Conservation of cofitness between PP_5171 and PP_4011 in Pseudomonas putida KT2440

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5171 sulfate ABC transporter 1.0 PP_4011 isocitrate dehydrogenase, NADP(+)-specific 0.13 11
Pseudomonas fluorescens SBW25 0.91 PFLU_RS00945 sulfate ABC transporter substrate-binding protein 0.93 PFLU_RS18565 NADP-dependent isocitrate dehydrogenase low > 109
Pseudomonas simiae WCS417 0.91 PS417_00930 ABC transporter permease 0.93 PS417_16525 isocitrate dehydrogenase low > 88
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS00945 sulfate ABC transporter substrate-binding protein 0.93 PFLU_RS18565 NADP-dependent isocitrate dehydrogenase low > 109
Pseudomonas fluorescens FW300-N2E2 0.88 Pf6N2E2_4006 Sulfate and thiosulfate binding protein CysP 0.93 Pf6N2E2_289 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) low > 103
Pseudomonas fluorescens FW300-N2C3 0.88 AO356_10685 ABC transporter permease 0.93 AO356_22135 isocitrate dehydrogenase low > 104
Pseudomonas sp. RS175 0.88 PFR28_04762 Sulfate-binding protein 0.93 PFR28_02616 Isocitrate dehydrogenase [NADP] low > 88
Pseudomonas fluorescens FW300-N2E3 0.86 AO353_11540 ABC transporter permease 0.92 AO353_27690 isocitrate dehydrogenase low > 101
Pseudomonas fluorescens GW456-L13 0.83 PfGW456L13_486 Sulfate and thiosulfate binding protein CysP 0.92 PfGW456L13_2643 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) low > 87
Pseudomonas fluorescens FW300-N1B4 0.83 Pf1N1B4_1727 Sulfate and thiosulfate binding protein CysP 0.92 Pf1N1B4_4052 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) low > 87
Pseudomonas stutzeri RCH2 0.72 Psest_4060 sulfate/thiosulfate-binding protein 0.91 Psest_2024 isocitrate dehydrogenase, NADP-dependent, prokaryotic type low > 67
Pseudomonas sp. S08-1 0.72 OH686_11670 Sulfate and thiosulfate binding protein CysP 0.93 OH686_00220 isocitrate dehydrogenase, NADP-dependent — —
Pectobacterium carotovorum WPP14 0.63 HER17_RS05670 sulfate ABC transporter substrate-binding protein 0.78 HER17_RS11610 NADP-dependent isocitrate dehydrogenase — —
Dickeya dadantii 3937 0.63 DDA3937_RS15850 sulfate ABC transporter substrate-binding protein 0.78 DDA3937_RS11470 NADP-dependent isocitrate dehydrogenase — —
Dickeya dianthicola 67-19 0.63 HGI48_RS15990 sulfate ABC transporter substrate-binding protein 0.78 HGI48_RS11515 NADP-dependent isocitrate dehydrogenase — —
Dickeya dianthicola ME23 0.63 DZA65_RS17075 sulfate ABC transporter substrate-binding protein 0.78 DZA65_RS11850 NADP-dependent isocitrate dehydrogenase — —
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS08185 sulfate transporter subunit 0.76 HSERO_RS07015 isocitrate dehydrogenase low > 78
Dechlorosoma suillum PS 0.60 Dsui_1525 sulfate/thiosulfate-binding protein 0.70 Dsui_3296 isocitrate dehydrogenase, NADP-dependent, prokaryotic type low > 51
Ralstonia solanacearum UW163 0.58 UW163_RS13365 sulfate ABC transporter substrate-binding protein 0.78 UW163_RS08770 isocitrate dehydrogenase (NADP(+)) — —
