| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens FW300-N1B4 | 1.0 | Pf1N1B4_3491 | | tRNA(Cytosine32)-2-thiocytidine synthetase | 1.0 | Pf1N1B4_367 | | Fumarate hydratase class II (EC 4.2.1.2) | 0.24 | 17 |
| Pseudomonas fluorescens FW300-N2E3 | 0.99 | AO353_02780 | | tRNA 2-thiocytidine biosynthesis protein TtcA | 0.93 | AO353_02150 | | fumarate hydratase | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.98 | PfGW456L13_2020 | | tRNA(Cytosine32)-2-thiocytidine synthetase | 0.92 | PfGW456L13_2160 | | Fumarate hydratase class II (EC 4.2.1.2) | low | > 87 |
| Pseudomonas simiae WCS417 | 0.97 | PS417_16415 | | tRNA 2-thiocytidine biosynthesis protein TtcA | 0.88 | PS417_19200 | | fumarate hydratase | low | > 88 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.97 | Psyr_3705 | | conserved hypothetical protein | 0.88 | Psyr_3661 | | Fumarate hydratase, class II | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.97 | Psyr_3705 | | conserved hypothetical protein | 0.88 | Psyr_3661 | | Fumarate hydratase, class II | low | > 86 |
| Pseudomonas fluorescens SBW25-INTG | 0.97 | PFLU_RS18455 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.86 | PFLU_RS21170 | | class II fumarate hydratase | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.97 | PFLU_RS18455 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.86 | PFLU_RS21170 | | class II fumarate hydratase | low | > 109 |
| Pseudomonas sp. RS175 | 0.96 | PFR28_03236 | | tRNA-cytidine(32) 2-sulfurtransferase | 0.91 | PFR28_00889 | | Fumarate hydratase class II | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.96 | Pf6N2E2_5711 | | tRNA(Cytosine32)-2-thiocytidine synthetase | 0.91 | Pf6N2E2_2536 | | Fumarate hydratase class II (EC 4.2.1.2) | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.96 | AO356_19000 | | tRNA 2-thiocytidine biosynthesis protein TtcA | 0.91 | AO356_03545 | | fumarate hydratase | — | — |
| Pseudomonas putida KT2440 | 0.92 | PP_1641 | | tRNA 2-thiocytidine biosynthesis protein TtcA | 0.85 | PP_1755 | | fumarate hydratase (class 2) | low | > 96 |
| Pseudomonas stutzeri RCH2 | 0.89 | Psest_3033 | | Predicted ATPase of the PP-loop superfamily implicated in cell cycle control | 0.81 | Psest_2682 | | fumarate hydratase, class II | low | > 67 |
| Pseudomonas sp. S08-1 | 0.88 | OH686_05145 | | tRNA-(cytosine32)-2-thiocytidine synthetase TtcA | 0.83 | OH686_21015 | | fumarate hydratase, class II | low | > 80 |
| Erwinia tracheiphila SCR3 | 0.71 | LU632_RS12165 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.59 | LU632_RS12335 | fumC | class II fumarate hydratase | low | > 74 |
| Escherichia coli BL21 | 0.70 | ECD_01321 | | tRNA s(2)C32 thioltransferase, iron sulfur cluster protein | 0.58 | ECD_01580 | | fumarate hydratase (fumarase C),aerobic Class II | — | — |
| Escherichia coli ECOR27 | 0.70 | NOLOHH_19870 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.58 | NOLOHH_18155 | fumC | class II fumarate hydratase | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.70 | OHPLBJKB_02337 | | tRNA-cytidine(32) 2-sulfurtransferase | 0.60 | OHPLBJKB_02115 | | Fumarate hydratase class II | low | > 73 |
| Escherichia coli ECRC99 | 0.70 | KEDOAH_26600 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.58 | KEDOAH_00455 | fumC | class II fumarate hydratase | — | — |
| Escherichia coli ECRC62 | 0.70 | BNILDI_18020 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.58 | BNILDI_16945 | fumC | class II fumarate hydratase | low | > 75 |
