Conservation of cofitness between IAI46_03985 and IAI46_04980 in Serratia liquefaciens MT49

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Serratia liquefaciens MT49 1.0 IAI46_03985 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 1.0 IAI46_04980 cytochrome o ubiquinol oxidase subunit I 0.68 8
Rahnella sp. WP5 0.92 EX31_RS07570 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.93 EX31_RS22215 cytochrome o ubiquinol oxidase subunit I low > 89
Pectobacterium carotovorum WPP14 0.91 HER17_RS05400 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.89 HER17_RS15880 cytochrome o ubiquinol oxidase subunit I low > 75
Dickeya dadantii 3937 0.91 DDA3937_RS16110 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.88 DDA3937_RS05610 cytochrome o ubiquinol oxidase subunit I low > 74
Dickeya dianthicola 67-19 0.90 HGI48_RS16235 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.88 HGI48_RS05655 cytochrome o ubiquinol oxidase subunit I low > 71
Dickeya dianthicola ME23 0.90 DZA65_RS17330 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.88 DZA65_RS05980 cytochrome o ubiquinol oxidase subunit I low > 75
Pantoea sp. MT58 0.89 IAI47_04425 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.85 IAI47_14685 cytochrome o ubiquinol oxidase subunit I low > 76
Escherichia coli ECRC101 0.88 MCAODC_11780 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.88 MCAODC_27590 cyoB cytochrome o ubiquinol oxidase subunit I — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.88 OHPLBJKB_01112 Ribosomal large subunit pseudouridine synthase D 0.88 OHPLBJKB_03242 Cytochrome bo(3) ubiquinol oxidase subunit 1 low > 73
Escherichia coli Nissle 1917 0.88 ECOLIN_RS14675 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.88 ECOLIN_RS02590 cytochrome o ubiquinol oxidase subunit I 0.70 49
Escherichia coli ECRC99 0.88 KEDOAH_06970 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.88 KEDOAH_19600 cyoB cytochrome o ubiquinol oxidase subunit I — —
Escherichia coli ECRC98 0.88 JDDGAC_24915 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.88 JDDGAC_12020 cyoB cytochrome o ubiquinol oxidase subunit I — —
Escherichia coli ECRC101 0.88 OKFHMN_21250 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.88 OKFHMN_08365 cyoB cytochrome o ubiquinol oxidase subunit I — —
Escherichia coli BW25113 0.88 b2594 rluD 23S rRNA pseudouridine synthase (NCBI) 0.88 b0431 cyoB cytochrome o ubiquinol oxidase subunit I (NCBI) — —
Escherichia coli BL21 0.88 ECD_02484 23S rRNA pseudouridine(1911,1915,1917) synthase 0.88 ECD_00382 cytochrome o ubiquinol oxidase subunit I low > 60
Escherichia coli ECOR38 0.88 HEPCGN_20375 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.88 HEPCGN_06980 cyoB cytochrome o ubiquinol oxidase subunit I 0.92 8
Escherichia fergusonii Becca 0.88 EFB2_01296 Ribosomal large subunit pseudouridine synthase D 0.88 EFB2_03626 Cytochrome bo(3) ubiquinol oxidase subunit 1 low > 86
Escherichia coli ECRC102 0.88 NIAGMN_19020 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.88 NIAGMN_06420 cyoB cytochrome o ubiquinol oxidase subunit I — —
Enterobacter sp. TBS_079 0.88 MPMX20_03463 Ribosomal large subunit pseudouridine synthase D 0.88 MPMX20_01022 Cytochrome bo(3) ubiquinol oxidase subunit 1 low > 85
Escherichia coli ECRC62 0.87 BNILDI_11730 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.88 BNILDI_22715 cyoB cytochrome o ubiquinol oxidase subunit I — —
Enterobacter asburiae PDN3 0.87 EX28DRAFT_2695 pseudouridine synthase, RluA family 0.88 EX28DRAFT_2540 cytochrome o ubiquinol oxidase, subunit I low > 76
