhaerens HP15 0.61 HP15_1358 formyltetrahydrofolate deformylase 0.52 HP15_3750 shikimate dehydrogenase — —
Alteromonas macleodii MIT1002 0.60 MIT1002_00404 Formyltetrahydrofolate deformylase 0.37 MIT1002_00029 Shikimate dehydrogenase — —
Methylophilus sp. DMC18 0.50 GFF2208 Formyltetrahydrofolate deformylase 0.44 GFF2019 Shikimate dehydrogenase (NADP(+)) — —
Sphingomonas koreensis DSMZ 15582 0.46 Ga0059261_1821 formyltetrahydrofolate deformylase (EC 3.5.1.10) 0.16 Ga0059261_2194 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.75 68
Synechocystis sp000284455 PCC 6803 0.45 SGL_RS13830 formyltetrahydrofolate deformylase 0.17 SGL_RS17415 shikimate dehydrogenase — —
Acinetobacter radioresistens SK82 0.41 MPMX26_00378 Formyltetrahydrofolate deformylase 0.35 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) low > 36
Acinetobacter baumannii LAC-4 0.41 RR41_RS16720 formyltetrahydrofolate deformylase 0.36 RR41_RS01995 shikimate dehydrogenase — —
Rahnella sp. WP5 0.40 EX31_RS10115 formyltetrahydrofolate deformylase 0.44 EX31_RS15950 shikimate dehydrogenase — —
Dickeya dadantii 3937 0.39 DDA3937_RS10325 formyltetrahydrofolate deformylase 0.46 DDA3937_RS19100 shikimate dehydrogenase — —
Dickeya dianthicola ME23 0.39 DZA65_RS10810 formyltetrahydrofolate deformylase 0.47 DZA65_RS20315 shikimate dehydrogenase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.39 GFF2756 Formyltetrahydrofolate deformylase (EC 3.5.1.10) 0.46 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 78
Erwinia tracheiphila SCR3 0.39 LU632_RS12940 purU formyltetrahydrofolate deformylase 0.44 LU632_RS22445 aroE shikimate dehydrogenase low > 74
Erwinia amylovora T8 0.39 OLJFJH_13275 formyltetrahydrofolate deformylase 0.43 OLJFJH_03685 shikimate dehydrogenase — —
Erwinia tracheiphila HP pepo 2.2 0.39 IJEDHG_22670 purU formyltetrahydrofolate deformylase 0.44 IJEDHG_12505 aroE shikimate dehydrogenase low > 61
Dickeya dianthicola 67-19 0.39 HGI48_RS10335 formyltetrahydrofolate deformylase 0.46 HGI48_RS19190 shikimate dehydrogenase — —
Klebsiella pneumoniae MKP103 0.39 KDGMDA_24520 formyltetrahydrofolate deformylase 0.48 KDGMDA_06515 shikimate dehydrogenase low > 95
Escherichia coli ECRC101 0.39 MCAODC_21690 purU formyltetrahydrofolate deformylase 0.49 MCAODC_08085 aroE shikimate dehydrogenase low > 88
Escherichia coli ECRC99 0.39 KEDOAH_25565 purU formyltetrahydrofolate deformylase 0.49 KEDOAH_10585 aroE shikimate dehydrogenase — —
Escherichia coli ECRC98 0.39 JDDGAC_06005 purU formyltetrahydrofolate deformylase 0.49 JDDGAC_21185 aroE shikimate dehydrogenase low > 87
Escherichia fergusonii Becca 0.39 EFB2_02694 Formyltetrahydrofolate deformylase 0.48 EFB2_00542 Shikimate dehydrogenase (NADP(+)) low > 86
Escherichia coli ECOR27 0.39 NOLOHH_20480 purU formyltetrahydrofolate deformylase 0.49 NOLOHH_09355 aroE shikimate dehydrogenase low > 76
Escherichia coli ECOR38 0.39 HEPCGN_25030 purU formyltetrahydrofolate deformylase 0.47 HEPCGN_16385 aroE shikimate dehydrogenase 0.42 83
