Conservation of cofitness between IAI46_04840 and IAI46_00110 in Serratia liquefaciens MT49

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Serratia liquefaciens MT49 1.0 IAI46_04840 tRNA guanosine(34) transglycosylase Tgt 1.0 IAI46_00110 OmpA family lipoprotein 0.44 18
Rahnella sp. WP5 0.94 EX31_RS22095 tRNA guanosine(34) transglycosylase Tgt 0.75 EX31_RS05890 OmpA family lipoprotein low > 89
Enterobacter sp. TBS_079 0.92 MPMX20_00997 Queuine tRNA-ribosyltransferase 0.80 MPMX20_00182 putative lipoprotein YiaD low > 85
Enterobacter asburiae PDN3 0.92 EX28DRAFT_2565 tRNA-guanine transglycosylase 0.79 EX28DRAFT_3812 Outer membrane protein and related peptidoglycan-associated (lipo)proteins low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.92 GFF4305 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.79 GFF459 Outer membrane protein A precursor low > 78
Klebsiella michiganensis M5al 0.92 BWI76_RS06300 tRNA guanosine(34) transglycosylase Tgt 0.79 BWI76_RS26935 OmpA family lipoprotein — —
Pantoea sp. MT58 0.92 IAI47_14805 tRNA guanosine(34) transglycosylase Tgt 0.75 IAI47_00140 OmpA family lipoprotein low > 76
Escherichia coli ECRC101 0.91 MCAODC_27730 tgt tRNA guanosine(34) transglycosylase Tgt 0.77 MCAODC_06540 yiaD OmpA family lipoprotein low > 87
Escherichia coli BL21 0.91 ECD_00354 tRNA-guanine transglycosylase 0.80 ECD_03402 multicopy suppressor of bamB; outer membrane lipoprotein low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.91 OHPLBJKB_03270 Queuine tRNA-ribosyltransferase 0.77 OHPLBJKB_00154 putative lipoprotein YiaD low > 73
Escherichia coli ECRC98 0.91 JDDGAC_12160 tgt tRNA guanosine(34) transglycosylase Tgt 0.77 JDDGAC_19655 yiaD OmpA family lipoprotein low > 86
Escherichia coli ECOR38 0.91 HEPCGN_07145 tgt tRNA guanosine(34) transglycosylase Tgt 0.77 HEPCGN_14915 yiaD OmpA family lipoprotein low > 87
Escherichia coli Nissle 1917 0.91 ECOLIN_RS02445 tRNA guanosine(34) transglycosylase Tgt 0.77 ECOLIN_RS20325 OmpA family lipoprotein — —
Escherichia coli ECRC102 0.91 NIAGMN_06560 tgt tRNA guanosine(34) transglycosylase Tgt 0.77 NIAGMN_13785 yiaD OmpA family lipoprotein — —
Escherichia coli ECRC62 0.91 BNILDI_22855 tgt tRNA guanosine(34) transglycosylase Tgt 0.77 BNILDI_03575 yiaD OmpA family lipoprotein low > 75
Escherichia coli ECOR27 0.91 NOLOHH_01440 tgt tRNA guanosine(34) transglycosylase Tgt 0.77 NOLOHH_07970 yiaD OmpA family lipoprotein low > 75
Escherichia fergusonii Becca 0.91 EFB2_03651 Queuine tRNA-ribosyltransferase 0.78 EFB2_00255 putative lipoprotein YiaD low > 86
Escherichia coli ECRC100 0.91 OKFHMN_08505 tgt tRNA guanosine(34) transglycosylase Tgt 0.77 OKFHMN_16025 yiaD OmpA family lipoprotein low > 80
Escherichia coli BW25113 0.91 b0406 tgt queuine tRNA-ribosyltransferase (NCBI) 0.77 b3552 yiaD predicted outer membrane lipoprotien (NCBI) low > 76
Escherichia coli ECRC99 0.91 KEDOAH_19460 tgt tRNA guanosine(34) transglycosylase Tgt 0.77 KEDOAH_12125 yiaD OmpA family lipoprotein — —
Vibrio cholerae E7946 ATCC 55056 0.84 CSW01_03850 tRNA guanosine(34) transglycosylase Tgt 0.34 CSW01_06045 lipoprotein low > 62
Shewanella sp. ANA-3 0.83 Shewana3_1435 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.46 Shewana3_0665 OmpA/MotB domain-containing protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.83 SO3113 tgt queuine tRNA-ribosyltransferase (NCBI ptt file) 0.47 SO3969 OmpA family protein (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.83 Shew_2337 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.47 Shew_0908 OmpA/MotB domain-containing protein (RefSeq) low > 60
Shewanella amazonensis SB2B 0.83 Sama_2193 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.46 Sama_3096 OmpA family protein (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.77 MIT1002_02813 Queuine tRNA-ribosyltransferase 0.30 MIT1002_04106 Inner membrane lipoprotein YiaD precursor low > 70
Pseudomonas sp. S08-1 0.76 OH686_17430 tRNA-guanine transglycosylase 0.35 OH686_06290 Outer membrane porin, OmpA family low > 80
