| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens FW300-N2E2 | 1.0 | Pf6N2E2_2785 | | Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) | 1.0 | Pf6N2E2_2849 | | Chromosome initiation inhibitor | 0.33 | 5 |
| Pseudomonas fluorescens FW300-N2C3 | 0.93 | AO356_04690 | | 16S rRNA pseudouridine(516) synthase | 0.94 | AO356_04995 | | LysR family transcriptional regulator | low | > 104 |
| Pseudomonas sp. RS175 | 0.92 | PFR28_00665 | | Ribosomal small subunit pseudouridine synthase A | 0.93 | PFR28_00608 | | HTH-type transcriptional regulator ArgP | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.89 | Pf1N1B4_3297 | | Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) | 0.93 | Pf1N1B4_708 | | Chromosome initiation inhibitor | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.86 | AO353_17535 | | 16S rRNA pseudouridine(516) synthase | 0.94 | AO353_03915 | | LysR family transcriptional regulator | low | > 101 |
| Pseudomonas fluorescens SBW25 | 0.84 | PFLU_RS07085 | | pseudouridine synthase | 0.90 | PFLU_RS23790 | | LysR family transcriptional regulator ArgP | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.84 | PFLU_RS07085 | | pseudouridine synthase | 0.90 | PFLU_RS23790 | | LysR family transcriptional regulator ArgP | low | > 109 |
| Pseudomonas simiae WCS417 | 0.84 | PS417_07010 | | pseudouridine synthase | 0.90 | PS417_22165 | | LysR family transcriptional regulator | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.82 | PfGW456L13_4535 | | Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) | 0.93 | PfGW456L13_1782 | | Chromosome initiation inhibitor | low | > 87 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.77 | Psyr_3981 | | ribosomal small subunit pseudouridine synthase A | 0.82 | Psyr_4057 | | regulatory protein, LysR:LysR, substrate-binding protein | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.77 | Psyr_3981 | | ribosomal small subunit pseudouridine synthase A | 0.82 | Psyr_4057 | | regulatory protein, LysR:LysR, substrate-binding protein | low | > 86 |
| Pseudomonas putida KT2440 | 0.70 | PP_1409 | | ribosomal small subunit pseudouridine synthase A | 0.82 | PP_0917 | | Chromosome initiation inhibitor | 0.15 | 35 |
| Pseudomonas sp. S08-1 | 0.67 | OH686_05950 | | SSU rRNA pseudouridine(516) synthase | 0.75 | OH686_07195 | | Transcriptional regulator ArgP, LysR family | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.62 | Psest_3049 | | pseudouridine synthase | 0.76 | Psest_1166 | | transcriptional regulator, ArgP family | low | > 67 |
| Shewanella loihica PV-4 | 0.49 | Shew_0916 | | pseudouridine synthase (RefSeq) | 0.37 | Shew_1844 | | chromosome replication initiation inhibitor protein (RefSeq) | low | > 60 |
| Marinobacter adhaerens HP15 | 0.47 | HP15_2675 | | pseudouridine synthase, Rsu | 0.58 | HP15_868 | | transcriptional regulator, LysR family | low | > 73 |
| Shewanella sp. ANA-3 | 0.46 | Shewana3_3175 | | pseudouridine synthase, Rsu (RefSeq) | 0.39 | Shewana3_1652 | | chromosome replication initiation inhibitor protein (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.45 | Sama_2785 | | pseudouridine synthase, Rsu (RefSeq) | 0.38 | Sama_2987 | | chromosome replication initiation inhibitor protein (RefSeq) | low | > 62 |
| Erwinia tracheiphila SCR3 | 0.42 | LU632_RS17595 | rsuA | 16S rRNA pseudouridine(516) synthase RsuA | 0.30 | LU632_RS05845 | | LysR family transcriptional regulator ArgP | low | > 74 |
| Rahnella sp. WP5 | 0.42 | EX31_RS19195 | | 16S rRNA pseudouridine(516) synthase RsuA | 0.31 | EX31_RS21460 | | LysR family transcriptional regulator ArgP | low | > 89 |
