| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_1906 | | ribosomal large subunit pseudouridine synthase C | 1.0 | PP_5337 | | LysR family transcriptional regulator | 0.33 | 17 |
| Pseudomonas syringae pv. syringae B728a | 0.90 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | 0.90 | Psyr_5050 | | transcriptional regulator, LysR family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.90 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | 0.90 | Psyr_5050 | | transcriptional regulator, LysR family | low | > 86 |
| Pseudomonas sp. RS175 | 0.90 | PFR28_03018 | | Ribosomal large subunit pseudouridine synthase C | 0.90 | PFR28_04497 | | HTH-type transcriptional regulator YjiE | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.89 | Pf6N2E2_5944 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.89 | Pf6N2E2_4084 | | Transcriptional regulator | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.89 | AO356_20125 | | 23S rRNA pseudouridylate synthase | 0.90 | AO356_11085 | | LysR family transcriptional regulator | low | > 104 |
| Pseudomonas simiae WCS417 | 0.88 | PS417_21480 | | 23S rRNA pseudouridylate synthase | 0.91 | PS417_28125 | | LysR family transcriptional regulator | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.88 | Pf1N1B4_459 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.90 | Pf1N1B4_2026 | | Transcriptional regulator | — | — |
| Pseudomonas fluorescens SBW25 | 0.88 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.91 | PFLU_RS29810 | | LysR family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.88 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.91 | PFLU_RS29810 | | LysR family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.87 | AO353_01405 | | 23S rRNA pseudouridylate synthase | 0.90 | AO353_09945 | | LysR family transcriptional regulator | low | > 101 |
| Pseudomonas stutzeri RCH2 | 0.87 | Psest_1680 | | pseudouridine synthase, RluA family | 0.80 | Psest_4073 | | Transcriptional regulator | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.86 | PfGW456L13_2097 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.90 | PfGW456L13_743 | | Transcriptional regulator | low | > 87 |
| Pseudomonas sp. S08-1 | 0.86 | OH686_22095 | | LSU rRNA pseudouridine(955/2504/2580) synthase | 0.78 | OH686_13320 | | LysR-family transcriptional regulator | low | > 80 |
| Pectobacterium carotovorum WPP14 | 0.56 | HER17_RS08615 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.29 | HER17_RS14225 | | hypochlorite stress DNA-binding transcriptional regulator HypT | low | > 75 |
| Rahnella sp. WP5 | 0.56 | EX31_RS24400 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.28 | EX31_RS05520 | | LysR family transcriptional regulator | low | > 89 |
| Escherichia fergusonii Becca | 0.56 | EFB2_02889 | | Ribosomal large subunit pseudouridine synthase C | 0.31 | EFB2_04117 | | HTH-type transcriptional regulator YjiE | low | > 86 |
| Escherichia coli BW25113 | 0.56 | b1086 | rluC | 23S rRNA pseudouridylate synthase (NCBI) | 0.31 | b4327 | yjiE | predicted DNA-binding transcriptional regulator (NCBI) | low | > 76 |
| Escherichia coli ECOR38 | 0.56 | HEPCGN_23865 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.31 | HEPCGN_09540 | hypT | hypochlorite stress DNA-binding transcriptional regulator HypT | low | > 85 |
| Escherichia coli ECRC62 | 0.56 | BNILDI_19305 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.31 | BNILDI_07735 | hypT | hypochlorite stress DNA-binding transcriptional regulator HypT | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.56 | OHPLBJKB_02580 | | Ribosomal large subunit pseudouridine synthase C | 0.31 | OHPLBJKB_03739 | | HTH-type transcriptional regulator YjiE | low | > 73 |
| Escherichia coli BL21 | 0.56 | ECD_01082 | | 23S rRNA pseudouridine(955,2504,2580) synthase | 0.31 | ECD_04196 | | hypochlorite-responsive transcription factor | low | > 60 |
| Escherichia coli ECOR27 | 0.56 | NOLOHH_21145 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.31 | NOLOHH_03860 | hypT | hypochlorite stress DNA-binding transcriptional regulator HypT | — | — |
| Escherichia coli Nissle 1917 | 0.55 | ECOLIN_RS06280 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.31 | ECOLIN_RS24870 | | hypochlorite stress DNA-binding transcriptional regulator HypT | low | > 52 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.55 | GFF3366 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.30 | GFF984 | | LysR family transcriptional regulator QseA | low | > 78 |
| Klebsiella michiganensis M5al | 0.55 | BWI76_RS11050 | | 23S rRNA pseudouridine(955/2504/2580) synthase | 0.28 | BWI76_RS17610 | | LysR family transcriptional regulator | low | > 92 |
