| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS20770 | | MFS transporter | 1.0 | HSERO_RS04250 | | C4-dicarboxylate ABC transporter permease | 0.31 | 19 |
| Ralstonia sp. UNC404CL21Col | 0.70 | ABZR87_RS06820 | | cytochrome c oxidase subunit 3 | 0.27 | ABZR87_RS21100 | | TRAP transporter large permease | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.68 | RR42_RS01895 | | MFS transporter | 0.33 | RR42_RS34990 | | ABC transporter permease | low | > 128 |
| Castellaniella sp019104865 MT123 | 0.62 | ABCV34_RS13255 | | cytochrome c oxidase subunit 3 | 0.53 | ABCV34_RS05060 | | TRAP transporter large permease | low | > 48 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.62 | H281DRAFT_01990 | | cytochrome c oxidase subunit 3 | 0.26 | H281DRAFT_05326 | | TRAP transporter, DctM subunit | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.61 | BPHYT_RS02665 | | MFS transporter | 0.26 | BPHYT_RS24185 | | C4-dicarboxylate ABC transporter permease | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.61 | ABIE53_000678 | | cytochrome c oxidase subunit 3 | 0.26 | ABIE53_006500 | | tripartite ATP-independent transporter DctM subunit | low | > 113 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.61 | GFF693 | | Cytochrome c oxidase polypeptide III (EC 1.9.3.1) | 0.34 | GFF2972 | | TRAP-type C4-dicarboxylate transport system, large permease component | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.61 | Ac3H11_3888 | | Cytochrome c oxidase polypeptide III (EC 1.9.3.1) | 0.39 | Ac3H11_163 | | TRAP-type C4-dicarboxylate transport system, large permease component | low | > 79 |
| Variovorax sp. SCN45 | 0.61 | GFF2302 | | Cytochrome c oxidase polypeptide III (EC 1.9.3.1) | 0.39 | GFF6470 | | TRAP-type C4-dicarboxylate transport system, large permease component | low | > 127 |
| Variovorax sp. OAS795 | 0.60 | ABID97_RS23940 | | cytochrome c oxidase subunit 3 | 0.36 | ABID97_RS19635 | | TRAP transporter large permease | low | > 91 |
| Lysobacter sp. OAE881 | 0.53 | ABIE51_RS19190 | | cytochrome c oxidase subunit 3 | 0.25 | ABIE51_RS02840 | | TRAP transporter large permease | low | > 62 |
| Pseudomonas fluorescens SBW25 | 0.52 | PFLU_RS00305 | | cytochrome c oxidase subunit 3 | 0.50 | PFLU_RS16920 | | TRAP transporter large permease | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.52 | PFLU_RS00305 | | cytochrome c oxidase subunit 3 | 0.50 | PFLU_RS16920 | | TRAP transporter large permease | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.51 | AO356_11175 | | MFS transporter | 0.35 | AO356_23045 | | hypothetical protein | low | > 104 |
| Pseudomonas simiae WCS417 | 0.51 | PS417_00315 | | MFS transporter | 0.50 | PS417_14900 | | C4-dicarboxylate ABC transporter permease | low | > 88 |
| Pseudomonas sp. RS175 | 0.51 | PFR28_04688 | | Cytochrome c oxidase subunit 3 | 0.58 | PFR28_00121 | | C4-dicarboxylate TRAP transporter large permease protein DctM | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.51 | Pf6N2E2_4101 | | Cytochrome c oxidase polypeptide III (EC 1.9.3.1) | 0.34 | Pf6N2E2_485 | | TRAP-type C4-dicarboxylate transport system, large permease component | low | > 103 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.49 | Xcc-8004.4842.1 | | Cytochrome c oxidase polypeptide III (EC 1.9.3.1) | 0.24 | Xcc-8004.203.1 | | TRAP-type C4-dicarboxylate transport system, large permease component | low | > 74 |
| Shewanella loihica PV-4 | 0.48 | Shew_0122 | | cytochrome c oxidase, subunit III (RefSeq) | 0.44 | Shew_1444 | | dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component (from data) | low | > 60 |