| Pantoea sp. MT58 | 0.42 | IAI47_06585 | | 16S rRNA pseudouridine(516) synthase RsuA | 0.30 | IAI47_03715 | | LysR family transcriptional regulator ArgP | low | > 76 |
| Dickeya dianthicola 67-19 | 0.41 | HGI48_RS09200 | | 16S rRNA pseudouridine(516) synthase RsuA | 0.30 | HGI48_RS18415 | | LysR family transcriptional regulator ArgP | low | > 71 |
| Dickeya dianthicola ME23 | 0.41 | DZA65_RS09500 | | 16S rRNA pseudouridine(516) synthase RsuA | 0.30 | DZA65_RS19550 | | LysR family transcriptional regulator ArgP | low | > 75 |
| Pectobacterium carotovorum WPP14 | 0.41 | HER17_RS12950 | | 16S rRNA pseudouridine(516) synthase RsuA | 0.31 | HER17_RS02715 | | LysR family transcriptional regulator ArgP | low | > 75 |
| Enterobacter sp. TBS_079 | 0.41 | MPMX20_03149 | | Ribosomal small subunit pseudouridine synthase A | 0.29 | MPMX20_03773 | | HTH-type transcriptional regulator ArgP | low | > 85 |
| Dickeya dadantii 3937 | 0.41 | DDA3937_RS09160 | | 16S rRNA pseudouridine(516) synthase RsuA | 0.30 | DDA3937_RS18490 | | LysR family transcriptional regulator ArgP | low | > 74 |
| Enterobacter asburiae PDN3 | 0.41 | EX28DRAFT_0378 | | pseudouridine synthase | 0.29 | EX28DRAFT_2967 | | transcriptional regulator, ArgP family | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.40 | GFF3753 | | Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) | 0.30 | GFF3015 | | Chromosome initiation inhibitor | low | > 78 |
| Serratia liquefaciens MT49 | 0.40 | IAI46_17345 | | 16S rRNA pseudouridine(516) synthase RsuA | 0.31 | IAI46_20910 | | LysR family transcriptional regulator ArgP | low | > 86 |
| Escherichia fergusonii Becca | 0.40 | EFB2_01673 | | Ribosomal small subunit pseudouridine synthase A | 0.29 | EFB2_00987 | | HTH-type transcriptional regulator ArgP | low | > 86 |
| Escherichia coli ECRC62 | 0.40 | BNILDI_13855 | rsuA | 16S rRNA pseudouridine(516) synthase RsuA | 0.29 | BNILDI_09890 | argP | DNA-binding transcriptional regulator ArgP | low | > 75 |
| Escherichia coli ECRC102 | 0.40 | NIAGMN_21125 | rsuA | 16S rRNA pseudouridine(516) synthase RsuA | 0.29 | NIAGMN_17215 | argP | DNA-binding transcriptional regulator ArgP | — | — |
| Escherichia coli BL21 | 0.40 | ECD_02113 | | 16S rRNA pseudouridine(516) synthase | 0.29 | ECD_02747 | | transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor | low | > 61 |
| Escherichia coli Nissle 1917 | 0.40 | ECOLIN_RS12760 | | 16S rRNA pseudouridine(516) synthase RsuA | 0.29 | ECOLIN_RS16225 | | DNA-binding transcriptional regulator ArgP | — | — |
| Escherichia coli ECOR27 | 0.40 | NOLOHH_14935 | rsuA | 16S rRNA pseudouridine(516) synthase RsuA | 0.29 | NOLOHH_11355 | argP | DNA-binding transcriptional regulator ArgP | low | > 75 |
| Escherichia coli ECRC100 | 0.40 | OKFHMN_23360 | rsuA | 16S rRNA pseudouridine(516) synthase RsuA | 0.29 | OKFHMN_19450 | argP | DNA-binding transcriptional regulator ArgP | low | > 80 |
| Escherichia coli ECRC98 | 0.40 | JDDGAC_27320 | rsuA | 16S rRNA pseudouridine(516) synthase RsuA | 0.29 | JDDGAC_23090 | argP | DNA-binding transcriptional regulator ArgP | low | > 86 |
| Escherichia coli BW25113 | 0.40 | b2183 | rsuA | 16S rRNA pseudouridylate 516 synthase (NCBI) | 0.29 | b2916 | argP | chromosome replication initiation inhibitor protein (NCBI) | low | > 76 |
