Conservation of cofitness between PP_0395 and PP_0951 in Pseudomonas putida KT2440

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0395 putative type IV piliation protein 1.0 PP_0951 Ribosome hibernation promoting factor 0.68 3
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_14305 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) 0.81 AO356_07040 hypothetical protein low > 104
Pseudomonas sp. RS175 0.92 PFR28_04070 hypothetical protein 0.80 PFR28_00172 Ribosome hibernation promoting factor low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_4633 SpoVR 0.78 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P low > 86
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_4633 SpoVR 0.78 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P low > 86
Pseudomonas fluorescens FW300-N2E2 0.90 Pf6N2E2_4799 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) 0.81 Pf6N2E2_3268 Ribosome hibernation protein YhbH low > 103
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_07345 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) 0.80 AO353_05185 hypothetical protein low > 101
Pseudomonas fluorescens GW456-L13 0.89 PfGW456L13_1194 FIG004684: SpoVR-like protein 0.81 PfGW456L13_5015 Ribosome hibernation protein YhbH low > 87
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_2521 FIG004684: SpoVR-like protein 0.81 Pf1N1B4_1081 Ribosome hibernation protein YhbH low > 87
Pseudomonas simiae WCS417 0.88 PS417_25840 SpoVR family protein 0.83 PS417_04340 ribosome hibernation promoting factor HPF 0.41 20
Pseudomonas fluorescens SBW25-INTG 0.88 PFLU_RS27495 SpoVR family protein 0.70 PFLU_RS04395 ribosome-associated translation inhibitor RaiA low > 109
Pseudomonas fluorescens SBW25 0.88 PFLU_RS27495 SpoVR family protein 0.70 PFLU_RS04395 ribosome-associated translation inhibitor RaiA low > 109
Pseudomonas sp. S08-1 0.87 OH686_15010 SpoVR-like protein 0.78 OH686_08550 Ribosome hibernation promoting factor Hpf low > 80
Pseudomonas stutzeri RCH2 0.86 Psest_3674 Uncharacterized conserved protein 0.66 Psest_3314 ribosomal subunit interface protein low > 67
Marinobacter adhaerens HP15 0.74 HP15_2935 SpoVR family protein 0.62 HP15_2443 sigma 54 modulation protein/ribosomal protein S30EA 0.59 11
Shewanella amazonensis SB2B 0.69 Sama_1923 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) 0.60 Sama_3089 ribosomal subunit interface protein (RefSeq) low > 62
Pectobacterium carotovorum WPP14 0.68 HER17_RS11210 SpoVR family protein 0.56 HER17_RS20065 ribosome hibernation promoting factor low > 75
Dickeya dadantii 3937 0.68 DDA3937_RS11175 SpoVR family protein 0.51 DDA3937_RS01525 ribosome hibernation promoting factor low > 74
Klebsiella michiganensis M5al 0.68 BWI76_RS17740 SpoVR family protein 0.51 BWI76_RS25270 ribosome hibernation promoting factor low > 92
Dickeya dianthicola 67-19 0.68 HGI48_RS11200 SpoVR family protein 0.51 HGI48_RS01440 ribosome hibernation promoting factor low > 71
Dickeya dianthicola ME23 0.68 DZA65_RS11545 SpoVR family protein 0.51 DZA65_RS01505 ribosome hibernation promoting factor low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.68 GFF2805 FIG004684: SpoVR-like protein 0.51 GFF2947 Ribosome hibernation protein YhbH low > 78
Vibrio cholerae E7946 ATCC 55056 0.68 CSW01_09390 SpoVR family protein 0.51 CSW01_12820 ribosome hibernation promoting factor low > 62
Enterobacter asburiae PDN3 0.68 EX28DRAFT_0765 Uncharacterized conserved protein 0.52 EX28DRAFT_3257 ribosomal subunit interface protein low > 76
Serratia liquefaciens MT49 0.67 IAI46_14470 SpoVR family protein 0.55 IAI46_22475 ribosome hibernation promoting factor low > 86
Alteromonas macleodii MIT1002 0.67 MIT1002_01231 SpoVR family protein 0.60 MIT1002_00826 Ribosome hibernation promoting factor low > 70
Enterobacter sp. TBS_079 0.67 MPMX20_02700 hypothetical protein 0.51 MPMX20_04109 Ribosome hibernation promoting factor low > 85
Escherichia coli Nissle 1917 0.67 ECOLIN_RS07180 SpoVR family protein 0.53 ECOLIN_RS18430 ribosome hibernation promoting factor — —