| Alteromonas macleodii MIT1002 | 0.47 | MIT1002_04032 | | Cytochrome c oxidase subunit 3 | 0.31 | MIT1002_02428 | | Neu5Ac permease | low | > 70 |
| Pseudomonas stutzeri RCH2 | 0.47 | Psest_4329 | | Heme/copper-type cytochrome/quinol oxidase, subunit 3 | 0.56 | Psest_4270 | | TRAP transporter, DctM subunit | low | > 67 |
| Pseudomonas putida KT2440 | 0.45 | PP_0106 | | cytochrome c oxidase subunit 3 | 0.33 | PP_1167 | | D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) | low | > 96 |
| Marinobacter adhaerens HP15 | 0.45 | HP15_3774 | | cytochrome c oxidase subunit III | 0.28 | HP15_4074 | | C4-dicarboxylate transport system (permease large protein) | low | > 73 |
| Shewanella amazonensis SB2B | 0.44 | Sama_3486 | | cytochrome c oxidase subunit III (RefSeq) | 0.45 | Sama_2211 | | alpha-ketoglutarate TRAP transporter, large permease component (from data) | low | > 62 |
| Shewanella oneidensis MR-1 | 0.42 | SO4609 | | cytochrome c oxidase subunit III (NCBI ptt file) | 0.50 | SO3136 | dctM | C4-dicarboxylate transport protein (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.41 | Shewana3_3994 | | cytochrome c oxidase, subunit III (RefSeq) | 0.47 | Shewana3_1414 | | TRAP dicarboxylate transporter, DctM subunit (RefSeq) | low | > 73 |
| Rhizobium sp. OAE497 | 0.33 | ABIE40_RS04085 | | cytochrome c oxidase subunit 3 | 0.29 | ABIE40_RS25810 | | TRAP transporter large permease | low | > 107 |
| Agrobacterium fabrum C58 | 0.32 | Atu0771 | | cytochrome c oxidase subunit III | 0.31 | Atu2743 | | hypothetical protein | low | > 89 |
| Magnetospirillum magneticum AMB-1 | 0.32 | AMB_RS10950 | | cytochrome c oxidase subunit 3 | 0.80 | AMB_RS04550 | | C4-dicarboxylate ABC transporter permease | low | > 64 |
| Rhodopseudomonas palustris CGA009 | 0.31 | TX73_004310 | | cytochrome c oxidase subunit 3 | 0.76 | TX73_010560 | | TRAP transporter large permease subunit | low | > 86 |
| Dinoroseobacter shibae DFL-12 | 0.30 | Dshi_1144 | | cytochrome c oxidase subunit III (RefSeq) | 0.31 | Dshi_2753 | | TRAP dicarboxylate transporter, DctM subunit (RefSeq) | — | — |
| Sinorhizobium meliloti 1021 | 0.30 | SMc00013 | | cytochrome C oxidase subunit III transmembrane protein | 0.34 | SM_b21436 | | C4-dicarboxylate transport system, permease large protein transmembrane | low | > 103 |
| Azospirillum brasilense Sp245 | 0.30 | AZOBR_RS10570 | | cytochrome B562 | 0.82 | AZOBR_RS09595 | | C4-dicarboxylate ABC transporter permease | low | > 97 |
| Bosea sp. OAE506 | 0.28 | ABIE41_RS22970 | | cytochrome c oxidase subunit 3 | 0.33 | ABIE41_RS07820 | | TRAP transporter large permease | low | > 77 |
| Caulobacter crescentus NA1000 Δfur | 0.28 | CCNA_03513 | | cytochrome c oxidase subunit III coxC | 0.29 | CCNA_01515 | | C4-dicarboxylate transporter large subunit | low | > 67 |
| Caulobacter crescentus NA1000 | 0.28 | CCNA_03513 | | cytochrome c oxidase subunit III coxC | 0.29 | CCNA_01515 | | C4-dicarboxylate transporter large subunit | low | > 66 |
| Azospirillum sp. SherDot2 | 0.27 | MPMX19_00889 | | Cytochrome c oxidase subunit 3 | 0.78 | MPMX19_00661 | | C4-dicarboxylate TRAP transporter large permease protein DctM | low | > 112 |
| Phaeobacter inhibens DSM 17395 | 0.26 | PGA1_c06290 | | cytochrome c oxidase subunit 3 | 0.45 | PGA1_c20660 | | TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, large permease component (from data) | — | — |
Not shown: 16 genomes with orthologs for HSERO_RS20770 only; 21 genomes with orthologs for HSERO_RS04250 only