| Escherichia coli ECRC101 | 0.40 | MCAODC_14410 | rsuA | 16S rRNA pseudouridine(516) synthase RsuA | 0.29 | MCAODC_09970 | argP | DNA-binding transcriptional regulator ArgP | low | > 87 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.40 | OHPLBJKB_01526 | | Ribosomal small subunit pseudouridine synthase A | 0.29 | OHPLBJKB_00800 | | HTH-type transcriptional regulator ArgP | low | > 73 |
| Escherichia coli ECRC99 | 0.40 | KEDOAH_04825 | rsuA | 16S rRNA pseudouridine(516) synthase RsuA | 0.29 | KEDOAH_08690 | argP | DNA-binding transcriptional regulator ArgP | — | — |
| Escherichia coli ECOR38 | 0.40 | HEPCGN_22625 | rsuA | 16S rRNA pseudouridine(516) synthase RsuA | 0.29 | HEPCGN_18750 | argP | DNA-binding transcriptional regulator ArgP | low | > 87 |
| Klebsiella michiganensis M5al | 0.40 | BWI76_RS19810 | | 16S rRNA pseudouridine(516) synthase | 0.29 | BWI76_RS23930 | | transcriptional regulator ArgP | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.38 | CSW01_08220 | | 16S rRNA pseudouridine(516) synthase | 0.31 | CSW01_02560 | | chromosome initiation inhibitor | low | > 62 |
| Ralstonia solanacearum IBSBF1503 | 0.26 | RALBFv3_RS12605 | | 16S rRNA pseudouridine(516) synthase | 0.41 | RALBFv3_RS18360 | | transcriptional regulator ArgP | low | > 76 |
| Dyella japonica UNC79MFTsu3.2 | 0.26 | ABZR86_RS00325 | | 16S rRNA pseudouridine(516) synthase | 0.32 | ABZR86_RS10990 | | LysR family transcriptional regulator ArgP | low | > 74 |
| Ralstonia solanacearum UW163 | 0.26 | UW163_RS00960 | | 16S rRNA pseudouridine(516) synthase | 0.41 | UW163_RS20770 | | transcriptional regulator ArgP | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.26 | RR42_RS15880 | | pseudouridine synthase | 0.38 | RR42_RS31465 | | LysR family transcriptional regulator | low | > 128 |
| Ralstonia solanacearum PSI07 | 0.26 | RPSI07_RS20655 | | 16S rRNA pseudouridine(516) synthase | 0.40 | RPSI07_RS03900 | | transcriptional regulator ArgP | low | > 81 |
| Paraburkholderia graminis OAS925 | 0.25 | ABIE53_003276 | | 16S rRNA pseudouridine516 synthase | 0.38 | ABIE53_001719 | | LysR family transcriptional regulator (chromosome initiation inhibitor) | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.25 | H281DRAFT_04053 | | ribosomal small subunit pseudouridine synthase A (EC 5.4.99.-) | 0.39 | H281DRAFT_04882 | | transcriptional regulator, LysR family | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.24 | Xcc-8004.4611.1 | | Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) | 0.30 | Xcc-8004.1463.1 | | Transcriptional regulator lysR family | low | > 74 |
| Variovorax sp. SCN45 | 0.24 | GFF3076 | | SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19) | 0.28 | GFF2318 | | Transcriptional regulator ArgP, LysR family | low | > 127 |
| Rhodanobacter sp. FW510-T8 | 0.23 | OKGIIK_09050 | | Pseudouridine synthase | 0.34 | OKGIIK_01770 | | Transcriptional regulator ArgP | low | > 52 |
| Variovorax sp. OAS795 | 0.23 | ABID97_RS09900 | | 16S rRNA pseudouridine(516) synthase | 0.34 | ABID97_RS23875 | | LysR family transcriptional regulator ArgP | low | > 91 |
| Ralstonia sp. UNC404CL21Col | 0.22 | ABZR87_RS08605 | | pseudouridine synthase | 0.39 | ABZR87_RS14025 | | LysR family transcriptional regulator ArgP | low | > 80 |
| Burkholderia phytofirmans PsJN | 0.22 | BPHYT_RS15560 | | pseudouridine synthase | 0.37 | BPHYT_RS07440 | | LysR family transcriptional regulator | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.21 | QEN71_RS03150 | | 16S rRNA pseudouridine(516) synthase | 0.37 | QEN71_RS23610 | | LysR family transcriptional regulator ArgP | low | > 153 |
Not shown: 12 genomes with orthologs for Pf6N2E2_2785 only; 13 genomes with orthologs for Pf6N2E2_2849 only