Conservation of cofitness between HSERO_RS08590 and HSERO_RS01255 in Herbaspirillum seropedicae SmR1

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS08590 pseudouridine synthase 1.0 HSERO_RS01255 acyl-CoA dehydrogenase 0.31 14
Ralstonia sp. UNC404CL21Col 0.49 ABZR87_RS08605 pseudouridine synthase 0.78 ABZR87_RS07475 acyl-CoA dehydrogenase C-terminal domain-containing protein low > 80
Ralstonia solanacearum UW163 0.48 UW163_RS00960 16S rRNA pseudouridine(516) synthase 0.76 UW163_RS02070 acyl-CoA dehydrogenase — —
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS15880 pseudouridine synthase 0.79 RR42_RS02505 acyl-CoA dehydrogenase low > 128
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS12605 16S rRNA pseudouridine(516) synthase 0.76 RALBFv3_RS11515 acyl-CoA dehydrogenase low > 76
Ralstonia solanacearum PSI07 0.48 RPSI07_RS20655 16S rRNA pseudouridine(516) synthase 0.76 RPSI07_RS21695 acyl-CoA dehydrogenase low > 81
Ralstonia solanacearum GMI1000 0.48 RS_RS03390 16S rRNA pseudouridine(516) synthase 0.77 RS_RS02345 acyl-CoA dehydrogenase low > 80
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS03150 16S rRNA pseudouridine(516) synthase 0.75 QEN71_RS02060 acyl-CoA dehydrogenase C-terminal domain-containing protein low > 153
Paraburkholderia graminis OAS925 0.46 ABIE53_003276 16S rRNA pseudouridine516 synthase 0.74 ABIE53_000783 alkylation response protein AidB-like acyl-CoA dehydrogenase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_04053 ribosomal small subunit pseudouridine synthase A (EC 5.4.99.-) 0.75 H281DRAFT_04624 hypothetical protein low > 103
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS15560 pseudouridine synthase 0.74 BPHYT_RS03220 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) low > 109
Acinetobacter radioresistens SK82 0.44 MPMX26_01203 Ribosomal small subunit pseudouridine synthase A 0.55 MPMX26_02628 3-methylmercaptopropionyl-CoA dehydrogenase low > 36
Variovorax sp. OAS795 0.43 ABID97_RS09900 16S rRNA pseudouridine(516) synthase 0.72 ABID97_RS05855 acyl-CoA dehydrogenase C-terminal domain-containing protein low > 91
Variovorax sp. SCN45 0.42 GFF3076 SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19) 0.72 GFF4610 Long chain acyl-CoA dehydrogenase [fadN-fadA-fadE operon] (EC 1.3.8.8) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF5277 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.71 GFF412 Acyl-CoA dehydrogenase (EC 1.3.8.7) low > 90
Caulobacter crescentus NA1000 Δfur 0.27 CCNA_01915 ribosomal small subunit pseudouridine synthase A 0.50 CCNA_00078 acyl-CoA dehydrogenase low > 67
Caulobacter crescentus NA1000 0.27 CCNA_01915 ribosomal small subunit pseudouridine synthase A 0.50 CCNA_00078 acyl-CoA dehydrogenase low > 66
Rhodanobacter denitrificans FW104-10B01 0.27 LRK54_RS15935 rRNA pseudouridine synthase 0.49 LRK54_RS12455 acyl-CoA dehydrogenase C-terminal domain-containing protein low > 59
Rhodanobacter denitrificans MT42 0.27 LRK55_RS15690 pseudouridine synthase 0.49 LRK55_RS12195 acyl-CoA dehydrogenase C-terminal domain-containing protein low > 63
Rhodanobacter sp. FW510-T8 0.27 OKGIIK_09050 Pseudouridine synthase 0.48 OKGIIK_02065 acyl-CoA dehydrogenase low > 52
Shewanella sp. ANA-3 0.26 Shewana3_0760 ribosomal small subunit pseudouridine synthase A (RefSeq) 0.51 Shewana3_2552 acyl-CoA dehydrogenase domain-containing protein (RefSeq) low > 73
Shewanella amazonensis SB2B 0.25 Sama_2614 pseudouridine synthase, Rsu (RefSeq) 0.36 Sama_1743 Acyl-CoA dehydrogenase (EC 1.3.8.-) (from data) low > 62
