Conservation of cofitness between PP_2337 and PP_1994 in Pseudomonas putida KT2440

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_2337 aconitate isomerase 1.0 PP_1994 tRNA pseudouridine (38-40)synthase 0.30 19
Pseudomonas fluorescens GW456-L13 0.86 PfGW456L13_4115 2-methylaconitate cis-trans isomerase 0.79 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 87
Cupriavidus basilensis FW507-4G11 0.85 RR42_RS11275 3-methylitaconate isomerase 0.38 RR42_RS14370 tRNA pseudouridine synthase A — —
Pseudomonas simiae WCS417 0.84 PS417_21065 3-methylitaconate isomerase 0.76 PS417_18565 pseudouridine synthase — —
Pseudomonas fluorescens FW300-N2E3 0.84 AO353_00885 3-methylitaconate isomerase 0.77 AO353_20660 pseudouridine synthase low > 101
Pseudomonas fluorescens FW300-N1B4 0.84 Pf1N1B4_3822 2-methylaconitate cis-trans isomerase 0.78 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) — —
Pseudomonas fluorescens SBW25-INTG 0.84 PFLU_RS22675 2-methylaconitate cis-trans isomerase PrpF 0.76 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas fluorescens SBW25 0.84 PFLU_RS22675 2-methylaconitate cis-trans isomerase PrpF 0.76 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas fluorescens FW300-N2E2 0.83 Pf6N2E2_6064 2-methylaconitate isomerase 0.78 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 103
Ralstonia solanacearum PSI07 0.83 RPSI07_RS00385 2-methylaconitate cis-trans isomerase PrpF 0.42 RPSI07_RS14720 tRNA pseudouridine(38-40) synthase TruA low > 81
Pseudomonas fluorescens FW300-N2C3 0.83 AO356_20880 3-methylitaconate isomerase 0.76 AO356_21435 pseudouridine synthase low > 104
Ralstonia solanacearum GMI1000 0.83 RS_RS17725 2-methylaconitate cis-trans isomerase PrpF 0.42 RS_RS09975 tRNA pseudouridine(38-40) synthase TruA low > 80
Ralstonia sp. UNC404CL21Col 0.83 ABZR87_RS16730 2-methylaconitate cis-trans isomerase PrpF 0.41 ABZR87_RS14510 tRNA pseudouridine(38-40) synthase TruA 0.35 51
Lysobacter sp. OAE881 0.83 ABIE51_RS09485 2-methylaconitate cis-trans isomerase PrpF 0.41 ABIE51_RS08245 tRNA pseudouridine(38-40) synthase TruA — —
Pseudomonas sp. RS175 0.82 PFR28_02924 2-methyl-aconitate isomerase 0.78 PFR28_02817 tRNA pseudouridine synthase A low > 88
Pseudomonas sp. S08-1 0.82 OH686_01675 probable AcnD-accessory protein PrpF 0.71 OH686_04450 tRNA pseudouridine(38-40) synthase — —
Paraburkholderia sabiae LMG 24235 0.82 QEN71_RS31055 2-methylaconitate cis-trans isomerase PrpF 0.47 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA low > 153
Shewanella sp. ANA-3 0.81 Shewana3_3828 methylitaconate delta2-delta3-isomerase (RefSeq) 0.53 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) 0.56 52
Xanthomonas campestris pv. campestris strain 8004 0.81 Xcc-8004.3976.1 2-methylaconitate cis-trans isomerase 0.40 Xcc-8004.1961.1 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 74
Burkholderia phytofirmans PsJN 0.81 BPHYT_RS30140 3-methylitaconate isomerase 0.46 BPHYT_RS33885 tRNA pseudouridine synthase A low > 109
Dyella japonica UNC79MFTsu3.2 0.81 ABZR86_RS08430 2-methylaconitate cis-trans isomerase PrpF 0.39 ABZR86_RS08015 tRNA pseudouridine(38-40) synthase TruA low > 74
Ralstonia solanacearum UW163 0.81 UW163_RS23455 2-methylaconitate cis-trans isomerase PrpF 0.41 UW163_RS11130 tRNA pseudouridine(38-40) synthase TruA — —
Ralstonia solanacearum IBSBF1503 0.81 RALBFv3_RS22835 2-methylaconitate cis-trans isomerase PrpF 0.41 RALBFv3_RS02595 tRNA pseudouridine(38-40) synthase TruA — —
Paraburkholderia graminis OAS925 0.81 ABIE53_005044 putative AcnD-accessory protein PrpF 0.45 ABIE53_004807 tRNA pseudouridine38-40 synthase low > 113
Pseudomonas stutzeri RCH2 0.80 Psest_2318 probable AcnD-accessory protein PrpF 0.70 Psest_2585 pseudouridylate synthase I — —
Variovorax sp. SCN45 0.80 GFF269 2-methylaconitate isomerase 0.40 GFF3885 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) low > 127
Paraburkholderia bryophila 376MFSha3.1 0.80 H281DRAFT_02982 2-methylaconitate cis-trans isomerase 0.46 H281DRAFT_06069 tRNA pseudouridine38-40 synthase low > 103
Pseudomonas syringae pv. syringae B728a ΔmexB 0.80 Psyr_2088 2-methylaconitate cis-trans isomerase 0.78 Psyr_1662 tRNA pseudouridine synthase low > 86
Pseudomonas syringae pv. syringae B728a 0.80 Psyr_2088 2-methylaconitate cis-trans isomerase 0.78 Psyr_1662 tRNA pseudouridine synthase low > 86
Herbaspirillum seropedicae SmR1 0.78 HSERO_RS11420 3-methylitaconate isomerase 0.43 HSERO_RS16485 tRNA pseudouridine synthase A — —
Acinetobacter radioresistens SK82 0.78 MPMX26_00659 2-methyl-aconitate isomerase 0.50 MPMX26_00352 tRNA pseudouridine synthase A low > 36
Marinobacter adhaerens HP15 0.76 HP15_1929 AcnD-accessory protein PrpF 0.50 HP15_1829 tRNA pseudouridine synthase A — —
Acidovorax sp. GW101-3H11 0.76 Ac3H11_2325 2-methylaconitate cis-trans isomerase 0.42 Ac3H11_1532 tRNA pseudouridine synthase A (EC 4.2.1.70) — —
Kangiella aquimarina DSM 16071 0.76 B158DRAFT_1346 2-methylaconitate cis-trans isomerase 0.50 B158DRAFT_1483 pseudouridylate synthase I low > 40
Shewanella amazonensis SB2B 0.75 Sama_3297 hypothetical protein (RefSeq) 0.53 Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) low > 62
Azospirillum brasilense Sp245 0.75 AZOBR_RS24310 3-methylitaconate isomerase 0.31 AZOBR_RS03570 tRNA pseudouridine synthase A — —
Shewanella loihica PV-4 0.74 Shew_1823 putative AcnD-accessory protein PrpF (RefSeq) 0.52 Shew_2306 tRNA pseudouridine synthase A (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.72 CSW01_06750 2-methylaconitate cis-trans isomerase PrpF 0.52 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA low > 62
Alteromonas macleodii MIT1002 0.72 MIT1002_03132 3-methylitaconate isomerase 0.50 MIT1002_02529 tRNA pseudouridine synthase A — —
Variovorax sp. OAS795 0.59 ABID97_RS19020 2-methylaconitate cis-trans isomerase PrpF 0.39 ABID97_RS08440 tRNA pseudouridine(38-40) synthase TruA low > 91

Not shown: 1 genomes with orthologs for PP_2337 only; 61 genomes with orthologs for PP_1994 only