Conservation of cofitness between Pf1N1B4_2147 and Pf1N1B4_1906 in Pseudomonas fluorescens FW300-N1B4

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N1B4 1.0 Pf1N1B4_2147 Putrescine utilization regulator 1.0 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.28 12
Pseudomonas simiae WCS417 0.99 PS417_27690 XRE family transcriptional regulator 0.93 PS417_00125 shikimate dehydrogenase — —
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS29365 cupin domain-containing protein 0.89 PFLU_RS00120 shikimate dehydrogenase — —
Pseudomonas fluorescens SBW25 0.99 PFLU_RS29365 cupin domain-containing protein 0.89 PFLU_RS00120 shikimate dehydrogenase — —
Pseudomonas fluorescens FW300-N2C3 0.98 AO356_12635 XRE family transcriptional regulator 0.93 AO356_11315 shikimate dehydrogenase low > 104
Pseudomonas fluorescens FW300-N2E3 0.98 AO353_09140 XRE family transcriptional regulator 0.96 AO353_10670 shikimate dehydrogenase low > 101
Pseudomonas fluorescens FW300-N2E2 0.98 Pf6N2E2_4394 Putrescine utilization regulator 0.93 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_815 Putrescine utilization regulator 0.94 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 87
Pseudomonas sp. RS175 0.97 PFR28_04396 HTH-type transcriptional regulator PuuR 0.93 PFR28_04655 Shikimate dehydrogenase (NADP(+)) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.90 Psyr_0238 Helix-turn-helix motif protein 0.83 Psyr_0025 shikimate dehydrogenase low > 86
Pseudomonas syringae pv. syringae B728a 0.90 Psyr_0238 Helix-turn-helix motif protein 0.83 Psyr_0025 shikimate dehydrogenase low > 86
Pseudomonas putida KT2440 0.89 PP_5268 DNA-binding transcriptional repressor PuuR-putrescine 0.82 PP_0074 shikimate 5-dehydrogenase — —
Pseudomonas sp. S08-1 0.83 OH686_13700 Putrescine utilization regulator 0.78 OH686_12485 Shikimate 5-dehydrogenase I alpha low > 80
Pseudomonas stutzeri RCH2 0.83 Psest_3791 Predicted transcriptional regulators 0.72 Psest_0029 shikimate 5-dehydrogenase — —
Shewanella oneidensis MR-1 0.71 SO1265 transcriptional regulator, putative (NCBI ptt file) 0.50 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.70 Shew_0970 XRE family transcriptional regulator (RefSeq) 0.50 Shew_3727 shikimate 5-dehydrogenase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.70 Sama_2646 XRE family transcriptional regulator (RefSeq) 0.49 Sama_0052 shikimate dehydrogenase (RefSeq) low > 62
Shewanella sp. ANA-3 0.70 Shewana3_3100 XRE family transcriptional regulator (RefSeq) 0.52 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.63 39
Burkholderia phytofirmans PsJN 0.48 BPHYT_RS23170 XRE family transcriptional regulator 0.47 BPHYT_RS16975 shikimate 5-dehydrogenase low > 109
Sinorhizobium meliloti 1021 0.48 SMc04387 aldehyde dehydrogenase 0.21 SMc02791 shikimate 5-dehydrogenase — —
Azospirillum sp. SherDot2 0.48 MPMX19_04921 HTH-type transcriptional regulator PuuR 0.19 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) — —
Bosea sp. OAE506 0.47 ABIE41_RS05345 cupin domain-containing protein 0.19 ABIE41_RS04650 shikimate dehydrogenase — —
Agrobacterium fabrum C58 0.47 Atu3328 aldehyde dehydrogenase 0.22 Atu0003 shikimate 5-dehydrogenase — —
Pantoea sp. MT58 0.41 IAI47_07115 HTH-type transcriptional regulator PuuR 0.49 IAI47_02315 shikimate dehydrogenase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_02383 HTH-type transcriptional regulator PuuR 0.50 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) low > 73
Serratia liquefaciens MT49 0.37 IAI46_17165 HTH-type transcriptional regulator PuuR 0.48 IAI46_23240 shikimate dehydrogenase low > 86
