Conservation of cofitness between PP_0846 and PP_4803 in Pseudomonas putida KT2440

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0846 DnaK-like molecular chaperone specific for IscU 1.0 PP_4803 D-alanyl-D-alanine carboxypeptidase 0.28 14
Pseudomonas simiae WCS417 0.88 PS417_23180 chaperone protein HscA 0.91 PS417_24705 D-alanyl-D-alanine carboxypeptidase — —
Pseudomonas fluorescens FW300-N1B4 0.88 Pf1N1B4_861 Chaperone protein HscA 0.88 Pf1N1B4_2696 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas fluorescens FW300-N2C3 0.88 AO356_06625 chaperone protein HscA 0.88 AO356_15330 D-alanyl-D-alanine carboxypeptidase — —
Pseudomonas fluorescens GW456-L13 0.88 PfGW456L13_4869 Chaperone protein HscA 0.89 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas fluorescens FW300-N2E3 0.88 AO353_15855 chaperone protein HscA 0.88 AO353_06455 D-alanyl-D-alanine carboxypeptidase — —
Pseudomonas fluorescens SBW25-INTG 0.88 PFLU_RS24835 Fe-S protein assembly chaperone HscA 0.90 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase — —
Pseudomonas fluorescens SBW25 0.88 PFLU_RS24835 Fe-S protein assembly chaperone HscA 0.90 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase — —
Pseudomonas sp. RS175 0.88 PFR28_00290 Chaperone protein HscA 0.88 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC — —
Pseudomonas fluorescens FW300-N2E2 0.88 Pf6N2E2_3185 Chaperone protein HscA 0.88 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.87 Psyr_1241 Fe-S protein assembly chaperone HscA 0.89 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 — —
Pseudomonas syringae pv. syringae B728a 0.87 Psyr_1241 Fe-S protein assembly chaperone HscA 0.89 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 — —
Pseudomonas sp. S08-1 0.82 OH686_17495 Fe-S protein assembly chaperone HscA 0.77 OH686_09300 D-alanyl-D-alanine carboxypeptidase — —
Pseudomonas stutzeri RCH2 0.79 Psest_1255 Fe-S protein assembly chaperone HscA 0.78 Psest_0516 D-alanyl-D-alanine carboxypeptidase — —
Serratia liquefaciens MT49 0.63 IAI46_19335 Fe-S protein assembly chaperone HscA 0.42 IAI46_05915 D-alanyl-D-alanine carboxypeptidase DacA low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.63 GFF2431 Chaperone protein HscA 0.41 GFF744 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 78
Dickeya dadantii 3937 0.62 DDA3937_RS15525 Fe-S protein assembly chaperone HscA 0.44 DDA3937_RS09420 serine hydrolase — —
Ralstonia solanacearum IBSBF1503 0.62 RALBFv3_RS14290 Fe-S protein assembly chaperone HscA 0.40 RALBFv3_RS10770 D-alanyl-D-alanine carboxypeptidase — —
Ralstonia solanacearum UW163 0.62 UW163_RS11755 Fe-S protein assembly chaperone HscA 0.40 UW163_RS02810 D-alanyl-D-alanine carboxypeptidase — —
Dickeya dianthicola 67-19 0.62 HGI48_RS15625 Fe-S protein assembly chaperone HscA 0.45 HGI48_RS09435 serine hydrolase — —
Ralstonia solanacearum PSI07 0.62 RPSI07_RS19175 Fe-S protein assembly chaperone HscA 0.40 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase — —
Vibrio cholerae E7946 ATCC 55056 0.62 CSW01_03905 chaperone protein HscA 0.45 CSW01_04845 D-alanyl-D-alanine carboxypeptidase — —
Ralstonia solanacearum GMI1000 0.62 RS_RS05070 molecular chaperone HscA 0.40 RS_RS01610 D-alanyl-D-alanine carboxypeptidase — —
Dickeya dianthicola ME23 0.61 DZA65_RS16700 Fe-S protein assembly chaperone HscA 0.44 DZA65_RS09745 D-alanyl-D-alanine carboxypeptidase — —
Escherichia coli Nissle 1917 0.61 ECOLIN_RS14345 Fe-S protein assembly chaperone HscA 0.43 ECOLIN_RS04460 serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC62 0.61 BNILDI_12110 hscA Fe-S protein assembly chaperone HscA 0.43 BNILDI_20670 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC101 0.61 OKFHMN_21640 hscA Fe-S protein assembly chaperone HscA 0.43 OKFHMN_06040 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC99 0.61 KEDOAH_06580 hscA Fe-S protein assembly chaperone HscA 0.43 KEDOAH_21870 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC102 0.61 NIAGMN_19410 hscA Fe-S protein assembly chaperone HscA 0.43 NIAGMN_04085 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECOR27 0.61 NOLOHH_13310 hscA Fe-S protein assembly chaperone HscA 0.43 NOLOHH_22410 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC98 0.61 JDDGAC_25315 hscA Fe-S protein assembly chaperone HscA 0.43 JDDGAC_09675 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC101 0.61 MCAODC_12170 hscA Fe-S protein assembly chaperone HscA 0.43 MCAODC_25255 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.61 OHPLBJKB_01183 Chaperone protein HscA 0.43 OHPLBJKB_02871 D-alanyl-D-alanine carboxypeptidase DacC — —
