Conservation of cofitness between Pf1N1B4_3491 and Pf1N1B4_2203 in Pseudomonas fluorescens FW300-N1B4

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N1B4 1.0 Pf1N1B4_3491 tRNA(Cytosine32)-2-thiocytidine synthetase 1.0 Pf1N1B4_2203 probable P23 protein 0.24 16
Pseudomonas fluorescens FW300-N2E3 0.99 AO353_02780 tRNA 2-thiocytidine biosynthesis protein TtcA 0.97 AO353_08910 hypothetical protein low > 101
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_2020 tRNA(Cytosine32)-2-thiocytidine synthetase 0.97 PfGW456L13_869 probable P23 protein low > 87
Pseudomonas simiae WCS417 0.97 PS417_16415 tRNA 2-thiocytidine biosynthesis protein TtcA 0.87 PS417_27460 hypothetical protein low > 88
Pseudomonas fluorescens SBW25-INTG 0.97 PFLU_RS18455 tRNA 2-thiocytidine(32) synthetase TtcA 0.87 PFLU_RS29120 YaiI/YqxD family protein low > 109
Pseudomonas fluorescens SBW25 0.97 PFLU_RS18455 tRNA 2-thiocytidine(32) synthetase TtcA 0.87 PFLU_RS29120 YaiI/YqxD family protein low > 109
Pseudomonas fluorescens FW300-N2C3 0.96 AO356_19000 tRNA 2-thiocytidine biosynthesis protein TtcA 0.91 AO356_12870 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N2E2 0.96 Pf6N2E2_5711 tRNA(Cytosine32)-2-thiocytidine synthetase 0.90 Pf6N2E2_4448 probable P23 protein low > 103
Pseudomonas putida KT2440 0.92 PP_1641 tRNA 2-thiocytidine biosynthesis protein TtcA 0.84 PP_5221 conserved protein of unknown function, UPF0178 family low > 96
Pseudomonas stutzeri RCH2 0.89 Psest_3033 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 0.84 Psest_3736 Uncharacterized protein conserved in bacteria low > 67
Pseudomonas sp. S08-1 0.88 OH686_05145 tRNA-(cytosine32)-2-thiocytidine synthetase TtcA 0.81 OH686_13970 Protein YaiI low > 80
Shewanella amazonensis SB2B 0.72 Sama_1801 hypothetical protein (RefSeq) 0.46 Sama_3557 hypothetical protein (RefSeq) low > 62
Shewanella oneidensis MR-1 0.72 SO2354 conserved hypothetical protein (NCBI ptt file) 0.40 SO2894 YaiI/YqxD family protein (NCBI ptt file) low > 76
Kangiella aquimarina DSM 16071 0.71 B158DRAFT_2154 tRNA s(2)C-32 sulfurtransferase (EC 2.8.1.4) 0.41 B158DRAFT_2279 Uncharacterized protein conserved in bacteria low > 40
Erwinia tracheiphila SCR3 0.71 LU632_RS12165 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.41 LU632_RS18985 YaiI/YqxD family protein low > 74
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_07180 tRNA 2-thiocytidine(32) synthetase TtcA 0.38 CSW01_04525 DUF188 domain-containing protein low > 62
Escherichia coli ECOR27 0.70 NOLOHH_19870 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.38 NOLOHH_01530 yaiI YaiI/YqxD family protein low > 75
Escherichia coli ECRC98 0.70 JDDGAC_04715 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.38 JDDGAC_12260 yaiI YaiI/YqxD family protein low > 86
Escherichia coli ECRC99 0.70 KEDOAH_26600 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.38 KEDOAH_19360 yaiI YaiI/YqxD family protein — —
Escherichia coli ECRC101 0.70 MCAODC_16100 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.38 MCAODC_27830 yaiI YaiI/YqxD family protein low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.70 OHPLBJKB_02337 tRNA-cytidine(32) 2-sulfurtransferase 0.38 OHPLBJKB_03287 hypothetical protein low > 73
Escherichia coli ECRC100 0.70 OKFHMN_02155 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.38 OKFHMN_08605 yaiI YaiI/YqxD family protein — —
Escherichia coli BL21 0.70 ECD_01321 tRNA s(2)C32 thioltransferase, iron sulfur cluster protein 0.38 ECD_00334 UPF0178 family protein low > 61
Escherichia coli ECRC62 0.70 BNILDI_18020 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.38 BNILDI_22945 yaiI YaiI/YqxD family protein low > 75
Escherichia coli ECOR38 0.70 HEPCGN_26005 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.37 HEPCGN_07245 yaiI YaiI/YqxD family protein low > 87
Escherichia coli ECRC102 0.70 NIAGMN_26325 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.38 NIAGMN_06660 yaiI YaiI/YqxD family protein — —
Alteromonas macleodii MIT1002 0.70 MIT1002_02139 tRNA 2-thiocytidine biosynthesis protein TtcA 0.45 MIT1002_02273 hypothetical protein low > 70
