| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Phocaeicola vulgatus CL09T03C04 | 1.0 | HMPREF1058_RS03380 | | DegT/DnrJ/EryC1/StrS family aminotransferase | 1.0 | HMPREF1058_RS02780 | | sigma-54-dependent Fis family transcriptional regulator | 0.30 | 19 |
| Phocaeicola dorei CL03T12C01 | 0.91 | ABI39_RS16735 | | DegT/DnrJ/EryC1/StrS family aminotransferase | 0.99 | ABI39_RS02120 | | sigma-54-dependent Fis family transcriptional regulator | low | > 72 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.79 | BT3376 | | nucleotide sugar transaminase (NCBI ptt file) | 0.70 | BT3801 | | rteB, two-component system response regulator (NCBI ptt file) | low | > 81 |
| Pseudomonas sp. SVBP6 | 0.59 | COO64_RS21480 | vioA | dTDP-4-amino-4,6-dideoxy-D-glucose aminotransferase VioA | 0.32 | COO64_RS15090 | | sigma-54 dependent transcriptional regulator | low | > 93 |
| Pseudomonas fluorescens FW300-N2C3 | 0.59 | AO356_03965 | | aminotransferase | 0.32 | AO356_16075 | | Fis family transcriptional regulator | low | > 104 |
| Pectobacterium carotovorum WPP14 | 0.58 | HER17_RS08320 | | DegT/DnrJ/EryC1/StrS family aminotransferase | 0.33 | HER17_RS05925 | | two-component system response regulator GlrR | 0.60 | 49 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.57 | H281DRAFT_02433 | | dTDP-4-amino-4,6-dideoxygalactose transaminase | 0.33 | H281DRAFT_01779 | | DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains | low | > 103 |
| Escherichia coli ECOR38 | 0.56 | HEPCGN_03130 | vioA | dTDP-4-amino-4,6-dideoxy-D-glucose aminotransferase VioA | 0.36 | HEPCGN_11960 | zraR | sigma-54-dependent response regulator transcription factor ZraR | — | — |
| Escherichia coli BL21 | 0.56 | ECD_01942 | | VioA, involved in dTDP-N-acetylviosamine synthesis | 0.36 | ECD_03881 | | fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein | — | — |
| Erwinia amylovora T8 | 0.55 | OLJFJH_09990 | | aminotransferase | 0.32 | OLJFJH_10330 | | two-component system response regulator QseF/GlrR | low | > 58 |
| Dickeya dadantii 3937 | 0.55 | DDA3937_RS13325 | | DegT/DnrJ/EryC1/StrS family aminotransferase | 0.33 | DDA3937_RS15640 | | two-component system response regulator GlrR | low | > 74 |
| Dickeya dianthicola 67-19 | 0.55 | HGI48_RS13375 | | DegT/DnrJ/EryC1/StrS family aminotransferase | 0.33 | HGI48_RS15735 | | two-component system response regulator GlrR | low | > 71 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.54 | Xcc-8004.2801.1 | | Aminotransferase, DegT/DnrJ/EryC1/StrS family | 0.31 | Xcc-8004.252.1 | | Nitrogen regulation protein NtrC | low | > 74 |
| Dickeya dianthicola ME23 | 0.54 | DZA65_RS13860 | | DegT/DnrJ/EryC1/StrS family aminotransferase | 0.33 | DZA65_RS16815 | | two-component system response regulator GlrR | low | > 75 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.39 | ABZR88_RS08965 | | DegT/DnrJ/EryC1/StrS aminotransferase family protein | 0.44 | ABZR88_RS00090 | | sigma-54 dependent transcriptional regulator | low | > 71 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.39 | CA265_RS07920 | | aminotransferase DegT | 0.46 | CA265_RS19085 | | sigma-54-dependent Fis family transcriptional regulator | low | > 88 |