| Escherichia coli ECRC100 | 0.70 | OKFHMN_02155 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.58 | OKFHMN_27650 | fumC | class II fumarate hydratase | — | — |
| Escherichia coli ECOR38 | 0.70 | HEPCGN_26005 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.58 | HEPCGN_06025 | fumC | class II fumarate hydratase | low | > 87 |
| Escherichia coli ECRC102 | 0.70 | NIAGMN_26325 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.58 | NIAGMN_00425 | fumC | class II fumarate hydratase | — | — |
| Escherichia coli ECRC98 | 0.70 | JDDGAC_04715 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.58 | JDDGAC_02240 | fumC | class II fumarate hydratase | low | > 86 |
| Escherichia coli ECRC101 | 0.70 | MCAODC_16100 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.58 | MCAODC_17760 | fumC | class II fumarate hydratase | low | > 87 |
| Dickeya dianthicola ME23 | 0.70 | DZA65_RS12850 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.59 | DZA65_RS11125 | | class II fumarate hydratase | low | > 75 |
| Dickeya dadantii 3937 | 0.70 | DDA3937_RS12330 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.60 | DDA3937_RS10655 | | class II fumarate hydratase | low | > 74 |
| Escherichia coli Nissle 1917 | 0.70 | ECOLIN_RS08065 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.58 | ECOLIN_RS08995 | | class II fumarate hydratase | — | — |
| Escherichia coli BW25113 | 0.70 | b1344 | ydaO | predicted C32 tRNA thiolase (NCBI) | 0.58 | b1611 | fumC | fumarate hydratase (NCBI) | low | > 76 |
| Dickeya dianthicola 67-19 | 0.70 | HGI48_RS12410 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.59 | HGI48_RS10655 | | class II fumarate hydratase | 0.49 | 21 |
| Pantoea sp. MT58 | 0.70 | IAI47_09475 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.59 | IAI47_10335 | | class II fumarate hydratase | low | > 76 |
| Escherichia fergusonii Becca | 0.70 | EFB2_02583 | | tRNA-cytidine(32) 2-sulfurtransferase | 0.58 | EFB2_02381 | | Fumarate hydratase class II | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.69 | GFF2648 | | tRNA(Cytosine32)-2-thiocytidine synthetase | 0.60 | GFF1806 | | Fumarate hydratase class II (EC 4.2.1.2) | low | > 78 |
| Klebsiella michiganensis M5al | 0.69 | BWI76_RS12710 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.59 | BWI76_RS16270 | | fumarate hydratase, class II | low | > 92 |
| Pectobacterium carotovorum WPP14 | 0.69 | HER17_RS09605 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.58 | HER17_RS10755 | | class II fumarate hydratase | low | > 75 |
| Enterobacter sp. TBS_079 | 0.69 | MPMX20_02440 | | tRNA-cytidine(32) 2-sulfurtransferase | 0.59 | MPMX20_02022 | | Fumarate hydratase class II | low | > 85 |
| Enterobacter asburiae PDN3 | 0.69 | EX28DRAFT_1007 | | Predicted ATPase of the PP-loop superfamily implicated in cell cycle control | 0.59 | EX28DRAFT_1608 | | fumarase, class II (EC 4.2.1.2) | low | > 76 |
| Serratia liquefaciens MT49 | 0.69 | IAI46_13420 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.58 | IAI46_11655 | | class II fumarate hydratase | low | > 86 |
| Ralstonia solanacearum GMI1000 | 0.68 | RS_RS00865 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.61 | RS_RS23320 | | class II fumarate hydratase | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.68 | ABZR87_RS05700 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.60 | ABZR87_RS18630 | | class II fumarate hydratase | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.68 | RPSI07_RS23130 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.61 | RPSI07_RS05900 | | class II fumarate hydratase | low | > 81 |