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_02453 Formyltetrahydrofolate deformylase 0.49 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) low > 74
Escherichia coli Nissle 1917 0.39 ECOLIN_RS07460 formyltetrahydrofolate deformylase 0.49 ECOLIN_RS18840 shikimate dehydrogenase low > 55
Escherichia coli BL21 0.39 ECD_01208 formyltetrahydrofolate hydrolase 0.49 ECD_03132 dehydroshikimate reductase, NAD(P)-binding low > 61
Escherichia coli ECRC102 0.39 NIAGMN_27665 purU formyltetrahydrofolate deformylase 0.49 NIAGMN_15325 aroE shikimate dehydrogenase low > 80
Escherichia coli ECRC100 0.39 OKFHMN_28570 purU formyltetrahydrofolate deformylase 0.49 OKFHMN_17565 aroE shikimate dehydrogenase low > 79
Enterobacter asburiae PDN3 0.38 EX28DRAFT_0858 formyltetrahydrofolate deformylase 0.46 EX28DRAFT_0046 shikimate dehydrogenase low > 76
Pantoea sp. MT58 0.38 IAI47_09010 formyltetrahydrofolate deformylase 0.49 IAI47_02315 shikimate dehydrogenase — —
Escherichia coli BW25113 0.38 b1232 purU formyltetrahydrofolate deformylase (NCBI) 0.49 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.67 43
Enterobacter sp. TBS_079 0.38 MPMX20_02596 Formyltetrahydrofolate deformylase 0.47 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.40 72
Pantoea agglomerans CFBP13505 P0401 0.38 PagCFBP13505_RS02850 formyltetrahydrofolate deformylase 0.47 PagCFBP13505_RS22560 shikimate dehydrogenase — —
Klebsiella michiganensis M5al 0.38 BWI76_RS17290 formyltetrahydrofolate deformylase 0.47 BWI76_RS25645 shikimate dehydrogenase 0.31 65
Vibrio cholerae E7946 ATCC 55056 0.38 CSW01_09940 formyltetrahydrofolate deformylase 0.58 CSW01_00280 shikimate dehydrogenase low > 62
Escherichia coli ECRC62 0.38 BNILDI_18635 purU formyltetrahydrofolate deformylase 0.49 BNILDI_02165 aroE shikimate dehydrogenase 0.53 45
Serratia liquefaciens MT49 0.38 IAI46_14265 formyltetrahydrofolate deformylase 0.46 IAI46_23240 shikimate dehydrogenase low > 86
Pectobacterium carotovorum WPP14 0.38 HER17_RS11065 formyltetrahydrofolate deformylase 0.46 HER17_RS02250 shikimate dehydrogenase 0.70 64
Shewanella amazonensis SB2B 0.37 Sama_1134 purU formyltetrahydrofolate deformylase (RefSeq) 0.47 Sama_0052 shikimate dehydrogenase (RefSeq) low > 62
Pedobacter sp. GW460-11-11-14-LB5 0.37 CA265_RS21155 formyltetrahydrofolate deformylase 0.13 CA265_RS19745 shikimate dehydrogenase (EC 1.1.1.25) (from data) — —
Shewanella sp. ANA-3 0.36 Shewana3_2821 purU formyltetrahydrofolate deformylase (RefSeq) 0.53 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) low > 73
Mucilaginibacter yixingensis YX-36 DSM 26809 0.36 ABZR88_RS14140 formyltetrahydrofolate deformylase 0.12 ABZR88_RS20055 shikimate dehydrogenase — —
Shewanella oneidensis MR-1 0.36 SO1624 purU formyltetrahydrofolate deformylase (NCBI ptt file) 0.50 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.34 Shew_2640 purU formyltetrahydrofolate deformylase (RefSeq) 0.51 Shew_3727 shikimate 5-dehydrogenase (RefSeq) low > 60

Not shown: 8 genomes with orthologs for Psyr_4018 only; 42 genomes with orthologs for Psyr_0025 only