Ralstonia solanacearum IBSBF1503 0.58 RALBFv3_RS00035 sulfate ABC transporter substrate-binding protein 0.78 RALBFv3_RS04855 isocitrate dehydrogenase (NADP(+)) — —
Ralstonia solanacearum GMI1000 0.58 RS_RS06700 sulfate ABC transporter substrate-binding protein 0.78 RS_RS12485 NADP-dependent isocitrate dehydrogenase — —
Ralstonia sp. UNC404CL21Col 0.58 ABZR87_RS11490 sulfate ABC transporter substrate-binding protein 0.78 ABZR87_RS00460 NADP-dependent isocitrate dehydrogenase — —
Acinetobacter radioresistens SK82 0.58 MPMX26_02166 Sulfate-binding protein 0.80 MPMX26_01012 Isocitrate dehydrogenase [NADP] — —
Escherichia coli ECRC100 0.57 OKFHMN_13820 sbp sulfate/thiosulfate ABC transporter substrate-binding protein Sbp 0.79 OKFHMN_00760 icd NADP-dependent isocitrate dehydrogenase — —
Escherichia coli BW25113 0.57 b3917 sbp sulfate transporter subunit (NCBI) 0.79 b1136 icd isocitrate dehydrogenase (NCBI) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_04134 Sulfate-binding protein 0.79 OHPLBJKB_02532 Isocitrate dehydrogenase [NADP] — —
Escherichia coli ECRC101 0.57 MCAODC_04320 sbp sulfate/thiosulfate ABC transporter substrate-binding protein Sbp 0.79 MCAODC_22325 icd NADP-dependent isocitrate dehydrogenase — —
Escherichia coli ECRC102 0.57 NIAGMN_11575 sbp sulfate/thiosulfate ABC transporter substrate-binding protein Sbp 0.79 NIAGMN_24905 icd NADP-dependent isocitrate dehydrogenase — —
Escherichia fergusonii Becca 0.57 EFB2_04701 Sulfate-binding protein 0.79 EFB2_02839 Isocitrate dehydrogenase [NADP] — —
Escherichia coli BL21 0.57 ECD_03802 sulfate transporter subunit 0.79 ECD_01134 isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase — —
Escherichia coli ECRC62 0.57 BNILDI_05575 sbp sulfate/thiosulfate ABC transporter substrate-binding protein Sbp 0.79 BNILDI_19050 icd NADP-dependent isocitrate dehydrogenase — —
Escherichia coli ECRC98 0.57 JDDGAC_17445 sbp sulfate/thiosulfate ABC transporter substrate-binding protein Sbp 0.79 JDDGAC_06605 icd NADP-dependent isocitrate dehydrogenase low > 86
Escherichia coli ECOR27 0.57 NOLOHH_05955 sbp sulfate/thiosulfate ABC transporter substrate-binding protein Sbp 0.79 NOLOHH_20885 icd NADP-dependent isocitrate dehydrogenase — —
Escherichia coli ECRC99 0.57 KEDOAH_14340 sbp sulfate/thiosulfate ABC transporter substrate-binding protein Sbp 0.79 KEDOAH_24845 icd NADP-dependent isocitrate dehydrogenase — —
Escherichia coli Nissle 1917 0.57 ECOLIN_RS22565 sulfate/thiosulfate ABC transporter substrate-binding protein Sbp 0.79 ECOLIN_RS06640 NADP-dependent isocitrate dehydrogenase — —
Escherichia coli ECOR38 0.57 HEPCGN_12465 sbp sulfate/thiosulfate ABC transporter substrate-binding protein Sbp 0.79 HEPCGN_24245 icd NADP-dependent isocitrate dehydrogenase — —
Enterobacter asburiae PDN3 0.57 EX28DRAFT_4391 sulfate/thiosulfate-binding protein 0.78 EX28DRAFT_1794 isocitrate dehydrogenase (NADP) (EC 1.1.1.42) — —
Ralstonia solanacearum PSI07 0.57 RPSI07_RS17445 sulfate ABC transporter substrate-binding protein 0.79 RPSI07_RS12425 NADP-dependent isocitrate dehydrogenase — —
Variovorax sp. OAS795 0.57 ABID97_RS15465 sulfate ABC transporter substrate-binding protein 0.80 ABID97_RS16920 NADP-dependent isocitrate dehydrogenase low > 91