Dyella japonica UNC79MFTsu3.2 0.70 ABZR86_RS16485 tRNA 2-thiocytidine(32) synthetase TtcA 0.41 ABZR86_RS00425 YaiI/YqxD family protein low > 74
Escherichia coli Nissle 1917 0.70 ECOLIN_RS08065 tRNA 2-thiocytidine(32) synthetase TtcA 0.38 ECOLIN_RS02350 YaiI/YqxD family protein — —
Escherichia coli BW25113 0.70 b1344 ydaO predicted C32 tRNA thiolase (NCBI) 0.38 b0387 yaiI orf, hypothetical protein (VIMSS) low > 76
Dickeya dianthicola 67-19 0.70 HGI48_RS12410 tRNA 2-thiocytidine(32) synthetase TtcA 0.37 HGI48_RS04350 YaiI/YqxD family protein low > 71
Dickeya dadantii 3937 0.70 DDA3937_RS12330 tRNA 2-thiocytidine(32) synthetase TtcA 0.37 DDA3937_RS04360 YaiI/YqxD family protein low > 74
Dickeya dianthicola ME23 0.70 DZA65_RS12850 tRNA 2-thiocytidine(32) synthetase TtcA 0.37 DZA65_RS04270 YaiI/YqxD family protein low > 75
Marinobacter adhaerens HP15 0.70 HP15_2116 PP-loop domain protein 0.40 HP15_841 YaiI/YqxD-like protein low > 73
Pantoea sp. MT58 0.70 IAI47_09475 tRNA 2-thiocytidine(32) synthetase TtcA 0.40 IAI47_14940 YaiI/YqxD family protein low > 76
Escherichia fergusonii Becca 0.70 EFB2_02583 tRNA-cytidine(32) 2-sulfurtransferase 0.29 EFB2_03669 hypothetical protein low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.69 GFF2648 tRNA(Cytosine32)-2-thiocytidine synthetase 0.37 GFF4285 Protein YaiI low > 78
Klebsiella michiganensis M5al 0.69 BWI76_RS12710 tRNA 2-thiocytidine(32) synthetase TtcA 0.39 BWI76_RS06175 DUF188 domain-containing protein low > 92
Enterobacter sp. TBS_079 0.69 MPMX20_02440 tRNA-cytidine(32) 2-sulfurtransferase 0.39 MPMX20_00977 hypothetical protein low > 85
Enterobacter asburiae PDN3 0.69 EX28DRAFT_1007 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 0.37 EX28DRAFT_2584 Uncharacterized protein conserved in bacteria — —
Pectobacterium carotovorum WPP14 0.69 HER17_RS09605 tRNA 2-thiocytidine(32) synthetase TtcA 0.39 HER17_RS17270 YaiI/YqxD family protein low > 75
Serratia liquefaciens MT49 0.69 IAI46_13420 tRNA 2-thiocytidine(32) synthetase TtcA 0.39 IAI46_18550 YaiI/YqxD family protein low > 86
Shewanella loihica PV-4 0.69 Shew_1995 PP-loop domain-containing protein (RefSeq) 0.45 Shew_2726 hypothetical protein (RefSeq) low > 60
Ralstonia solanacearum PSI07 0.68 RPSI07_RS23130 tRNA 2-thiocytidine(32) synthetase TtcA 0.41 RPSI07_RS06560 YaiI/YqxD family protein low > 81
Lysobacter sp. OAE881 0.68 ABIE51_RS01305 tRNA 2-thiocytidine(32) synthetase TtcA 0.42 ABIE51_RS09850 YaiI/YqxD family protein low > 62
Rahnella sp. WP5 0.68 EX31_RS06375 tRNA 2-thiocytidine(32) synthetase TtcA 0.39 EX31_RS20265 YaiI/YqxD family protein low > 89
Acinetobacter radioresistens SK82 0.65 MPMX26_00810 tRNA-cytidine(32) 2-sulfurtransferase 0.35 MPMX26_02216 hypothetical protein low > 36
Dechlorosoma suillum PS 0.64 Dsui_0695 putative ATPase of the PP-loop superfamily implicated in cell cycle control 0.40 Dsui_0282 hypothetical protein low > 51
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS22035 tRNA 2-thiocytidine biosynthesis protein TtcA 0.43 HSERO_RS02105 hypothetical protein low > 78
Castellaniella sp019104865 MT123 0.62 ABCV34_RS10450 tRNA 2-thiocytidine(32) synthetase TtcA 0.45 ABCV34_RS01010 YaiI/YqxD family protein low > 48
Xanthomonas campestris pv. campestris strain 8004 0.62 Xcc-8004.5211.1 tRNA(Cytosine32)-2-thiocytidine synthetase 0.43 Xcc-8004.2266.1 FIG01211351: hypothetical protein low > 74
Rhizobium sp. OAE497 0.49 ABIE40_RS10230 tRNA 2-thiocytidine(32) synthetase TtcA 0.31 ABIE40_RS09875 YaiI/YqxD family protein low > 107
Sinorhizobium meliloti 1021 0.48 SMc00534 C32 tRNA thiolase 0.33 SMc01271 hypothetical protein — —
Phaeobacter inhibens DSM 17395 0.47 PGA1_c02110 tRNA 2-thiocytidine biosynthesis protein TtcA 0.26 PGA1_c31620 Uncharacterized protein conserved in bacteria low > 62
Agrobacterium fabrum C58 0.47 Atu1858 hypothetical protein 0.31 Atu1478 hypothetical protein low > 89
Dinoroseobacter shibae DFL-12 0.46 Dshi_0330 PP-loop domain protein (RefSeq) 0.28 Dshi_0110 protein of unknown function DUF188 (RefSeq) low > 64

Not shown: 26 genomes with orthologs for Pf1N1B4_3491 only; 14 genomes with orthologs for Pf1N1B4_2203 only