Conservation of cofitness between PP_4897 and PP_5200 in Pseudomonas putida KT2440

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4897 N-acetylmuramoyl-L-alanine amidase 1.0 PP_5200 proline aminopeptidase P II 0.27 7
Pseudomonas sp. RS175 0.81 PFR28_05118 N-acetylmuramoyl-L-alanine amidase AmiC 0.88 PFR28_04321 Xaa-Pro aminopeptidase 0.26 73
Pseudomonas fluorescens FW300-N2C3 0.80 AO356_08670 N-acetylmuramoyl-L-alanine amidase 0.88 AO356_13010 Xaa-Pro aminopeptidase low > 104
Pseudomonas syringae pv. syringae B728a ΔmexB 0.80 Psyr_0569 N-acetylmuramoyl-L-alanine amidase 0.90 Psyr_0321 aminopeptidase P, Metallo peptidase, MEROPS family M24B low > 86
Pseudomonas syringae pv. syringae B728a 0.80 Psyr_0569 N-acetylmuramoyl-L-alanine amidase 0.90 Psyr_0321 aminopeptidase P, Metallo peptidase, MEROPS family M24B low > 86
Pseudomonas fluorescens GW456-L13 0.79 PfGW456L13_157 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.89 PfGW456L13_896 Xaa-Pro aminopeptidase (EC 3.4.11.9) low > 87
Pseudomonas fluorescens SBW25-INTG 0.79 PFLU_RS02555 AMIN domain-containing protein 0.88 PFLU_RS28945 Xaa-Pro aminopeptidase low > 109
Pseudomonas fluorescens SBW25 0.79 PFLU_RS02555 AMIN domain-containing protein 0.88 PFLU_RS28945 Xaa-Pro aminopeptidase low > 109
Pseudomonas fluorescens FW300-N1B4 0.78 Pf1N1B4_1415 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.90 Pf1N1B4_2229 Xaa-Pro aminopeptidase (EC 3.4.11.9) — —
Pseudomonas fluorescens FW300-N2E2 0.78 Pf6N2E2_3617 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.88 Pf6N2E2_4480 Xaa-Pro aminopeptidase (EC 3.4.11.9) 0.38 67
Pseudomonas simiae WCS417 0.78 PS417_02475 N-acetylmuramoyl-L-alanine amidase 0.89 PS417_27285 Xaa-Pro aminopeptidase low > 88
Pseudomonas fluorescens FW300-N2E3 0.77 AO353_13130 N-acetylmuramoyl-L-alanine amidase 0.90 AO353_08760 Xaa-Pro aminopeptidase low > 101
Pseudomonas stutzeri RCH2 0.70 Psest_0680 N-acetylmuramoyl-L-alanine amidase 0.86 Psest_0175 Xaa-Pro aminopeptidase — —
Pseudomonas sp. S08-1 0.69 OH686_09485 N-acetylmuramoyl-L-alanine amidase 0.87 OH686_11205 Xaa-Pro aminopeptidase low > 80
Marinobacter adhaerens HP15 0.48 HP15_2502 N-acetylmuramoyl-L-alanine amidase-like protein 0.67 HP15_3203 proline aminopeptidase P II low > 73
Shewanella loihica PV-4 0.37 Shew_0563 N-acetylmuramoyl-L-alanine amidase (RefSeq) 0.40 Shew_2358 peptidase M24 (RefSeq) — —
Shewanella amazonensis SB2B 0.37 Sama_3028 N-acetylmuramoyl-L-alanine amidase (RefSeq) 0.39 Sama_1534 xaa-pro aminopeptidase (RefSeq) — —
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_1949 N-acetylmuramoyl-L-alanine amidase 0.57 B158DRAFT_0533 Xaa-Pro aminopeptidase 0.88 10
Alteromonas macleodii MIT1002 0.36 MIT1002_03791 N-acetylmuramoyl-L-alanine amidase AmiB precursor 0.45 MIT1002_02984 Xaa-Pro aminopeptidase 0.77 59
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS04210 N-acetylmuramoyl-L-alanine amidase 0.48 HSERO_RS03510 proline aminopeptidase P II — —
Ralstonia solanacearum GMI1000 0.33 RS_RS12730 N-acetylmuramoyl-L-alanine amidase 0.46 RS_RS02535 Xaa-Pro aminopeptidase — —
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS05110 N-acetylmuramoyl-L-alanine amidase 0.45 RALBFv3_RS11710 Xaa-Pro aminopeptidase — —
Dechlorosoma suillum PS 0.33 Dsui_3500 N-acetylmuramoyl-L-alanine amidase 0.46 Dsui_1591 Xaa-Pro aminopeptidase — —
Ralstonia solanacearum UW163 0.33 UW163_RS08515 N-acetylmuramoyl-L-alanine amidase 0.45 UW163_RS01875 Xaa-Pro aminopeptidase — —
Ralstonia sp. UNC404CL21Col 0.32 ABZR87_RS00765 N-acetylmuramoyl-L-alanine amidase 0.46 ABZR87_RS07665 aminopeptidase P N-terminal domain-containing protein low > 80
Pectobacterium carotovorum WPP14 0.32 HER17_RS16500 N-acetylmuramoyl-L-alanine amidase AmiC 0.45 HER17_RS19115 Xaa-Pro aminopeptidase low > 75
Rhodanobacter sp. FW510-T8 0.31 OKGIIK_03915 N-acetylmuramoyl-L-alanine amidase 0.52 OKGIIK_12200 pepP Xaa-Pro aminopeptidase — —
Dickeya dianthicola ME23 0.31 DZA65_RS19695 N-acetylmuramoyl-L-alanine amidase AmiB 0.45 DZA65_RS02455 Xaa-Pro aminopeptidase low > 75
Dickeya dadantii 3937 0.31 DDA3937_RS04995 N-acetylmuramoyl-L-alanine amidase 0.46 DDA3937_RS02395 Xaa-Pro aminopeptidase low > 74
