| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_1876 | | putative ATP/GTP-binding protein of the AAA+ family | 1.0 | PP_1655 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.15 | 15 |
| Pseudomonas fluorescens FW300-N2E2 | 0.90 | Pf6N2E2_2441 | | putative ATP/GTP-binding protein | 0.72 | Pf6N2E2_5722 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.90 | AO356_03065 | | AAA family ATPase | 0.72 | AO356_19055 | | 23S rRNA methyltransferase | low | > 104 |
| Pseudomonas sp. RS175 | 0.89 | PFR28_00989 | | hypothetical protein | 0.72 | PFR28_03224 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.88 | PfGW456L13_2257 | | putative ATP/GTP-binding protein | 0.69 | PfGW456L13_2033 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | low | > 87 |
| Pseudomonas simiae WCS417 | 0.88 | PS417_08585 | | ATPase AAA | 0.72 | PS417_20155 | | 23S rRNA methyltransferase | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.88 | AO353_19175 | | AAA family ATPase | 0.69 | AO353_02715 | | 23S rRNA methyltransferase | low | > 101 |
| Pseudomonas fluorescens SBW25-INTG | 0.88 | PFLU_RS08540 | | ATP-binding protein | 0.73 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.88 | PFLU_RS08540 | | ATP-binding protein | 0.73 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.88 | Pf1N1B4_256 | | putative ATP/GTP-binding protein | 0.72 | Pf1N1B4_3507 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | low | > 87 |
| Pseudomonas syringae pv. syringae B728a | 0.85 | Psyr_3611 | | Protein of unknown function DUF815 | 0.71 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.85 | Psyr_3611 | | Protein of unknown function DUF815 | 0.71 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | low | > 86 |
| Pseudomonas sp. S08-1 | 0.79 | OH686_22600 | | ATP/GTP-binding protein | 0.72 | OH686_18955 | | 23S rRNA (uracil-5-)-methyltransferase RumA | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.77 | Psest_1775 | | Predicted ATPase (AAA+ superfamily) | 0.69 | Psest_1639 | | 23S rRNA (uracil-5-)-methyltransferase RumA | low | > 67 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.50 | H281DRAFT_06250 | | hypothetical protein | 0.33 | H281DRAFT_00846 | | 23S rRNA m(5)U-1939 methyltransferase | low | > 103 |
| Dechlorosoma suillum PS | 0.50 | Dsui_1060 | | putative ATPase (AAA+ superfamily) | 0.31 | Dsui_1981 | | 23S rRNA (uracil-5-)-methyltransferase RumA | low | > 51 |
| Paraburkholderia sabiae LMG 24235 | 0.49 | QEN71_RS27340 | | ATP-binding protein | 0.33 | QEN71_RS22225 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.49 | BPHYT_RS17180 | | ATPase AAA | 0.33 | BPHYT_RS09125 | | 23S rRNA methyltransferase | low | > 109 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.47 | GFF1286 | | putative ATP/GTP-binding protein | 0.29 | GFF3883 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.49 | 2 |
| Castellaniella sp019104865 MT123 | 0.47 | ABCV34_RS14640 | | ATP-binding protein | 0.33 | ABCV34_RS03050 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 48 |
| Ralstonia solanacearum IBSBF1503 | 0.47 | RALBFv3_RS06215 | | DUF815 domain-containing protein | 0.31 | RALBFv3_RS15245 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 76 |
| Ralstonia solanacearum UW163 | 0.47 | UW163_RS07410 | | DUF815 domain-containing protein | 0.31 | UW163_RS12710 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | — | — |
| Ralstonia solanacearum PSI07 | 0.47 | RPSI07_RS11025 | | DUF815 domain-containing protein | 0.31 | RPSI07_RS18130 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 81 |
| Herbaspirillum seropedicae SmR1 | 0.47 | HSERO_RS01735 | | ATPase AAA | 0.31 | HSERO_RS14825 | | 23S rRNA methyltransferase | low | > 78 |
| Ralstonia solanacearum GMI1000 | 0.46 | RS_RS14165 | | DUF815 domain-containing protein | 0.31 | RS_RS06055 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.46 | ABZR87_RS01880 | | ATP-binding protein | 0.33 | ABZR87_RS10885 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 80 |
| Acidovorax sp. GW101-3H11 | 0.46 | Ac3H11_4759 | | putative ATP/GTP-binding protein | 0.29 | Ac3H11_2847 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | low | > 79 |
| Acinetobacter radioresistens SK82 | 0.46 | MPMX26_01131 | | hypothetical protein | 0.38 | MPMX26_00538 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 36 |
| Variovorax sp. SCN45 | 0.44 | GFF2499 | | ATP/GTP-binding protein | 0.29 | GFF2841 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) | low | > 127 |
| Cupriavidus basilensis FW507-4G11 | 0.44 | RR42_RS18015 | | ATPase AAA | 0.32 | RR42_RS13170 | | 23S rRNA methyltransferase | low | > 128 |
| Marinobacter adhaerens HP15 | 0.42 | HP15_3450 | | protein containing DUF815 | 0.40 | HP15_790 | | 23S rRNA 5-methyluridine methyltransferase | low | > 73 |
| Azospirillum sp. SherDot2 | 0.35 | MPMX19_01166 | | hypothetical protein | 0.14 | MPMX19_02196 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.39 | 12 |
| Azospirillum brasilense Sp245 | 0.35 | AZOBR_RS15445 | | ATPase AAA | 0.14 | AZOBR_RS01195 | | RNA methyltransferase | low | > 97 |
| Sinorhizobium meliloti 1021 | 0.34 | SMc02059 | | hypothetical protein | 0.16 | SMc00974 | | RNA methyltransferase | low | > 103 |
| Phaeobacter inhibens DSM 17395 | 0.34 | PGA1_c10740 | | Predicted ATPase (AAA+ superfamily) | 0.14 | PGA1_c34810 | | putative RNA methyltransferase | low | > 62 |
| Bosea sp. OAE506 | 0.34 | ABIE41_RS15030 | | ATP-binding protein | 0.13 | ABIE41_RS22255 | | RNA methyltransferase | low | > 77 |
| Magnetospirillum magneticum AMB-1 | 0.34 | AMB_RS12655 | | DUF815 domain-containing protein | 0.16 | AMB_RS01660 | | class I SAM-dependent RNA methyltransferase | low | > 64 |
| Dinoroseobacter shibae DFL-12 | 0.34 | Dshi_1346 | | protein of unknown function DUF815 (RefSeq) | 0.13 | Dshi_3492 | | (Uracil-5)-methyltransferase (RefSeq) | low | > 64 |
| Rhizobium sp. OAE497 | 0.33 | ABIE40_RS08495 | | ATP-binding protein | 0.16 | ABIE40_RS03880 | | class I SAM-dependent RNA methyltransferase | low | > 107 |
| Agrobacterium fabrum C58 | 0.31 | Atu1564 | | hypothetical protein | 0.16 | Atu0735 | | RNA methyltransferase | low | > 89 |
| Rhodospirillum rubrum S1H | 0.31 | Rru_A1766 | | Protein of unknown function DUF815 (NCBI) | 0.14 | Rru_A2107 | | 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.27 | Ga0059261_1365 | | Predicted ATPase (AAA+ superfamily) | 0.12 | Ga0059261_0648 | | SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase | low | > 68 |
| Caulobacter crescentus NA1000 | 0.26 | CCNA_02072 | | ATP-dependent protease subunit | 0.16 | CCNA_01387 | | tRNA (uracil-5-)-methyltransferase related protein | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.26 | CCNA_02072 | | ATP-dependent protease subunit | 0.16 | CCNA_01387 | | tRNA (uracil-5-)-methyltransferase related protein | low | > 67 |