| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_4130 | | NADH:ubiquinone oxidoreductase, membrane subunit M | 1.0 | PP_4546 | | ATP-dependent helicase HrpA | 0.40 | 9 |
| Pseudomonas fluorescens FW300-N2C3 | 0.87 | AO356_22015 | | NADH:ubiquinone oxidoreductase subunit M | 0.85 | AO356_04280 | | ATP-dependent RNA helicase HrpA | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.87 | Pf6N2E2_266 | | NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) | 0.85 | Pf6N2E2_2694 | | ATP-dependent RNA helicase HrpA (EC 3.6.4.13) | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.86 | PfGW456L13_2622 | | NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) | 0.85 | PfGW456L13_4467 | | ATP-dependent RNA helicase HrpA (EC 3.6.4.13) | — | — |
| Pseudomonas sp. RS175 | 0.86 | PFR28_02638 | | NADH-quinone oxidoreductase subunit M | 0.85 | PFR28_00739 | | hypothetical protein | — | — |
| Pseudomonas simiae WCS417 | 0.86 | PS417_16630 | | NADH:ubiquinone oxidoreductase subunit M | 0.85 | PS417_20575 | | ATP-dependent helicase HrpA | — | — |
| Pseudomonas fluorescens SBW25 | 0.86 | PFLU_RS18670 | | NADH-quinone oxidoreductase subunit M | 0.85 | PFLU_RS22265 | | ATP-dependent RNA helicase HrpA | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.86 | PFLU_RS18670 | | NADH-quinone oxidoreductase subunit M | 0.85 | PFLU_RS22265 | | ATP-dependent RNA helicase HrpA | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.85 | AO353_27795 | | NADH:ubiquinone oxidoreductase subunit M | 0.85 | AO353_18225 | | ATP-dependent RNA helicase HrpA | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.84 | Pf1N1B4_4029 | | NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) | 0.85 | Pf1N1B4_3388 | | ATP-dependent RNA helicase HrpA (EC 3.6.4.13) | low | > 87 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.83 | Psyr_3208 | | NADH dehydrogenase subunit M | 0.85 | Psyr_3831 | | ATP-dependent helicase HrpA | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.83 | Psyr_3208 | | NADH dehydrogenase subunit M | 0.85 | Psyr_3831 | | ATP-dependent helicase HrpA | low | > 86 |
| Pseudomonas sp. S08-1 | 0.81 | OH686_00100 | | NADH-ubiquinone oxidoreductase chain M | 0.80 | OH686_05730 | | RNA helicase HrpA | low | > 80 |
| Serratia liquefaciens MT49 | 0.73 | IAI46_17655 | | NADH-quinone oxidoreductase subunit M | 0.48 | IAI46_13330 | | ATP-dependent RNA helicase HrpA | low | > 86 |
| Rahnella sp. WP5 | 0.73 | EX31_RS19380 | | NADH-quinone oxidoreductase subunit M | 0.46 | EX31_RS06495 | | ATP-dependent RNA helicase HrpA | low | > 89 |
| Escherichia coli BL21 | 0.73 | ECD_02202 | | NADH:ubiquinone oxidoreductase, membrane subunit M | 0.47 | ECD_01368 | | putative ATP-dependent helicase | low | > 60 |
| Escherichia coli ECRC101 | 0.73 | OKFHMN_22895 | nuoM | NADH-quinone oxidoreductase subunit M | 0.47 | OKFHMN_01730 | hrpA | ATP-dependent RNA helicase HrpA | — | — |
| Escherichia coli ECRC102 | 0.73 | NIAGMN_20665 | nuoM | NADH-quinone oxidoreductase subunit M | 0.47 | NIAGMN_25865 | hrpA | ATP-dependent RNA helicase HrpA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.73 | OHPLBJKB_01429 | | NADH-quinone oxidoreductase subunit M | 0.47 | OHPLBJKB_02301 | | hypothetical protein | low | > 73 |
| Escherichia coli ECOR27 | 0.73 | NOLOHH_14515 | nuoM | NADH-quinone oxidoreductase subunit M | 0.47 | NOLOHH_19390 | hrpA | ATP-dependent RNA helicase HrpA | — | — |