Dickeya dianthicola 67-19 0.31 HGI48_RS18560 N-acetylmuramoyl-L-alanine amidase AmiB 0.45 HGI48_RS02350 Xaa-Pro aminopeptidase low > 71
Rhodanobacter denitrificans MT42 0.31 LRK55_RS14860 N-acetylmuramoyl-L-alanine amidase 0.55 LRK55_RS11420 aminopeptidase P N-terminal domain-containing protein — —
Rhodanobacter denitrificans FW104-10B01 0.31 LRK54_RS15145 N-acetylmuramoyl-L-alanine amidase 0.55 LRK54_RS11695 aminopeptidase P N-terminal domain-containing protein — —
Serratia liquefaciens MT49 0.31 IAI46_20390 N-acetylmuramoyl-L-alanine amidase 0.45 IAI46_20875 Xaa-Pro aminopeptidase low > 86
Enterobacter sp. TBS_079 0.30 MPMX20_03680 N-acetylmuramoyl-L-alanine amidase AmiC 0.45 MPMX20_03767 Xaa-Pro aminopeptidase low > 85
Pantoea sp. MT58 0.30 IAI47_02575 N-acetylmuramoyl-L-alanine amidase AmiB 0.47 IAI47_03750 Xaa-Pro aminopeptidase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.30 GFF1298 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.44 GFF3009 Xaa-Pro aminopeptidase (EC 3.4.11.9) low > 78
Enterobacter asburiae PDN3 0.30 EX28DRAFT_2892 N-acetylmuramoyl-L-alanine amidase 0.45 EX28DRAFT_2960 Xaa-Pro aminopeptidase low > 76
Burkholderia phytofirmans PsJN 0.30 BPHYT_RS15970 N-acetylmuramoyl-L-alanine amidase 0.46 BPHYT_RS16575 Xaa-Pro aminopeptidase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.30 OHPLBJKB_00913 N-acetylmuramoyl-L-alanine amidase AmiC 0.44 OHPLBJKB_00807 Xaa-Pro aminopeptidase low > 73
Erwinia tracheiphila SCR3 0.30 LU632_RS06215 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.45 LU632_RS05880 pepP Xaa-Pro aminopeptidase low > 74
Escherichia coli BW25113 0.30 b2817 b2817 putative amidase (VIMSS) 0.44 b2908 pepP proline aminopeptidase P II (NCBI) low > 76
Escherichia coli ECRC98 0.30 JDDGAC_23730 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.44 JDDGAC_23145 pepP Xaa-Pro aminopeptidase — —
Escherichia fergusonii Becca 0.30 EFB2_01067 N-acetylmuramoyl-L-alanine amidase AmiC 0.45 EFB2_00994 Xaa-Pro aminopeptidase low > 86
Escherichia coli Nissle 1917 0.30 ECOLIN_RS15815 N-acetylmuramoyl-L-alanine amidase AmiC 0.45 ECOLIN_RS16190 Xaa-Pro aminopeptidase low > 52
Escherichia coli ECRC101 0.30 OKFHMN_20065 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.44 OKFHMN_19505 pepP Xaa-Pro aminopeptidase — —
Escherichia coli ECRC62 0.30 BNILDI_10430 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.44 BNILDI_09950 pepP Xaa-Pro aminopeptidase — —
Escherichia coli ECRC102 0.30 NIAGMN_17835 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.44 NIAGMN_17270 pepP Xaa-Pro aminopeptidase — —
Escherichia coli BL21 0.30 ECD_02665 N-acetylmuramoyl-L-alanine amidase 0.44 ECD_02740 proline aminopeptidase P II low > 60
Escherichia coli ECRC99 0.30 KEDOAH_08065 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.44 KEDOAH_08635 pepP Xaa-Pro aminopeptidase — —
Escherichia coli ECRC101 0.30 MCAODC_10590 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.44 MCAODC_10025 pepP Xaa-Pro aminopeptidase — —
Escherichia coli ECOR38 0.30 HEPCGN_19320 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.44 HEPCGN_18795 pepP Xaa-Pro aminopeptidase 0.86 17
Escherichia coli ECOR27 0.30 NOLOHH_11950 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.44 NOLOHH_11415 pepP Xaa-Pro aminopeptidase low > 57
Klebsiella michiganensis M5al 0.29 BWI76_RS23215 N-acetylmuramoyl-L-alanine amidase 0.46 BWI76_RS23895 Xaa-Pro aminopeptidase low > 92
Hydrogenophaga sp. GW460-11-11-14-LB1 0.29 GFF5476 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.42 GFF2485 Xaa-Pro aminopeptidase (EC 3.4.11.9) low > 90
Rahnella sp. WP5 0.28 EX31_RS08835 N-acetylmuramoyl-L-alanine amidase AmiB 0.45 EX31_RS21495 Xaa-Pro aminopeptidase low > 89
Xanthomonas campestris pv. campestris strain 8004 0.26 Xcc-8004.3058.1 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.52 Xcc-8004.1147.1 Xaa-Pro aminopeptidase (EC 3.4.11.9) low > 74
Synechococcus elongatus PCC 7942 0.11 Synpcc7942_2360 amiA N-acetylmuramoyl-L-alanine amidase 0.39 Synpcc7942_0075 pepP aminopeptidase P. Metallo peptidase. MEROPS family M24B low > 38

Not shown: 6 genomes with orthologs for PP_4897 only; 23 genomes with orthologs for PP_5200 only