| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS16870 | | D-alanyl-D-alanine carboxypeptidase | 1.0 | HSERO_RS17315 | | ATP-dependent helicase | 0.31 | 2 |
| Acidovorax sp. GW101-3H11 | 0.39 | Ac3H11_670 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.56 | Ac3H11_896 | | macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. | low | > 79 |
| Ralstonia solanacearum PSI07 | 0.37 | RPSI07_RS21110 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.65 | RPSI07_RS17865 | | ATP-dependent RNA helicase HrpA | low | > 81 |
| Variovorax sp. SCN45 | 0.37 | GFF5516 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.55 | GFF247 | | ATP-dependent helicase HrpA | low | > 127 |
| Ralstonia solanacearum GMI1000 | 0.37 | RS_RS02925 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.64 | RS_RS06270 | | ATP-dependent RNA helicase HrpA | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.37 | RALBFv3_RS12220 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.64 | RALBFv3_RS15490 | | ATP-dependent RNA helicase HrpA | low | > 76 |
| Ralstonia solanacearum UW163 | 0.37 | UW163_RS01390 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.64 | UW163_RS12950 | | ATP-dependent RNA helicase HrpA | — | — |
| Ralstonia sp. UNC404CL21Col | 0.36 | ABZR87_RS08110 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.64 | ABZR87_RS11020 | | ATP-dependent RNA helicase HrpA | low | > 80 |
| Variovorax sp. OAS795 | 0.36 | ABID97_RS01685 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.55 | ABID97_RS16615 | | ATP-dependent RNA helicase HrpA | low | > 91 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.36 | H281DRAFT_04181 | | D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) | 0.66 | H281DRAFT_00445 | | ATP-dependent helicase HrpA | low | > 103 |
| Cupriavidus basilensis FW507-4G11 | 0.36 | RR42_RS03245 | | D-alanyl-D-alanine carboxypeptidase | 0.66 | RR42_RS13030 | | ATP-dependent helicase | low | > 128 |
| Paraburkholderia graminis OAS925 | 0.36 | ABIE53_003419 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) | 0.65 | ABIE53_002813 | | ATP-dependent helicase HrpA | low | > 113 |
| Pseudomonas putida KT2440 | 0.35 | PP_2098 | | D-alanyl-D-alanine carboxypeptidase | 0.37 | PP_4546 | | ATP-dependent helicase HrpA | low | > 96 |
| Pseudomonas sp. S08-1 | 0.35 | OH686_03105 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.37 | OH686_05730 | | RNA helicase HrpA | low | > 80 |
| Pseudomonas fluorescens SBW25 | 0.35 | PFLU_RS22535 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.38 | PFLU_RS22265 | | ATP-dependent RNA helicase HrpA | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.35 | PFLU_RS22535 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.38 | PFLU_RS22265 | | ATP-dependent RNA helicase HrpA | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.35 | AO353_00765 | | D-alanyl-D-alanine carboxypeptidase | 0.38 | AO353_18225 | | ATP-dependent RNA helicase HrpA | low | > 101 |
| Pseudomonas stutzeri RCH2 | 0.35 | Psest_1950 | | D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family | 0.35 | Psest_1339 | | ATP-dependent helicase HrpA | low | > 67 |
| Pseudomonas simiae WCS417 | 0.35 | PS417_20920 | | D-alanyl-D-alanine carboxypeptidase | 0.38 | PS417_20575 | | ATP-dependent helicase HrpA | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.34 | AO356_02595 | | D-alanyl-D-alanine carboxypeptidase | 0.38 | AO356_04280 | | ATP-dependent RNA helicase HrpA | low | > 104 |
| Dechlorosoma suillum PS | 0.34 | Dsui_0294 | | D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family | 0.54 | Dsui_1373 | | ATP-dependent helicase HrpA | low | > 51 |
| Pseudomonas sp. RS175 | 0.34 | PFR28_01057 | | D-alanyl-D-alanine carboxypeptidase DacC | 0.38 | PFR28_00739 | | hypothetical protein | low | > 88 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.34 | Psyr_2111 | | Peptidase S13, D-Ala-D-Ala carboxypeptidase C | 0.38 | Psyr_3831 | | ATP-dependent helicase HrpA | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.34 | Psyr_2111 | | Peptidase S13, D-Ala-D-Ala carboxypeptidase C | 0.38 | Psyr_3831 | | ATP-dependent helicase HrpA | low | > 86 |
| Pseudomonas fluorescens FW300-N2E2 | 0.34 | Pf6N2E2_2344 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.38 | Pf6N2E2_2694 | | ATP-dependent RNA helicase HrpA (EC 3.6.4.13) | low | > 103 |
| Pseudomonas fluorescens GW456-L13 | 0.33 | PfGW456L13_4091 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.39 | PfGW456L13_4467 | | ATP-dependent RNA helicase HrpA (EC 3.6.4.13) | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.33 | Pf1N1B4_3846 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.38 | Pf1N1B4_3388 | | ATP-dependent RNA helicase HrpA (EC 3.6.4.13) | low | > 87 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.32 | GFF2768 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.53 | GFF4301 | | macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. | low | > 90 |
| Castellaniella sp019104865 MT123 | 0.32 | ABCV34_RS15375 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.56 | ABCV34_RS02420 | | ATP-dependent RNA helicase HrpA | low | > 48 |