| Escherichia coli ECRC98 | 0.73 | JDDGAC_26860 | nuoM | NADH-quinone oxidoreductase subunit M | 0.47 | JDDGAC_04220 | hrpA | ATP-dependent RNA helicase HrpA | — | — |
| Escherichia coli ECRC101 | 0.73 | MCAODC_13935 | nuoM | NADH-quinone oxidoreductase subunit M | 0.47 | MCAODC_16205 | hrpA | ATP-dependent RNA helicase HrpA | — | — |
| Escherichia coli BW25113 | 0.73 | b2277 | nuoM | NADH dehydrogenase subunit M (NCBI) | 0.47 | b1413 | hrpA | ATP-dependent helicase (RefSeq) | low | > 76 |
| Escherichia coli ECOR38 | 0.73 | HEPCGN_22100 | nuoM | NADH-quinone oxidoreductase subunit M | 0.47 | HEPCGN_26110 | hrpA | ATP-dependent RNA helicase HrpA | low | > 85 |
| Escherichia coli ECRC62 | 0.73 | BNILDI_13435 | nuoM | NADH-quinone oxidoreductase subunit M | 0.47 | BNILDI_17845 | hrpA | ATP-dependent RNA helicase HrpA | — | — |
| Escherichia coli ECRC99 | 0.73 | KEDOAH_05300 | nuoM | NADH-quinone oxidoreductase subunit M | 0.47 | KEDOAH_26710 | hrpA | ATP-dependent RNA helicase HrpA | — | — |
| Escherichia fergusonii Becca | 0.73 | EFB2_01582 | | NADH-quinone oxidoreductase subunit M | 0.47 | EFB2_02565 | | hypothetical protein | low | > 86 |
| Escherichia coli Nissle 1917 | 0.73 | ECOLIN_RS13230 | | NADH-quinone oxidoreductase subunit M | 0.47 | ECOLIN_RS08180 | | ATP-dependent RNA helicase HrpA | — | — |
| Erwinia tracheiphila SCR3 | 0.73 | LU632_RS08020 | nuoM | NADH-quinone oxidoreductase subunit M | 0.45 | LU632_RS12630 | hrpA | ATP-dependent RNA helicase HrpA | low | > 74 |
| Pantoea sp. MT58 | 0.73 | IAI47_06415 | | NADH-quinone oxidoreductase subunit M | 0.46 | IAI47_09520 | | ATP-dependent RNA helicase HrpA | low | > 76 |
| Klebsiella michiganensis M5al | 0.72 | BWI76_RS20135 | | NADH-quinone oxidoreductase subunit M | 0.46 | BWI76_RS13165 | | ATP-dependent RNA helicase HrpA | low | > 92 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.72 | GFF1880 | | NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) | 0.47 | GFF2632 | | ATP-dependent RNA helicase HrpA (EC 3.6.4.13) | low | > 78 |
| Enterobacter asburiae PDN3 | 0.72 | EX28DRAFT_0333 | | proton-translocating NADH-quinone oxidoreductase, chain M | 0.47 | EX28DRAFT_1357 | | RNA helicase HrpA | low | > 76 |
| Enterobacter sp. TBS_079 | 0.72 | MPMX20_03207 | | NADH-quinone oxidoreductase subunit M | 0.47 | MPMX20_02189 | | hypothetical protein | low | > 85 |
| Pectobacterium carotovorum WPP14 | 0.72 | HER17_RS07180 | | NADH-quinone oxidoreductase subunit M | 0.47 | HER17_RS09660 | | ATP-dependent RNA helicase HrpA | low | > 75 |
| Dickeya dianthicola 67-19 | 0.72 | HGI48_RS14255 | | NADH-quinone oxidoreductase subunit M | 0.47 | HGI48_RS12360 | | ATP-dependent RNA helicase HrpA | low | > 71 |
| Dickeya dianthicola ME23 | 0.72 | DZA65_RS14930 | | NADH-quinone oxidoreductase subunit M | 0.47 | DZA65_RS12800 | | ATP-dependent RNA helicase HrpA | — | — |
| Dickeya dadantii 3937 | 0.71 | DDA3937_RS14280 | | NADH-quinone oxidoreductase subunit M | 0.48 | DDA3937_RS12270 | | ATP-dependent RNA helicase HrpA | — | — |
| Shewanella oneidensis MR-1 | 0.68 | SO1010 | nuoM | NADH dehydrogenase I, M subunit (NCBI ptt file) | 0.48 | SO2229 | hrpA | ATP-dependent helicase HrpA (NCBI ptt file) | low | > 76 |
| Acinetobacter radioresistens SK82 | 0.58 | MPMX26_02544 | | NADH-quinone oxidoreductase subunit M | 0.37 | MPMX26_02008 | | hypothetical protein | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.32 | QEN71_RS24090 | | NADH-quinone oxidoreductase subunit M | 0.37 | QEN71_RS05625 | | ATP-dependent RNA helicase HrpA | low | > 153 |