Klebsiella michiganensis M5al 0.87 BWI76_RS21450 23S rRNA pseudouridine(1911/1915/1917) synthase 0.88 BWI76_RS06490 cytochrome ubiquinol oxidase subunit I low > 92
Escherichia coli ECOR27 0.87 NOLOHH_12925 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.88 NOLOHH_01300 cyoB cytochrome o ubiquinol oxidase subunit I low > 57
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.87 GFF4182 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.86 GFF4345 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) low > 78
Erwinia tracheiphila SCR3 0.86 LU632_RS16945 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.87 LU632_RS18380 cyoB cytochrome o ubiquinol oxidase subunit I — —
Alteromonas macleodii MIT1002 0.66 MIT1002_02679 Ribosomal large subunit pseudouridine synthase D 0.67 MIT1002_03928 Ubiquinol oxidase subunit 1 low > 70
Shewanella sp. ANA-3 0.65 Shewana3_3171 ribosomal large subunit pseudouridine synthase D (RefSeq) 0.69 Shewana3_4032 cytochrome c oxidase, subunit I (RefSeq) low > 73
Shewanella loihica PV-4 0.64 Shew_2950 RluA family pseudouridine synthase (RefSeq) 0.70 Shew_0367 cytochrome-c oxidase (RefSeq) low > 60
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_15925 ribosomal large subunit pseudouridine synthase D 0.70 AO356_16965 cytochrome o ubiquinol oxidase subunit I low > 104
Pseudomonas putida KT2440 0.55 PP_0623 23S rRNA pseudouridine(1911,1915,1917) synthase 0.71 PP_0813 cytochrome bo terminal oxidase subunit I — —
Pseudomonas simiae WCS417 0.55 PS417_03820 ribosomal large subunit pseudouridine synthase D 0.72 PS417_23385 cytochrome o ubiquinol oxidase subunit I — —
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.71 PFLU_RS25215 cytochrome o ubiquinol oxidase subunit I low > 109
Pseudomonas fluorescens SBW25 0.55 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.71 PFLU_RS25215 cytochrome o ubiquinol oxidase subunit I low > 109
Pseudomonas sp. RS175 0.55 PFR28_03748 Ribosomal large subunit pseudouridine synthase D 0.70 PFR28_00243 Cytochrome bo(3) ubiquinol oxidase subunit 1 low > 88
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_14220 ribosomal large subunit pseudouridine synthase D 0.70 AO353_15455 cytochrome o ubiquinol oxidase subunit I low > 101
Pseudomonas fluorescens FW300-N2E2 0.55 Pf6N2E2_5127 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.70 Pf6N2E2_5318 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) — —
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_1493 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.68 PfGW456L13_4935 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) — —
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_2822 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.71 Pf1N1B4_972 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.54 Psyr_0726 ribosomal large subunit pseudouridine synthase D 0.71 Psyr_1142 cytochrome bo3 quinol oxidase subunit 1 apoprotein — —
Pseudomonas syringae pv. syringae B728a 0.54 Psyr_0726 ribosomal large subunit pseudouridine synthase D 0.71 Psyr_1142 cytochrome bo3 quinol oxidase subunit 1 apoprotein — —
Lysobacter sp. OAE881 0.53 ABIE51_RS04885 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.65 ABIE51_RS09770 cytochrome o ubiquinol oxidase subunit I 0.52 59
Xanthomonas campestris pv. campestris strain 8004 0.52 Xcc-8004.1362.1 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.71 Xcc-8004.3816.1 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) low > 74