| Marinobacter adhaerens HP15 | 0.26 | HP15_829 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.38 | HP15_1863 | | RNA helicase, ATP-dependent DEAH box, HrpA type | low | > 73 |
| Erwinia tracheiphila SCR3 | 0.16 | LU632_RS21170 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | 0.40 | LU632_RS12630 | hrpA | ATP-dependent RNA helicase HrpA | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.15 | HER17_RS18335 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.41 | HER17_RS09660 | | ATP-dependent RNA helicase HrpA | low | > 75 |
| Dickeya dianthicola ME23 | 0.14 | DZA65_RS03175 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.41 | DZA65_RS12800 | | ATP-dependent RNA helicase HrpA | low | > 75 |
| Dickeya dadantii 3937 | 0.14 | DDA3937_RS03010 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.41 | DDA3937_RS12270 | | ATP-dependent RNA helicase HrpA | low | > 74 |
| Dickeya dianthicola 67-19 | 0.14 | HGI48_RS03180 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.41 | HGI48_RS12360 | | ATP-dependent RNA helicase HrpA | low | > 71 |
| Enterobacter asburiae PDN3 | 0.14 | EX28DRAFT_3234 | | D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family | 0.41 | EX28DRAFT_1357 | | RNA helicase HrpA | low | > 76 |
| Enterobacter sp. TBS_079 | 0.14 | MPMX20_04086 | | D-alanyl-D-alanine carboxypeptidase DacB | 0.41 | MPMX20_02189 | | hypothetical protein | low | > 85 |
| Rahnella sp. WP5 | 0.14 | EX31_RS08600 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.40 | EX31_RS06495 | | ATP-dependent RNA helicase HrpA | low | > 89 |
| Klebsiella michiganensis M5al | 0.14 | BWI76_RS25165 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.41 | BWI76_RS13165 | | ATP-dependent RNA helicase HrpA | low | > 92 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.13 | GFF2924 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.41 | GFF2632 | | ATP-dependent RNA helicase HrpA (EC 3.6.4.13) | low | > 78 |
| Escherichia coli BL21 | 0.13 | ECD_03047 | | D-alanyl-D-alanine carboxypeptidase | 0.41 | ECD_01368 | | putative ATP-dependent helicase | low | > 61 |
| Escherichia coli ECOR27 | 0.13 | NOLOHH_09840 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | 0.41 | NOLOHH_19390 | hrpA | ATP-dependent RNA helicase HrpA | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.13 | OHPLBJKB_00518 | | D-alanyl-D-alanine carboxypeptidase DacB | 0.41 | OHPLBJKB_02301 | | hypothetical protein | low | > 73 |
| Escherichia coli ECRC62 | 0.13 | BNILDI_01695 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | 0.41 | BNILDI_17845 | hrpA | ATP-dependent RNA helicase HrpA | low | > 75 |
| Escherichia fergusonii Becca | 0.13 | EFB2_00641 | | D-alanyl-D-alanine carboxypeptidase DacB | 0.41 | EFB2_02565 | | hypothetical protein | low | > 86 |
| Escherichia coli BW25113 | 0.13 | b3182 | dacB | D-alanyl-D-alanine carboxypeptidase (NCBI) | 0.41 | b1413 | hrpA | ATP-dependent helicase (RefSeq) | low | > 76 |
| Escherichia coli ECOR38 | 0.13 | HEPCGN_16915 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | 0.41 | HEPCGN_26110 | hrpA | ATP-dependent RNA helicase HrpA | low | > 87 |
| Escherichia coli Nissle 1917 | 0.13 | ECOLIN_RS18325 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.41 | ECOLIN_RS08180 | | ATP-dependent RNA helicase HrpA | — | — |
| Escherichia coli ECRC101 | 0.13 | MCAODC_08560 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | 0.41 | MCAODC_16205 | hrpA | ATP-dependent RNA helicase HrpA | low | > 87 |
| Escherichia coli ECRC102 | 0.13 | NIAGMN_15800 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | 0.41 | NIAGMN_25865 | hrpA | ATP-dependent RNA helicase HrpA | — | — |
| Escherichia coli ECRC99 | 0.13 | KEDOAH_10110 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | 0.41 | KEDOAH_26710 | hrpA | ATP-dependent RNA helicase HrpA | — | — |
| Escherichia coli ECRC100 | 0.13 | OKFHMN_18040 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | 0.41 | OKFHMN_01730 | hrpA | ATP-dependent RNA helicase HrpA | low | > 80 |
| Escherichia coli ECRC98 | 0.13 | JDDGAC_21665 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | 0.41 | JDDGAC_04220 | hrpA | ATP-dependent RNA helicase HrpA | low | > 86 |
| Serratia liquefaciens MT49 | 0.13 | IAI46_01875 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.41 | IAI46_13330 | | ATP-dependent RNA helicase HrpA | low | > 86 |
| Shewanella sp. ANA-3 | 0.12 | Shewana3_1985 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (RefSeq) | 0.41 | Shewana3_1897 | | ATP-dependent helicase HrpA (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.11 | SO2394 | dacB | penicillin-binding protein 4 (NCBI ptt file) | 0.41 | SO2229 | hrpA | ATP-dependent helicase HrpA (NCBI ptt file) | low | > 76 |
| Vibrio cholerae E7946 ATCC 55056 | 0.08 | CSW01_03320 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.40 | CSW01_06950 | | ATP-dependent RNA helicase HrpA | low | > 62 |
Not shown: 13 genomes with orthologs for HSERO_RS16870 only; 10 genomes with orthologs for HSERO_RS17315 only