Xanthomonas campestris pv. campestris strain 8004 0.25 Xcc-8004.4611.1 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.52 Xcc-8004.2104.1 Acyl-CoA dehydrogenase (EC 1.3.8.7) low > 74
Marinobacter adhaerens HP15 0.24 HP15_3359 pseudouridine synthase, Rsu 0.57 HP15_2479 acyl-CoA dehydrogenase family protein low > 73
Lysobacter sp. OAE881 0.24 ABIE51_RS18480 pseudouridine synthase 0.49 ABIE51_RS15170 acyl-CoA dehydrogenase C-terminal domain-containing protein low > 62
Shewanella loihica PV-4 0.23 Shew_2975 pseudouridine synthase (RefSeq) 0.50 Shew_2164 acyl-CoA dehydrogenase domain-containing protein (RefSeq) low > 60
Dyella japonica UNC79MFTsu3.2 0.23 ABZR86_RS00325 16S rRNA pseudouridine(516) synthase 0.49 ABZR86_RS19440 acyl-CoA dehydrogenase C-terminal domain-containing protein low > 74
Brevundimonas sp. GW460-12-10-14-LB2 0.22 A4249_RS11350 pseudouridine synthase 0.49 A4249_RS00375 acyl-CoA dehydrogenase C-terminal domain-containing protein low > 48
Rhizobium sp. OAE497 0.21 ABIE40_RS15330 pseudouridine synthase 0.51 ABIE40_RS02580 acyl-CoA dehydrogenase C-terminal domain-containing protein low > 107
Pseudomonas fluorescens FW300-N1B4 0.20 Pf1N1B4_3297 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.57 Pf1N1B4_2493 Acyl-CoA dehydrogenase (EC 1.3.8.7) low > 87
Pseudomonas fluorescens FW300-N2E3 0.19 AO353_17535 16S rRNA pseudouridine(516) synthase 0.56 AO353_07495 acyl-CoA dehydrogenase low > 101
Pseudomonas fluorescens FW300-N2C3 0.19 AO356_04690 16S rRNA pseudouridine(516) synthase 0.56 AO356_14165 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) low > 104
Pseudomonas syringae pv. syringae B728a ΔmexB 0.19 Psyr_3981 ribosomal small subunit pseudouridine synthase A 0.56 Psyr_4681 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region low > 86
Pseudomonas syringae pv. syringae B728a 0.19 Psyr_3981 ribosomal small subunit pseudouridine synthase A 0.56 Psyr_4681 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region low > 86
Pseudomonas stutzeri RCH2 0.19 Psest_3049 pseudouridine synthase 0.57 Psest_0417 Acyl-CoA dehydrogenases low > 67
Pseudomonas putida KT2440 0.19 PP_1409 ribosomal small subunit pseudouridine synthase A 0.57 PP_0368 putative Acyl-CoA dehydrogenase low > 96
Pseudomonas sp. RS175 0.19 PFR28_00665 Ribosomal small subunit pseudouridine synthase A 0.56 PFR28_04096 3-methylmercaptopropionyl-CoA dehydrogenase low > 88
Pseudomonas fluorescens FW300-N2E2 0.19 Pf6N2E2_2785 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.56 Pf6N2E2_4766 Acyl-CoA dehydrogenase (EC 1.3.8.7) low > 103
Pseudomonas sp. S08-1 0.18 OH686_05950 SSU rRNA pseudouridine(516) synthase 0.55 OH686_10320 Long chain acyl-CoA dehydrogenase [fadN-fadA-fadE operon] low > 80
Pseudomonas fluorescens GW456-L13 0.17 PfGW456L13_4535 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.57 PfGW456L13_1153 Acyl-CoA dehydrogenase (EC 1.3.8.7) low > 87
Pseudomonas simiae WCS417 0.17 PS417_07010 pseudouridine synthase 0.56 PS417_25975 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) low > 88
Pseudomonas fluorescens SBW25 0.17 PFLU_RS07085 pseudouridine synthase 0.57 PFLU_RS27620 acyl-CoA dehydrogenase low > 109
Pseudomonas fluorescens SBW25-INTG 0.17 PFLU_RS07085 pseudouridine synthase 0.57 PFLU_RS27620 acyl-CoA dehydrogenase low > 109

Not shown: 29 genomes with orthologs for HSERO_RS08590 only; 16 genomes with orthologs for HSERO_RS01255 only