Escherichia coli ECRC99 0.37 KEDOAH_26340 puuR HTH-type transcriptional regulator PuuR 0.51 KEDOAH_10585 aroE shikimate dehydrogenase — —
Escherichia coli BL21 0.37 ECD_01276 repressor for the divergent puu operons, putrescine inducible 0.50 ECD_03132 dehydroshikimate reductase, NAD(P)-binding low > 61
Enterobacter asburiae PDN3 0.37 EX28DRAFT_1500 Predicted transcriptional regulators 0.46 EX28DRAFT_0046 shikimate dehydrogenase low > 76
Escherichia coli ECRC62 0.37 BNILDI_18270 puuR HTH-type transcriptional regulator PuuR 0.51 BNILDI_02165 aroE shikimate dehydrogenase low > 75
Escherichia coli ECRC98 0.37 JDDGAC_04980 puuR HTH-type transcriptional regulator PuuR 0.51 JDDGAC_21185 aroE shikimate dehydrogenase low > 86
Escherichia coli ECRC101 0.37 MCAODC_15835 puuR HTH-type transcriptional regulator PuuR 0.51 MCAODC_08085 aroE shikimate dehydrogenase low > 87
Rahnella sp. WP5 0.37 EX31_RS17905 HTH-type transcriptional regulator PuuR 0.44 EX31_RS15950 shikimate dehydrogenase — —
Escherichia coli ECOR38 0.37 HEPCGN_25765 puuR HTH-type transcriptional regulator PuuR 0.49 HEPCGN_16385 aroE shikimate dehydrogenase low > 87
Escherichia coli ECRC100 0.37 OKFHMN_02435 puuR HTH-type transcriptional regulator PuuR 0.51 OKFHMN_17565 aroE shikimate dehydrogenase low > 80
Escherichia coli ECRC102 0.37 NIAGMN_26605 puuR HTH-type transcriptional regulator PuuR 0.51 NIAGMN_15325 aroE shikimate dehydrogenase — —
Escherichia coli ECOR27 0.37 NOLOHH_20120 puuR HTH-type transcriptional regulator PuuR 0.51 NOLOHH_09355 aroE shikimate dehydrogenase low > 75
Escherichia coli BW25113 0.37 b1299 puuR DNA-binding transcriptional repressor (NCBI) 0.50 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) low > 76
Klebsiella michiganensis M5al 0.37 BWI76_RS10700 XRE family transcriptional regulator 0.48 BWI76_RS25645 shikimate dehydrogenase low > 92
Cupriavidus basilensis FW507-4G11 0.22 RR42_RS00225 XRE family transcriptional regulator 0.46 RR42_RS17645 shikimate dehydrogenase 0.32 41
Acidovorax sp. GW101-3H11 0.21 Ac3H11_1308 Transcriptional regulator 0.41 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Desulfovibrio vulgaris Hildenborough JW710 0.19 DVU3066 DNA-binding protein (TIGR) 0.20 DVU0115 aroE shikimate 5-dehydrogenase (TIGR) — —
Bacteroides thetaiotaomicron VPI-5482 0.19 BT2783 transcriptional regulator (NCBI ptt file) 0.13 BT4215 shikimate dehydrogenase (EC 1.1.1.25) (from data) — —
Paraburkholderia bryophila 376MFSha3.1 0.19 H281DRAFT_03130 transcriptional regulator, XRE family with cupin sensor 0.47 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) — —
Ralstonia solanacearum PSI07 0.18 RPSI07_RS22920 helix-turn-helix domain-containing protein 0.49 RPSI07_RS11300 shikimate dehydrogenase low > 81
Paraburkholderia graminis OAS925 0.18 ABIE53_004168 transcriptional regulator with XRE-family HTH domain 0.47 ABIE53_003560 shikimate dehydrogenase — —
Phaeobacter inhibens DSM 17395 0.18 PGA1_c28440 putative transcriptional regulator 0.22 PGA1_c35150 shikimate dehydrogenase AroE — —
Desulfovibrio vulgaris Miyazaki F 0.17 DvMF_2356 transcriptional regulator, XRE family (RefSeq) 0.18 DvMF_1962 shikimate 5-dehydrogenase (RefSeq) — —
Variovorax sp. OAS795 0.16 ABID97_RS13245 XRE family transcriptional regulator 0.37 ABID97_RS06300 shikimate dehydrogenase — —
Castellaniella sp019104865 MT123 0.14 ABCV34_RS09100 XRE family transcriptional regulator 0.41 ABCV34_RS11620 shikimate dehydrogenase low > 48

Not shown: 7 genomes with orthologs for Pf1N1B4_2147 only; 39 genomes with orthologs for Pf1N1B4_1906 only