Escherichia coli ECRC99 0.67 KEDOAH_25300 ycgB SpoVR family protein 0.53 KEDOAH_10215 Ribosome hibernation promoting factor — —
Escherichia coli ECRC101 0.67 OKFHMN_28285 ycgB SpoVR family protein 0.53 OKFHMN_17935 Ribosome hibernation promoting factor — —
Escherichia coli ECRC102 0.67 NIAGMN_27935 ycgB SpoVR family protein 0.53 NIAGMN_15695 Ribosome hibernation promoting factor — —
Escherichia coli ECRC98 0.67 JDDGAC_06225 ycgB SpoVR family protein 0.53 JDDGAC_21560 Ribosome hibernation promoting factor — —
Escherichia fergusonii Becca 0.67 EFB2_02744 hypothetical protein 0.53 EFB2_00620 Ribosome hibernation promoting factor low > 86
Escherichia coli ECRC101 0.67 MCAODC_21885 ycgB SpoVR family protein 0.53 MCAODC_08455 Ribosome hibernation promoting factor — —
Escherichia coli ECOR38 0.67 HEPCGN_24745 ycgB SpoVR family protein 0.53 HEPCGN_16810 Ribosome hibernation promoting factor low > 85
Escherichia coli BL21 0.67 ECD_01163 SpoVR family stationary phase protein 0.53 ECD_03068 ribosome hibernation promoting factor HPF; stabilizes 100S dimers low > 60
Escherichia coli ECRC62 0.67 BNILDI_18895 ycgB SpoVR family protein 0.53 BNILDI_01800 Ribosome hibernation promoting factor — —
Escherichia coli BW25113 0.67 b1188 ycgB ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) 0.53 b3203 yhbH predicted ribosome-associated, sigma 54 modulation protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_02501 hypothetical protein 0.53 OHPLBJKB_00497 Ribosome hibernation promoting factor low > 73
Escherichia coli ECOR27 0.67 NOLOHH_20730 ycgB SpoVR family protein 0.53 NOLOHH_09735 Ribosome hibernation promoting factor low > 57
Pantoea sp. MT58 0.67 IAI47_08885 SpoVR family protein 0.53 IAI47_17190 ribosome hibernation promoting factor low > 76
Rahnella sp. WP5 0.67 EX31_RS10500 SpoVR family protein 0.58 EX31_RS12395 ribosome hibernation promoting factor low > 89
Variovorax sp. SCN45 0.67 GFF2935 FIG004684: SpoVR-like protein 0.45 GFF7293 Ribosome hibernation promoting factor Hpf 0.74 111
Shewanella sp. ANA-3 0.67 Shewana3_1636 SpoVR family protein (RefSeq) 0.59 Shewana3_0671 sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq) low > 73
Shewanella oneidensis MR-1 0.67 SO2884 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) 0.58 SO3962 yfiA-3 ribosomal subunit interface protein (NCBI ptt file) low > 76
Cupriavidus basilensis FW507-4G11 0.67 RR42_RS36475 SpoVR family protein 0.46 RR42_RS02080 ribosome hibernation promoting factor low > 128
Erwinia tracheiphila SCR3 0.67 LU632_RS13075 SpoVR family protein 0.53 LU632_RS21285 hpf ribosome hibernation promoting factor low > 74
Shewanella loihica PV-4 0.67 Shew_1831 hypothetical protein (RefSeq) 0.63 Shew_3312 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) low > 60
Paraburkholderia graminis OAS925 0.66 ABIE53_002316 stage V sporulation protein R 0.41 ABIE53_000717 putative sigma-54 modulation protein low > 113
Paraburkholderia bryophila 376MFSha3.1 0.66 H281DRAFT_05234 Stage V sporulation protein SpoVR/YcgB, involved in spore cortex formation 0.40 H281DRAFT_01928 sigma 54 modulation protein /SSU ribosomal protein S30P low > 103
Burkholderia phytofirmans PsJN 0.66 BPHYT_RS11180 SpoVR family protein 0.41 BPHYT_RS02900 ribosome hibernation promoting factor low > 109
Paraburkholderia sabiae LMG 24235 0.65 QEN71_RS07385 SpoVR family protein 0.39 QEN71_RS01750 ribosome-associated translation inhibitor RaiA low > 153
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS14210 SpoVR family protein 0.41 ABZR87_RS07055 ribosome-associated translation inhibitor RaiA low > 80
Acidovorax sp. GW101-3H11 0.63 Ac3H11_1147 FIG004684: SpoVR-like protein 0.46 Ac3H11_681 Ribosome hibernation protein YhbH 0.33 9
Castellaniella sp019104865 MT123 0.12 ABCV34_RS05550 SpoVR family protein 0.43 ABCV34_RS14345 ribosome-associated translation inhibitor RaiA low > 48

Not shown: 8 genomes with orthologs for PP_0395 only; 20 genomes with orthologs for PP_0951 only