| Ralstonia solanacearum PSI07 | 0.32 | RPSI07_RS14395 | | NADH-quinone oxidoreductase subunit M | 0.41 | RPSI07_RS17865 | | ATP-dependent RNA helicase HrpA | — | — |
| Ralstonia solanacearum UW163 | 0.32 | UW163_RS10810 | | NADH-quinone oxidoreductase subunit M | 0.41 | UW163_RS12950 | | ATP-dependent RNA helicase HrpA | — | — |
| Ralstonia solanacearum GMI1000 | 0.32 | RS_RS10285 | | NADH-quinone oxidoreductase subunit M | 0.41 | RS_RS06270 | | ATP-dependent RNA helicase HrpA | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.32 | RALBFv3_RS02915 | | NADH-quinone oxidoreductase subunit M | 0.41 | RALBFv3_RS15490 | | ATP-dependent RNA helicase HrpA | — | — |
| Paraburkholderia graminis OAS925 | 0.32 | ABIE53_001602 | | NADH-quinone oxidoreductase subunit M | 0.40 | ABIE53_002813 | | ATP-dependent helicase HrpA | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.31 | RR42_RS05570 | | NADH:ubiquinone oxidoreductase subunit M | 0.42 | RR42_RS13030 | | ATP-dependent helicase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.31 | GFF3693 | | NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) | 0.38 | GFF4301 | | macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. | — | — |
| Ralstonia sp. UNC404CL21Col | 0.31 | ABZR87_RS14820 | | NADH-quinone oxidoreductase subunit M | 0.41 | ABZR87_RS11020 | | ATP-dependent RNA helicase HrpA | — | — |
| Acidovorax sp. GW101-3H11 | 0.30 | Ac3H11_1440 | | NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) | 0.38 | Ac3H11_896 | | macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. | — | — |
| Castellaniella sp019104865 MT123 | 0.30 | ABCV34_RS08690 | | NADH-quinone oxidoreductase subunit M | 0.40 | ABCV34_RS02420 | | ATP-dependent RNA helicase HrpA | — | — |
| Dechlorosoma suillum PS | 0.30 | Dsui_3038 | | proton-translocating NADH-quinone oxidoreductase, chain M | 0.41 | Dsui_1373 | | ATP-dependent helicase HrpA | — | — |
| Variovorax sp. SCN45 | 0.30 | GFF4762 | | NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) | 0.38 | GFF247 | | ATP-dependent helicase HrpA | — | — |
| Variovorax sp. OAS795 | 0.30 | ABID97_RS20435 | | NADH-quinone oxidoreductase subunit M | 0.39 | ABID97_RS16615 | | ATP-dependent RNA helicase HrpA | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.30 | ABZR86_RS06055 | | NADH-quinone oxidoreductase subunit M | 0.39 | ABZR86_RS19720 | | ATP-dependent RNA helicase HrpA | — | — |
| Lysobacter sp. OAE881 | 0.29 | ABIE51_RS08370 | | NADH-quinone oxidoreductase subunit M | 0.37 | ABIE51_RS05155 | | ATP-dependent RNA helicase HrpA | — | — |
| Kangiella aquimarina DSM 16071 | 0.29 | B158DRAFT_0115 | | NADH dehydrogenase subunit M (EC 1.6.5.3) | 0.39 | B158DRAFT_1779 | | ATP-dependent helicase HrpA | low | > 40 |
| Rhodanobacter sp. FW510-T8 | 0.29 | OKGIIK_05825 | nuoM | NADH-quinone oxidoreductase subunit M | 0.35 | OKGIIK_02155 | hrpA | ATP-dependent RNA helicase HrpA | — | — |
| Herbaspirillum seropedicae SmR1 | 0.29 | HSERO_RS08880 | | NADH:ubiquinone oxidoreductase subunit M | 0.39 | HSERO_RS17315 | | ATP-dependent helicase | — | — |
| Rhodanobacter denitrificans MT42 | 0.29 | LRK55_RS00845 | | NADH-quinone oxidoreductase subunit M | 0.36 | LRK55_RS12420 | | ATP-dependent RNA helicase HrpA | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.29 | LRK54_RS01070 | | NADH-quinone oxidoreductase subunit M | 0.36 | LRK54_RS12715 | | ATP-dependent RNA helicase HrpA | — | — |
Not shown: 28 genomes with orthologs for PP_4130 only; 8 genomes with orthologs for PP_4546 only