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS10965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.66 ABZR86_RS07620 cytochrome o ubiquinol oxidase subunit I 0.57 5
Acinetobacter radioresistens SK82 0.42 MPMX26_00735 Ribosomal large subunit pseudouridine synthase D 0.67 MPMX26_01161 Cytochrome bo(3) ubiquinol oxidase subunit 1 low > 36
Ralstonia solanacearum PSI07 0.41 RPSI07_RS15970 RluA family pseudouridine synthase 0.73 RPSI07_RS10570 cytochrome o ubiquinol oxidase subunit I low > 81
Ralstonia solanacearum UW163 0.41 UW163_RS14830 RluA family pseudouridine synthase 0.72 UW163_RS06970 cytochrome o ubiquinol oxidase subunit I — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS01520 RluA family pseudouridine synthase 0.72 RALBFv3_RS06655 cytochrome o ubiquinol oxidase subunit I low > 76
Ralstonia solanacearum GMI1000 0.41 RS_RS08205 RluA family pseudouridine synthase 0.72 RS_RS14605 cytochrome o ubiquinol oxidase subunit I low > 80
Ralstonia sp. UNC404CL21Col 0.39 ABZR87_RS13315 RluA family pseudouridine synthase 0.73 ABZR87_RS02330 cytochrome o ubiquinol oxidase subunit I low > 80
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS15070 ribosomal large subunit pseudouridine synthase D 0.67 HSERO_RS12315 cytochrome O ubiquinol oxidase — —
Sphingomonas koreensis DSMZ 15582 0.35 Ga0059261_0664 pseudouridine synthase, RluA family 0.63 Ga0059261_1565 cytochrome bo3 quinol oxidase subunit 1 apoprotein (EC 1.10.3.-) low > 68
Azospirillum sp. SherDot2 0.35 MPMX19_05442 Ribosomal large subunit pseudouridine synthase D 0.67 MPMX19_06176 Cytochrome bo(3) ubiquinol oxidase subunit 1 — —
Rhizobium sp. OAE497 0.33 ABIE40_RS14790 RluA family pseudouridine synthase 0.68 ABIE40_RS19820 cytochrome o ubiquinol oxidase subunit I low > 107
Acidovorax sp. GW101-3H11 0.32 Ac3H11_1787 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.62 Ac3H11_3142 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) — —
Variovorax sp. SCN45 0.31 GFF988 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) 0.67 GFF5677 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) 0.75 36
Sinorhizobium meliloti 1021 0.30 SMc00647 ribosomal large subunit pseudouridine synthase 0.68 SM_b21488 cytochrome o ubiquinol oxidase subunit I low > 103
Agrobacterium fabrum C58 0.30 Atu2443 ribosomal large subunit pseudouridine synthase, RluD subfamily 0.67 Atu0141 cytochrome O ubiquinol oxidase subunit I — —
Variovorax sp. OAS795 0.29 ABID97_RS14190 RluA family pseudouridine synthase 0.67 ABID97_RS07635 cytochrome o ubiquinol oxidase subunit I low > 91
Caulobacter crescentus NA1000 0.29 CCNA_00485 ribosomal large subunit pseudouridine synthase D 0.69 CCNA_01850 quinol cytochrome oxidase polypeptide I low > 66
Caulobacter crescentus NA1000 Δfur 0.29 CCNA_00485 ribosomal large subunit pseudouridine synthase D 0.69 CCNA_01850 quinol cytochrome oxidase polypeptide I low > 67
Bosea sp. OAE506 0.29 ABIE41_RS05635 RluA family pseudouridine synthase 0.64 ABIE41_RS21025 cytochrome o ubiquinol oxidase subunit I low > 77
Brevundimonas sp. GW460-12-10-14-LB2 0.27 A4249_RS10060 RluA family pseudouridine synthase 0.65 A4249_RS04450 cytochrome o ubiquinol oxidase subunit I low > 48
Mycobacterium tuberculosis H37Rv 0.22 Rv1540 Conserved hypothetical protein member of yabO/yceC/yfiI family 0.30 Rv3043c Probable cytochrome C oxidase polypeptide I CtaD (cytochrome AA3 subunit 1) — —

Not shown: 31 genomes with orthologs for IAI46_03985 only; 6 genomes with orthologs for IAI46_04980 only