Pseudomonas stutzeri RCH2 0.74 Psest_1242 tRNA-guanine transglycosylase, queuosine-34-forming 0.48 Psest_3218 Outer membrane protein and related peptidoglycan-associated (lipo)proteins low > 67
Pseudomonas sp. RS175 0.74 PFR28_00277 Queuine tRNA-ribosyltransferase 0.39 PFR28_00255 putative lipoprotein YiaD low > 88
Pseudomonas fluorescens FW300-N2E3 0.74 AO353_15790 queuine tRNA-ribosyltransferase 0.38 AO353_15165 cell envelope biogenesis protein OmpA — —
Pseudomonas fluorescens FW300-N1B4 0.74 Pf1N1B4_3006 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.39 Pf1N1B4_2964 Outer membrane protein assembly factor YaeT precursor low > 87
Pseudomonas fluorescens FW300-N2C3 0.74 AO356_06690 queuine tRNA-ribosyltransferase 0.38 AO356_17015 cell envelope biogenesis protein OmpA low > 104
Pseudomonas fluorescens FW300-N2E2 0.74 Pf6N2E2_3198 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.38 Pf6N2E2_5327 Outer membrane protein assembly factor YaeT precursor low > 103
Pseudomonas putida KT2440 0.74 PP_0833 queuine tRNA-ribosyltransferase 0.34 PP_0773 OmpA/MotB domain-containing protein low > 96
Pseudomonas fluorescens GW456-L13 0.73 PfGW456L13_4882 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.39 PfGW456L13_1624 Outer membrane protein assembly factor YaeT precursor low > 87
Pseudomonas syringae pv. syringae B728a 0.73 Psyr_1228 tRNA-guanine transglycosylase 0.35 Psyr_1005 OmpA/MotB — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.73 Psyr_1228 tRNA-guanine transglycosylase 0.35 Psyr_1005 OmpA/MotB — —
Pseudomonas fluorescens SBW25-INTG 0.73 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.36 PFLU_RS04630 OmpA family lipoprotein low > 109
Pseudomonas simiae WCS417 0.73 PS417_23245 queuine tRNA-ribosyltransferase 0.36 PS417_04565 cell envelope biogenesis protein OmpA — —
Pseudomonas fluorescens SBW25 0.73 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.36 PFLU_RS04630 OmpA family lipoprotein low > 109
Kangiella aquimarina DSM 16071 0.73 B158DRAFT_2516 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.32 B158DRAFT_2386 Outer membrane protein and related peptidoglycan-associated (lipo)proteins low > 40
Marinobacter adhaerens HP15 0.73 HP15_1479 queuine tRNA-ribosyltransferase 0.44 HP15_2555 OmpA/MotB domain protein low > 73
Acinetobacter radioresistens SK82 0.69 MPMX26_00438 Queuine tRNA-ribosyltransferase 0.34 MPMX26_02417 putative lipoprotein YiaD low > 36
Cupriavidus basilensis FW507-4G11 0.65 RR42_RS17400 queuine tRNA-ribosyltransferase 0.29 RR42_RS16015 membrane protein low > 128
Phaeobacter inhibens DSM 17395 0.53 PGA1_c20570 queuine tRNA-ribosyltransferase Tgt 0.35 PGA1_c29000 inner membrane lipoprotein low > 62
Dinoroseobacter shibae DFL-12 0.53 Dshi_2346 queuine tRNA-ribosyltransferase (RefSeq) 0.24 Dshi_3025 OmpA/MotB domain protein (RefSeq) low > 64
Sphingomonas koreensis DSMZ 15582 0.51 Ga0059261_1017 tRNA-guanine transglycosylase 0.36 Ga0059261_1444 Outer membrane protein and related peptidoglycan-associated (lipo)proteins low > 68
Brevundimonas sp. GW460-12-10-14-LB2 0.51 A4249_RS02905 tRNA guanosine(34) transglycosylase Tgt 0.32 A4249_RS13240 OmpA family protein low > 48
Sinorhizobium meliloti 1021 0.51 SMc01206 queuine tRNA-ribosyltransferase 0.38 SMc00354 hypothetical protein — —
Caulobacter crescentus NA1000 Δfur 0.50 CCNA_01659 queuine tRNA-ribosyltransferase 0.34 CCNA_00201 outer membrane protein low > 67
Caulobacter crescentus NA1000 0.50 CCNA_01659 queuine tRNA-ribosyltransferase 0.34 CCNA_00201 outer membrane protein low > 66
Agrobacterium fabrum C58 0.49 Atu1677 queuine tRNA-ribosyltransferase 0.36 Atu2722 porin 0.33 42
Rhizobium sp. OAE497 0.49 ABIE40_RS09435 tRNA guanosine(34) transglycosylase Tgt 0.37 ABIE40_RS11645 OmpA family protein low > 107
Bacteroides thetaiotaomicron VPI-5482 0.45 BT0835 tRNA-guanine transglycosylase (NCBI ptt file) 0.17 BT1194 outer membrane protein, OmpA family (NCBI ptt file) — —
Bacteroides ovatus ATCC 8483 0.45 BACOVA_02570 tRNA-guanine transglycosylase 0.16 BACOVA_03981 OmpA family protein low > 94

Not shown: 45 genomes with orthologs for IAI46_04840 only; 0 genomes with orthologs for IAI46_00110 only