| Ralstonia solanacearum IBSBF1503 | 0.68 | RALBFv3_RS10245 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.60 | RALBFv3_RS17680 | | class II fumarate hydratase | — | — |
| Ralstonia solanacearum UW163 | 0.68 | UW163_RS03335 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.60 | UW163_RS21470 | | class II fumarate hydratase | — | — |
| Rahnella sp. WP5 | 0.68 | EX31_RS06375 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.58 | EX31_RS06965 | | class II fumarate hydratase | low | > 89 |
| Cupriavidus basilensis FW507-4G11 | 0.67 | RR42_RS01445 | | tRNA 2-thiocytidine biosynthesis protein TtcA | 0.55 | RR42_RS33090 | | fumarate hydratase | low | > 128 |
| Acidovorax sp. GW101-3H11 | 0.66 | Ac3H11_1817 | | tRNA(Cytosine32)-2-thiocytidine synthetase | 0.58 | Ac3H11_943 | | Fumarate hydratase class II (EC 4.2.1.2) | low | > 79 |
| Acinetobacter radioresistens SK82 | 0.65 | MPMX26_00810 | | tRNA-cytidine(32) 2-sulfurtransferase | 0.56 | MPMX26_01446 | | Fumarate hydratase class II | low | > 36 |
| Variovorax sp. OAS795 | 0.65 | ABID97_RS06505 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.58 | ABID97_RS17545 | | class II fumarate hydratase | low | > 91 |
| Variovorax sp. SCN45 | 0.65 | GFF7310 | | tRNA-(cytosine32)-2-thiocytidine synthetase TtcA | 0.58 | GFF479 | | Fumarate hydratase class II (EC 4.2.1.2) | low | > 127 |
| Dechlorosoma suillum PS | 0.64 | Dsui_0695 | | putative ATPase of the PP-loop superfamily implicated in cell cycle control | 0.57 | Dsui_0926 | | fumarate hydratase, class II | low | > 51 |
| Herbaspirillum seropedicae SmR1 | 0.64 | HSERO_RS22035 | | tRNA 2-thiocytidine biosynthesis protein TtcA | 0.58 | HSERO_RS07610 | | fumarate hydratase | low | > 78 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.63 | GFF1658 | | tRNA(Cytosine32)-2-thiocytidine synthetase | 0.58 | GFF4101 | | Fumarate hydratase class II (EC 4.2.1.2) | low | > 90 |
| Castellaniella sp019104865 MT123 | 0.62 | ABCV34_RS10450 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.58 | ABCV34_RS03655 | | class II fumarate hydratase | low | > 48 |
| Rhizobium sp. OAE497 | 0.49 | ABIE40_RS10230 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.56 | ABIE40_RS10540 | | class II fumarate hydratase | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.48 | SMc00534 | | C32 tRNA thiolase | 0.56 | SMc00149 | | fumarate hydratase | — | — |
| Phaeobacter inhibens DSM 17395 | 0.47 | PGA1_c02110 | | tRNA 2-thiocytidine biosynthesis protein TtcA | 0.55 | PGA1_c13520 | | fumarate hydratase class II | — | — |
| Agrobacterium fabrum C58 | 0.47 | Atu1858 | | hypothetical protein | 0.54 | Atu1616 | | fumarate hydratase | — | — |
| Dinoroseobacter shibae DFL-12 | 0.46 | Dshi_0330 | | PP-loop domain protein (RefSeq) | 0.55 | Dshi_2334 | | fumarate hydratase, class II (RefSeq) | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.19 | DvMF_2293 | | PP-loop domain protein (RefSeq) | 0.47 | DvMF_2075 | | fumarate hydratase, class II (RefSeq) | low | > 51 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.18 | DVU3241 | | conserved hypothetical protein (TIGR) | 0.54 | DVU0080 | fumC | fumarate hydratase, class II (TIGR) | low | > 55 |
Not shown: 22 genomes with orthologs for Pf1N1B4_3491 only; 19 genomes with orthologs for Pf1N1B4_367 only