Conservation of cofitness between HSERO_RS09795 and HSERO_RS02135 in Herbaspirillum seropedicae SmR1

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS09795 carbon starvation protein A 1.0 HSERO_RS02135 phosphomethylpyrimidine kinase 0.24 20
Ralstonia sp. UNC404CL21Col 0.78 ABZR87_RS05220 carbon starvation CstA family protein 0.19 ABZR87_RS04830 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Cupriavidus basilensis FW507-4G11 0.77 RR42_RS20515 large component of pyruvate transporter (cstA-like) (from data) 0.15 RR42_RS01370 phosphomethylpyrimidine kinase — —
Ralstonia solanacearum PSI07 0.76 RPSI07_RS23840 carbon starvation protein A 0.19 RPSI07_RS23455 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Ralstonia solanacearum IBSBF1503 0.76 RALBFv3_RS09510 carbon starvation protein A 0.18 RALBFv3_RS09905 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Ralstonia solanacearum UW163 0.76 UW163_RS04070 carbon starvation protein A 0.18 UW163_RS03675 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Ralstonia solanacearum GMI1000 0.76 RS_RS00110 carbon starvation protein A 0.19 RS_RS00495 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.76 GFF3273 Carbon starvation protein A 0.21 GFF249 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) low > 90
Variovorax sp. OAS795 0.75 ABID97_RS22455 carbon starvation CstA family protein 0.18 ABID97_RS15330 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Azospirillum brasilense Sp245 0.73 AZOBR_RS18105 carbon starvation protein A 0.17 AZOBR_RS07045 phosphomethylpyrimidine kinase — —
Pseudomonas syringae pv. syringae B728a 0.71 Psyr_4273 Carbon starvation protein CstA 0.28 Psyr_4340 phosphomethylpyrimidine kinase, putative low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.71 Psyr_4273 Carbon starvation protein CstA 0.28 Psyr_4340 phosphomethylpyrimidine kinase, putative low > 86
Pseudomonas putida KT2440 0.71 PP_4641 putative transporter 0.29 PP_4782 Phosphomethylpyrimidine kinase low > 96
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_4835 Carbon starvation protein A 0.23 Pf1N1B4_2718 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) low > 87
Pseudomonas simiae WCS417 0.70 PS417_24295 carbon starvation protein A 0.29 PS417_24600 hydrogenase low > 88
Pseudomonas fluorescens FW300-N2C3 0.70 AO356_25680 carbon starvation protein A 0.28 AO356_15435 hydrogenase — —
Pseudomonas fluorescens SBW25-INTG 0.70 PFLU_RS26210 carbon starvation protein A 0.29 PFLU_RS26530 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.26 78
Pseudomonas fluorescens FW300-N2E3 0.70 AO353_25255 large subunit of pyruvate transporter (CstA) (from data) 0.28 AO353_06350 hydrogenase low > 101
Pseudomonas fluorescens SBW25 0.70 PFLU_RS26210 carbon starvation protein A 0.29 PFLU_RS26530 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.67 15
Pseudomonas sp. RS175 0.70 PFR28_01620 Pyruvate/proton symporter BtsT 0.26 PFR28_03843 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase — —
Pseudomonas fluorescens FW300-N2E2 0.70 Pf6N2E2_1294 Carbon starvation protein A 0.23 Pf6N2E2_5024 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) low > 103
Pseudomonas sp. S08-1 0.69 OH686_16210 Carbon starvation protein A 0.27 OH686_09185 Hydroxymethylpyrimidine phosphate kinase ThiD low > 80
Enterobacter sp. TBS_079 0.69 MPMX20_01255 Peptide transporter CstA 0.19 MPMX20_03076 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase low > 85
Pseudomonas fluorescens GW456-L13 0.69 PfGW456L13_1444 Carbon starvation protein A 0.28 PfGW456L13_1385 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) low > 87
Enterobacter asburiae PDN3 0.68 EX28DRAFT_2369 Carbon starvation protein, predicted membrane protein 0.18 EX28DRAFT_0469 hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 76
Escherichia coli ECRC101 0.68 MCAODC_26765 cstA pyruvate/proton symporter CstA 0.19 MCAODC_21085 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.68 OHPLBJKB_03108 Peptide transporter CstA 0.19 OHPLBJKB_01607 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase low > 73
Escherichia coli ECOR38 0.68 HEPCGN_00730 cstA pyruvate/proton symporter CstA 0.19 HEPCGN_02760 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 87
Escherichia coli ECRC98 0.68 JDDGAC_11195 cstA pyruvate/proton symporter CstA 0.19 JDDGAC_28185 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 86
Escherichia coli BW25113 0.68 b0598 cstA carbon starvation protein (NCBI) 0.19 b2103 thiD phosphomethylpyrimidine kinase (NCBI) 0.29 8
Escherichia coli ECRC102 0.68 NIAGMN_05605 cstA pyruvate/proton symporter CstA 0.19 NIAGMN_22020 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Escherichia fergusonii Becca 0.68 EFB2_03494 Peptide transporter CstA 0.19 EFB2_01754 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase low > 86