Enterobacter sp. TBS_079 0.57 MPMX20_04551 Sulfate-binding protein 0.78 MPMX20_01820 Isocitrate dehydrogenase [NADP] — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF2284 Sulfate-binding protein Sbp 0.79 GFF3422 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) — —
Variovorax sp. SCN45 0.56 GFF1247 Sulfate and thiosulfate binding protein CysP 0.79 GFF343 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) low > 127
Serratia liquefaciens MT49 0.56 IAI46_24640 sulfate ABC transporter substrate-binding protein 0.80 IAI46_10460 NADP-dependent isocitrate dehydrogenase — —
Klebsiella michiganensis M5al 0.56 BWI76_RS27500 sulfate transporter subunit 0.79 BWI76_RS11330 isocitrate dehydrogenase (NADP(+)) — —
Shewanella oneidensis MR-1 0.56 SO4652 sbp sulfate ABC transporter, periplasmic sulfate-binding protein (NCBI ptt file) 0.21 SO1538 isocitrate dehydrogenase, NAD-dependent (NCBI ptt file) — —
Pantoea sp. MT58 0.55 IAI47_00785 sulfate ABC transporter substrate-binding protein 0.79 IAI47_11900 NADP-dependent isocitrate dehydrogenase — —
Acidovorax sp. GW101-3H11 0.55 Ac3H11_581 Sulfate and thiosulfate binding protein CysP 0.77 Ac3H11_2377 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) low > 79
Paraburkholderia graminis OAS925 0.54 ABIE53_001990 sulfate/thiosulfate-binding protein 0.78 ABIE53_003317 isocitrate dehydrogenase low > 113
Rahnella sp. WP5 0.54 EX31_RS14305 sulfate ABC transporter substrate-binding protein 0.79 EX31_RS24590 NADP-dependent isocitrate dehydrogenase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.54 GFF5027 Sulfate and thiosulfate binding protein CysP 0.71 GFF4515 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) low > 90
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS12295 ABC transporter permease 0.79 RR42_RS17135 isocitrate dehydrogenase low > 128
Lysobacter sp. OAE881 0.54 ABIE51_RS01855 sulfate ABC transporter substrate-binding protein 0.22 ABIE51_RS14200 isocitrate dehydrogenase — —
Paraburkholderia sabiae LMG 24235 0.54 QEN71_RS22590 sulfate ABC transporter substrate-binding protein 0.79 QEN71_RS02980 NADP-dependent isocitrate dehydrogenase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.54 H281DRAFT_00778 sulfate transport system substrate-binding protein 0.79 H281DRAFT_04085 isocitrate dehydrogenase (NADP) low > 103
Burkholderia phytofirmans PsJN 0.54 BPHYT_RS08790 ABC transporter permease 0.78 BPHYT_RS15730 isocitrate dehydrogenase low > 109
Erwinia tracheiphila SCR3 0.53 LU632_RS21830 sulfate ABC transporter substrate-binding protein 0.78 LU632_RS14560 icd NADP-dependent isocitrate dehydrogenase — —
Castellaniella sp019104865 MT123 0.50 ABCV34_RS03935 sulfate ABC transporter substrate-binding protein 0.78 ABCV34_RS07265 NADP-dependent isocitrate dehydrogenase — —
Synechococcus elongatus PCC 7942 0.35 Synpcc7942_1722 sbpA Thiosulphate-binding protein 0.53 Synpcc7942_1719 icd isocitrate dehydrogenase — —

Not shown: 16 genomes with orthologs for PP_5171 only; 13 genomes with orthologs for PP_4011 only