Conservation of cofitness between PP_0846 and PP_1994 in Pseudomonas putida KT2440

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0846 DnaK-like molecular chaperone specific for IscU 1.0 PP_1994 tRNA pseudouridine (38-40)synthase 0.31 9
Pseudomonas simiae WCS417 0.88 PS417_23180 chaperone protein HscA 0.76 PS417_18565 pseudouridine synthase — —
Pseudomonas fluorescens FW300-N1B4 0.88 Pf1N1B4_861 Chaperone protein HscA 0.78 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) — —
Pseudomonas fluorescens FW300-N2E3 0.88 AO353_15855 chaperone protein HscA 0.77 AO353_20660 pseudouridine synthase — —
Pseudomonas fluorescens GW456-L13 0.88 PfGW456L13_4869 Chaperone protein HscA 0.79 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) — —
Pseudomonas fluorescens FW300-N2C3 0.88 AO356_06625 chaperone protein HscA 0.76 AO356_21435 pseudouridine synthase — —
Pseudomonas fluorescens SBW25-INTG 0.88 PFLU_RS24835 Fe-S protein assembly chaperone HscA 0.76 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA — —
Pseudomonas fluorescens SBW25 0.88 PFLU_RS24835 Fe-S protein assembly chaperone HscA 0.76 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA — —
Pseudomonas sp. RS175 0.88 PFR28_00290 Chaperone protein HscA 0.78 PFR28_02817 tRNA pseudouridine synthase A — —
Pseudomonas fluorescens FW300-N2E2 0.88 Pf6N2E2_3185 Chaperone protein HscA 0.78 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) — —
Pseudomonas syringae pv. syringae B728a 0.87 Psyr_1241 Fe-S protein assembly chaperone HscA 0.78 Psyr_1662 tRNA pseudouridine synthase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.87 Psyr_1241 Fe-S protein assembly chaperone HscA 0.78 Psyr_1662 tRNA pseudouridine synthase — —
Pseudomonas sp. S08-1 0.82 OH686_17495 Fe-S protein assembly chaperone HscA 0.71 OH686_04450 tRNA pseudouridine(38-40) synthase — —
Pseudomonas stutzeri RCH2 0.79 Psest_1255 Fe-S protein assembly chaperone HscA 0.70 Psest_2585 pseudouridylate synthase I — —
Serratia liquefaciens MT49 0.63 IAI46_19335 Fe-S protein assembly chaperone HscA 0.53 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.63 GFF2431 Chaperone protein HscA 0.54 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 78
Dickeya dadantii 3937 0.62 DDA3937_RS15525 Fe-S protein assembly chaperone HscA 0.51 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA — —
Ralstonia solanacearum IBSBF1503 0.62 RALBFv3_RS14290 Fe-S protein assembly chaperone HscA 0.41 RALBFv3_RS02595 tRNA pseudouridine(38-40) synthase TruA — —
Ralstonia solanacearum UW163 0.62 UW163_RS11755 Fe-S protein assembly chaperone HscA 0.41 UW163_RS11130 tRNA pseudouridine(38-40) synthase TruA — —
Dickeya dianthicola 67-19 0.62 HGI48_RS15625 Fe-S protein assembly chaperone HscA 0.51 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA — —
Ralstonia solanacearum PSI07 0.62 RPSI07_RS19175 Fe-S protein assembly chaperone HscA 0.42 RPSI07_RS14720 tRNA pseudouridine(38-40) synthase TruA — —
Vibrio cholerae E7946 ATCC 55056 0.62 CSW01_03905 chaperone protein HscA 0.52 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA — —
Ralstonia solanacearum GMI1000 0.62 RS_RS05070 molecular chaperone HscA 0.42 RS_RS09975 tRNA pseudouridine(38-40) synthase TruA — —
Dickeya dianthicola ME23 0.61 DZA65_RS16700 Fe-S protein assembly chaperone HscA 0.51 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA — —
Escherichia coli Nissle 1917 0.61 ECOLIN_RS14345 Fe-S protein assembly chaperone HscA 0.53 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA low > 52
Escherichia coli ECRC102 0.61 NIAGMN_19410 hscA Fe-S protein assembly chaperone HscA 0.53 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.61 OHPLBJKB_01183 Chaperone protein HscA 0.53 OHPLBJKB_01387 tRNA pseudouridine synthase A — —
Escherichia coli ECRC101 0.61 OKFHMN_21640 hscA Fe-S protein assembly chaperone HscA 0.53 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC62 0.61 BNILDI_12110 hscA Fe-S protein assembly chaperone HscA 0.53 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA — —
Escherichia coli ECRC101 0.61 MCAODC_12170 hscA Fe-S protein assembly chaperone HscA 0.53 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECOR27 0.61 NOLOHH_13310 hscA Fe-S protein assembly chaperone HscA 0.53 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA — —
Escherichia coli ECRC98 0.61 JDDGAC_25315 hscA Fe-S protein assembly chaperone HscA 0.53 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli BW25113 0.61 b2526 hscA chaperone protein HscA (NCBI) 0.53 b2318 truA tRNA pseudouridine synthase A (NCBI) — —
Escherichia coli ECRC99 0.61 KEDOAH_06580 hscA Fe-S protein assembly chaperone HscA 0.53 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli BL21 0.61 ECD_02418 DnaK-like molecular chaperone specific for IscU 0.53 ECD_02243 tRNA pseudouridine(38-40) synthase — —
Ralstonia sp. UNC404CL21Col 0.61 ABZR87_RS10005 Fe-S protein assembly chaperone HscA 0.41 ABZR87_RS14510 tRNA pseudouridine(38-40) synthase TruA — —
Escherichia coli ECOR38 0.61 HEPCGN_20780 hscA Fe-S protein assembly chaperone HscA 0.53 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase — —
Escherichia fergusonii Becca 0.61 EFB2_01364 Chaperone protein HscA 0.53 EFB2_01540 tRNA pseudouridine synthase A low > 86
Klebsiella michiganensis M5al 0.61 BWI76_RS21140 molecular chaperone HscA 0.54 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA low > 92
Pectobacterium carotovorum WPP14 0.60 HER17_RS06035 Fe-S protein assembly chaperone HscA 0.54 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA low > 75
Enterobacter sp. TBS_079 0.60 MPMX20_03407 Chaperone protein HscA 0.54 MPMX20_03253 tRNA pseudouridine synthase A low > 85
Enterobacter asburiae PDN3 0.60 EX28DRAFT_0114 Fe-S protein assembly chaperone HscA 0.54 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase — —
Burkholderia phytofirmans PsJN 0.60 BPHYT_RS12760 molecular chaperone HscA 0.46 BPHYT_RS33885 tRNA pseudouridine synthase A — —
Paraburkholderia sabiae LMG 24235 0.59 QEN71_RS05805 Fe-S protein assembly chaperone HscA 0.47 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA — —
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS06050 molecular chaperone HscA 0.38 RR42_RS14370 tRNA pseudouridine synthase A — —
Paraburkholderia bryophila 376MFSha3.1 0.59 H281DRAFT_00482 molecular chaperone HscA 0.46 H281DRAFT_06069 tRNA pseudouridine38-40 synthase — —
Shewanella sp. ANA-3 0.59 Shewana3_2276 hscA chaperone protein HscA (RefSeq) 0.53 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) — —
Paraburkholderia graminis OAS925 0.59 ABIE53_002777 molecular chaperone HscA 0.45 ABIE53_004807 tRNA pseudouridine38-40 synthase — —
Kangiella aquimarina DSM 16071 0.58 B158DRAFT_1463 Fe-S protein assembly chaperone HscA 0.50 B158DRAFT_1483 pseudouridylate synthase I low > 40
Shewanella amazonensis SB2B 0.58 Sama_1297 hscA chaperone protein HscA (RefSeq) 0.53 Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) — —
Acidovorax sp. GW101-3H11 0.58 Ac3H11_4108 Chaperone protein HscA 0.42 Ac3H11_1532 tRNA pseudouridine synthase A (EC 4.2.1.70) — —
Herbaspirillum seropedicae SmR1 0.58 HSERO_RS15745 molecular chaperone HscA 0.43 HSERO_RS16485 tRNA pseudouridine synthase A — —
Dechlorosoma suillum PS 0.58 Dsui_2375 Fe-S protein assembly chaperone HscA 0.46 Dsui_3194 pseudouridylate synthase I — —
Shewanella loihica PV-4 0.57 Shew_2313 hscA chaperone protein HscA (RefSeq) 0.52 Shew_2306 tRNA pseudouridine synthase A (RefSeq) — —
Variovorax sp. SCN45 0.57 GFF951 Chaperone protein HscA 0.40 GFF3885 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) — —
Variovorax sp. OAS795 0.56 ABID97_RS14025 Fe-S protein assembly chaperone HscA 0.39 ABID97_RS08440 tRNA pseudouridine(38-40) synthase TruA — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.56 GFF4956 Chaperone protein HscA 0.42 GFF3357 tRNA pseudouridine synthase A (EC 4.2.1.70) — —
Acinetobacter radioresistens SK82 0.51 MPMX26_01323 Chaperone protein HscA 0.50 MPMX26_00352 tRNA pseudouridine synthase A — —
Magnetospirillum magneticum AMB-1 0.47 AMB_RS15235 Fe-S protein assembly chaperone HscA 0.30 AMB_RS01225 tRNA pseudouridine(38-40) synthase TruA — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.42 CA264_19505 Fe-S protein assembly chaperone HscA 0.25 CA264_17725 tRNA pseudouridine synthase A — —
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS03365 molecular chaperone DnaK 0.22 CA265_RS15580 tRNA pseudouridine(38-40) synthase TruA — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.39 ABZR88_RS09340 Fe-S protein assembly chaperone HscA 0.22 ABZR88_RS21140 tRNA pseudouridine(38-40) synthase TruA — —

Not shown: 1 genomes with orthologs for PP_0846 only; 39 genomes with orthologs for PP_1994 only