Escherichia coli ECRC100 0.68 OKFHMN_07550 cstA pyruvate/proton symporter CstA 0.19 OKFHMN_24075 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 80
Escherichia coli ECRC62 0.68 BNILDI_21935 cstA pyruvate/proton symporter CstA 0.19 BNILDI_14330 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 75
Escherichia coli ECRC99 0.68 KEDOAH_20420 cstA pyruvate/proton symporter CstA 0.19 KEDOAH_04075 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Escherichia coli Nissle 1917 0.68 ECOLIN_RS03280 pyruvate/proton symporter CstA 0.19 ECOLIN_RS12335 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Escherichia coli ECOR27 0.68 NOLOHH_23925 cstA pyruvate/proton symporter CstA 0.19 NOLOHH_15415 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 75
Klebsiella michiganensis M5al 0.68 BWI76_RS07775 carbon starvation protein A 0.18 BWI76_RS19375 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF4505 Carbon starvation protein A 0.18 GFF3834 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) low > 78
Pantoea sp. MT58 0.67 IAI47_09315 carbon starvation protein A 0.19 IAI47_06810 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 76
Rhodospirillum rubrum S1H 0.67 Rru_A0259 Carbon starvation protein CstA (NCBI) 0.23 Rru_A1102 Phosphomethylpyrimidine kinase (NCBI) — —
Xanthomonas campestris pv. campestris strain 8004 0.67 Xcc-8004.1756.1 Carbon starvation protein A 0.18 Xcc-8004.3091.1 hypothetical protein low > 74
Rahnella sp. WP5 0.67 EX31_RS17455 carbon starvation protein A 0.20 EX31_RS20390 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 89
Pectobacterium carotovorum WPP14 0.66 HER17_RS09410 carbon starvation protein A 0.20 HER17_RS06265 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 75
Serratia liquefaciens MT49 0.66 IAI46_13875 carbon starvation protein A 0.20 IAI46_19100 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 86
Brevundimonas sp. GW460-12-10-14-LB2 0.66 A4249_RS00760 carbon starvation CstA family protein 0.17 A4249_RS15985 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Dickeya dianthicola ME23 0.66 DZA65_RS13005 carbon starvation protein A 0.18 DZA65_RS16235 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 75
Acinetobacter radioresistens SK82 0.66 MPMX26_01068 Peptide transporter CstA 0.24 MPMX26_02438 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase — —
Dickeya dadantii 3937 0.65 DDA3937_RS12500 carbon starvation protein A 0.18 DDA3937_RS15335 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 74
Dickeya dianthicola 67-19 0.65 HGI48_RS12555 carbon starvation protein A 0.18 HGI48_RS15410 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.51 8
Lysobacter sp. OAE881 0.63 ABIE51_RS15525 carbon starvation CstA family protein 0.19 ABIE51_RS07970 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Escherichia coli BL21 0.62 ECD_04220 putative transporter 0.19 ECD_02031 hydroxy-methylpyrimidine kinase and hydroxy-phosphomethylpyrimidine kinase low > 61
Rhodanobacter sp. FW510-T8 0.60 OKGIIK_11475 cstA Carbon starvation protein CstA (peptide/pyruvate transporter) 0.19 OKGIIK_03835 Bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 52
Dyella japonica UNC79MFTsu3.2 0.60 ABZR86_RS19270 carbon starvation CstA family protein 0.22 ABZR86_RS00760 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Erwinia tracheiphila SCR3 0.60 LU632_RS20450 carbon starvation protein A 0.19 LU632_RS08590 thiD bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 74
Castellaniella sp019104865 MT123 0.50 ABCV34_RS10765 carbon starvation CstA family protein 0.18 ABCV34_RS14505 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Mycobacterium tuberculosis H37Rv 0.45 Rv3063 Probable carbon starvation protein A homolog CstA 0.14 Rv0422c Probable phosphomethylpyrimidine kinase ThiD (HMP-phosphate kinase) (HMP-P kinase) — —
Desulfovibrio vulgaris Miyazaki F 0.40 DvMF_1227 carbon starvation protein CstA (RefSeq) 0.22 DvMF_1376 phosphomethylpyrimidine kinase (RefSeq) — —
Azospirillum sp. SherDot2 0.31 MPMX19_06232 Pyruvate/proton symporter BtsT 0.19 MPMX19_06182 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.18 Echvi_0765 Carbon starvation protein, predicted membrane protein 0.22 Echvi_0215 phosphomethylpyrimidine kinase low > 79
Pseudomonas stutzeri RCH2 0.18 Psest_3894 Carbon starvation protein, predicted membrane protein 0.27 Psest_0537 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase low > 67

Not shown: 5 genomes with orthologs for HSERO_RS09795 only; 27 genomes with orthologs for HSERO_RS02135 only