| Dickeya dadantii 3937 | 0.54 | DDA3937_RS13155 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.30 | DDA3937_RS07390 | | hypochlorite stress DNA-binding transcriptional regulator HypT | low | > 74 |
| Dickeya dianthicola 67-19 | 0.53 | HGI48_RS13220 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.31 | HGI48_RS07255 | | hypochlorite stress DNA-binding transcriptional regulator HypT | low | > 71 |
| Dickeya dianthicola ME23 | 0.53 | DZA65_RS13690 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.31 | DZA65_RS07765 | | hypochlorite stress DNA-binding transcriptional regulator HypT | low | > 75 |
| Marinobacter adhaerens HP15 | 0.51 | HP15_2221 | | pseudouridine synthase, RluA family | 0.26 | HP15_205 | | protein containing bacterial regulatory protein, LysR domain | low | > 73 |
| Herbaspirillum seropedicae SmR1 | 0.46 | HSERO_RS09415 | | ribosomal large subunit pseudouridine synthase C | 0.35 | HSERO_RS19265 | | LysR family transcriptional regulator | low | > 78 |
| Paraburkholderia graminis OAS925 | 0.45 | ABIE53_003058 | | 23S rRNA pseudouridine955/2504/2580 synthase | 0.32 | ABIE53_003512 | | DNA-binding transcriptional LysR family regulator | low | > 113 |
| Paraburkholderia sabiae LMG 24235 | 0.44 | QEN71_RS04500 | | RluA family pseudouridine synthase | 0.33 | QEN71_RS33805 | | LysR substrate-binding domain-containing protein | low | > 153 |
| Cupriavidus basilensis FW507-4G11 | 0.44 | RR42_RS14155 | | pseudouridine synthase | 0.35 | RR42_RS29580 | | LysR family transcriptional regulator | low | > 128 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.44 | H281DRAFT_04340 | | 23S rRNA pseudouridine955/2504/2580 synthase | 0.32 | H281DRAFT_04272 | | transcriptional regulator, LysR family | — | — |
| Ralstonia solanacearum GMI1000 | 0.44 | RS_RS05155 | | RluA family pseudouridine synthase | 0.32 | RS_RS02375 | | LysR family transcriptional regulator | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.44 | ABZR87_RS10090 | | RluA family pseudouridine synthase | 0.33 | ABZR87_RS07510 | | LysR family transcriptional regulator | 0.47 | 70 |
| Ralstonia solanacearum PSI07 | 0.44 | RPSI07_RS19085 | | RluA family pseudouridine synthase | 0.33 | RPSI07_RS21665 | | LysR family transcriptional regulator | low | > 81 |
| Ralstonia solanacearum IBSBF1503 | 0.43 | RALBFv3_RS14375 | | RluA family pseudouridine synthase | 0.33 | RALBFv3_RS11545 | | LysR family transcriptional regulator | low | > 76 |
| Ralstonia solanacearum UW163 | 0.43 | UW163_RS11840 | | RluA family pseudouridine synthase | 0.33 | UW163_RS02040 | | LysR family transcriptional regulator | — | — |
| Burkholderia phytofirmans PsJN | 0.43 | BPHYT_RS14480 | | ribosomal large subunit pseudouridine synthase C | 0.32 | BPHYT_RS16710 | | LysR family transcriptional regulator | 0.43 | 94 |
| Variovorax sp. SCN45 | 0.43 | GFF3847 | | LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) | 0.33 | GFF4595 | | Transcriptional regulator | low | > 127 |
| Variovorax sp. OAS795 | 0.43 | ABID97_RS08250 | | RluA family pseudouridine synthase | 0.34 | ABID97_RS05925 | | LysR substrate-binding domain-containing protein | low | > 91 |
| Acidovorax sp. GW101-3H11 | 0.42 | Ac3H11_1590 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.34 | Ac3H11_1953 | | Transcriptional regulator | low | > 79 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.41 | GFF121 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.35 | GFF518 | | Transcriptional regulator | low | > 90 |
| Agrobacterium fabrum C58 | 0.30 | Atu1471 | | ribosomal large subunit pseudouridine synthase C | 0.30 | Atu2512 | | transcriptional regulator, LysR family | — | — |
| Sinorhizobium meliloti 1021 | 0.28 | SMc01275 | | ribosomal large subunit pseudouridine synthase C protein | 0.25 | SMa0097 | | LysR family transcriptional regulator | low | > 103 |
| Phaeobacter inhibens DSM 17395 | 0.25 | PGA1_c01950 | | ribosomal large subunit pseudouridine synthase C | 0.29 | PGA1_262p00990 | | transcriptional regulator, LysR family | — | — |
| Azospirillum sp. SherDot2 | 0.25 | MPMX19_01718 | | Ribosomal large subunit pseudouridine synthase C | 0.22 | MPMX19_05675 | | HTH-type transcriptional regulator YjiE | low | > 112 |
| Sphingomonas koreensis DSMZ 15582 | 0.24 | Ga0059261_1033 | | pseudouridine synthase, RluA family | 0.27 | Ga0059261_2946 | | Transcriptional regulator | — | — |
| Dinoroseobacter shibae DFL-12 | 0.23 | Dshi_0315 | | pseudouridine synthase, RluA family (RefSeq) | 0.24 | Dshi_1440 | | transcriptional regulator, LysR family (RefSeq) | low | > 64 |
| Azospirillum brasilense Sp245 | 0.22 | AZOBR_RS06905 | | pseudouridine synthase | 0.23 | AZOBR_RS17550 | | LysR family transcriptional regulator | low | > 97 |
Not shown: 33 genomes with orthologs for PP_1906 only; 1 genomes with orthologs for PP_5337 only