Escherichia coli BW25113 0.61 b2526 hscA chaperone protein HscA (NCBI) 0.43 b0839 dacC D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) — —
Ralstonia sp. UNC404CL21Col 0.61 ABZR87_RS10005 Fe-S protein assembly chaperone HscA 0.39 ABZR87_RS06610 D-alanyl-D-alanine carboxypeptidase family protein — —
Escherichia coli BL21 0.61 ECD_02418 DnaK-like molecular chaperone specific for IscU 0.43 ECD_00806 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a — —
Escherichia coli ECOR38 0.61 HEPCGN_20780 hscA Fe-S protein assembly chaperone HscA 0.43 HEPCGN_01990 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia fergusonii Becca 0.61 EFB2_01364 Chaperone protein HscA 0.43 EFB2_03267 D-alanyl-D-alanine carboxypeptidase DacC low > 86
Klebsiella michiganensis M5al 0.61 BWI76_RS21140 molecular chaperone HscA 0.44 BWI76_RS09145 serine-type D-Ala-D-Ala carboxypeptidase low > 92
Pectobacterium carotovorum WPP14 0.60 HER17_RS06035 Fe-S protein assembly chaperone HscA 0.44 HER17_RS12545 serine hydrolase low > 75
Enterobacter sp. TBS_079 0.60 MPMX20_03407 Chaperone protein HscA 0.43 MPMX20_01477 D-alanyl-D-alanine carboxypeptidase DacC low > 85
Enterobacter asburiae PDN3 0.60 EX28DRAFT_0114 Fe-S protein assembly chaperone HscA 0.43 EX28DRAFT_2127 D-alanyl-D-alanine carboxypeptidase — —
Burkholderia phytofirmans PsJN 0.60 BPHYT_RS12760 molecular chaperone HscA 0.39 BPHYT_RS02415 cytochrome C550 — —
Paraburkholderia sabiae LMG 24235 0.59 QEN71_RS05805 Fe-S protein assembly chaperone HscA 0.38 QEN71_RS01300 D-alanyl-D-alanine carboxypeptidase family protein — —
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS06050 molecular chaperone HscA 0.41 RR42_RS01680 cytochrome C550 — —
Shewanella sp. ANA-3 0.59 Shewana3_2276 hscA chaperone protein HscA (RefSeq) 0.44 Shewana3_0991 penicillin-binding protein 6 (RefSeq) — —
Paraburkholderia bryophila 376MFSha3.1 0.59 H281DRAFT_00482 molecular chaperone HscA 0.39 H281DRAFT_02054 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 — —
Paraburkholderia graminis OAS925 0.59 ABIE53_002777 molecular chaperone HscA 0.38 ABIE53_000626 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) — —
Kangiella aquimarina DSM 16071 0.58 B158DRAFT_1463 Fe-S protein assembly chaperone HscA 0.49 B158DRAFT_0079 D-alanyl-D-alanine carboxypeptidase — —
Herbaspirillum seropedicae SmR1 0.58 HSERO_RS15745 molecular chaperone HscA 0.40 HSERO_RS21530 cytochrome C550 — —
Shewanella amazonensis SB2B 0.58 Sama_1297 hscA chaperone protein HscA (RefSeq) 0.43 Sama_2592 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Shewanella oneidensis MR-1 0.58 SO2268 hscA chaperone protein HscA (NCBI ptt file) 0.43 SO1164 dacA-1 D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) — —
Acidovorax sp. GW101-3H11 0.58 Ac3H11_4108 Chaperone protein HscA 0.34 Ac3H11_2142 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Dechlorosoma suillum PS 0.58 Dsui_2375 Fe-S protein assembly chaperone HscA 0.46 Dsui_0899 D-alanyl-D-alanine carboxypeptidase — —
Shewanella loihica PV-4 0.57 Shew_2313 hscA chaperone protein HscA (RefSeq) 0.45 Shew_2939 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Variovorax sp. SCN45 0.57 GFF951 Chaperone protein HscA 0.43 GFF1728 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Variovorax sp. OAS795 0.56 ABID97_RS14025 Fe-S protein assembly chaperone HscA 0.37 ABID97_RS00695 D-alanyl-D-alanine carboxypeptidase family protein — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.56 GFF4956 Chaperone protein HscA 0.36 GFF1806 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Acinetobacter radioresistens SK82 0.51 MPMX26_01323 Chaperone protein HscA 0.45 MPMX26_01051 D-alanyl-D-alanine carboxypeptidase DacA — —
Magnetospirillum magneticum AMB-1 0.47 AMB_RS15235 Fe-S protein assembly chaperone HscA 0.31 AMB_RS12315 D-alanyl-D-alanine carboxypeptidase — —

Not shown: 3 genomes with orthologs for PP_0846 only; 23 genomes with orthologs for PP_4803 only