| Shewanella oneidensis MR-1 | 0.31 | SO3185 | | polysaccharide biosynthesis protein (NCBI ptt file) | 0.31 | SO4718 | | sigma-54 dependent response regulator (NCBI ptt file) | low | > 76 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.26 | DVU3010 | lpsC | aminotransferase, DegT/DnrJ/EryC1/StrS family (TIGR) | 0.34 | DVU2394 | ntrC1 | sigma-54 dependent transcriptional regulator/response regulator (TIGR) | low | > 55 |
| Rhodanobacter sp. FW510-T8 | 0.22 | OKGIIK_10755 | | UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase | 0.31 | OKGIIK_01730 | atoC | sigma-54-dependent Fis family transcriptional regulator | low | > 52 |
| Herbaspirillum seropedicae SmR1 | 0.22 | HSERO_RS10435 | | aminotransferase DegT | 0.32 | HSERO_RS23170 | | ATPase AAA | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.22 | AO353_08725 | | aminotransferase DegT | 0.35 | AO353_16225 | | Fis family transcriptional regulator | low | > 101 |
| Pseudomonas lactucae CFBP13502 | 0.21 | GEMAOFIL_05587 | | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | 0.35 | GEMAOFIL_01292 | | Regulatory protein AtoC | low | > 93 |
| Pseudomonas fluorescens SBW25-INTG | 0.21 | PFLU_RS28905 | | DegT/DnrJ/EryC1/StrS aminotransferase family protein | 0.35 | PFLU_RS05610 | | sigma-54-dependent Fis family transcriptional regulator | low | > 109 |
| Pseudomonas simiae WCS417 | 0.21 | PS417_27245 | | aminotransferase DegT | 0.35 | PS417_05525 | | Fis family transcriptional regulator | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.21 | PFLU_RS28905 | | DegT/DnrJ/EryC1/StrS aminotransferase family protein | 0.35 | PFLU_RS05610 | | sigma-54-dependent Fis family transcriptional regulator | 0.78 | 38 |
| Pseudomonas fluorescens GW456-L13 | 0.19 | PfGW456L13_4375 | | perosamine synthetase | 0.31 | PfGW456L13_1524 | | Two-component sensor CbrB: intrcellular carbon:nitrogen balance | low | > 87 |
| Escherichia coli ECRC102 | 0.19 | NIAGMN_22375 | rfbE | GDP-perosamine synthase RfbE/PerA | 0.35 | NIAGMN_11070 | zraR | sigma-54-dependent response regulator transcription factor ZraR | — | — |
| Magnetospirillum magneticum AMB-1 | 0.19 | AMB_RS00640 | | DegT/DnrJ/EryC1/StrS family aminotransferase | 0.31 | AMB_RS09665 | | sigma-54-dependent Fis family transcriptional regulator | — | — |
| Escherichia coli ECRC98 | 0.19 | JDDGAC_28540 | rfbE | GDP-perosamine synthase RfbE/PerA | 0.35 | JDDGAC_16945 | zraR | sigma-54-dependent response regulator transcription factor ZraR | low | > 87 |
| Escherichia coli ECRC100 | 0.19 | OKFHMN_24430 | rfbE | GDP-perosamine synthase RfbE/PerA | 0.35 | OKFHMN_13320 | zraR | sigma-54-dependent response regulator transcription factor ZraR | low | > 79 |
| Escherichia coli ECRC101 | 0.19 | MCAODC_20510 | rfbE | GDP-perosamine synthase RfbE/PerA | 0.35 | MCAODC_03820 | zraR | sigma-54-dependent response regulator transcription factor ZraR | — | — |
| Escherichia coli ECRC99 | 0.19 | KEDOAH_03720 | rfbE | GDP-perosamine synthase RfbE/PerA | 0.35 | KEDOAH_14840 | zraR | sigma-54-dependent response regulator transcription factor ZraR | — | — |
| Parabacteroides merdae CL09T00C40 | 0.19 | HMPREF1078_RS07315 | | DegT/DnrJ/EryC1/StrS family aminotransferase | 0.60 | HMPREF1078_RS07540 | | sigma-54 dependent transcriptional regulator | low | > 61 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.19 | CA264_12335 | | pyridoxal phosphate-dependent aminotransferase | 0.50 | CA264_16520 | | DNA-binding response regulator | low | > 74 |
| Rhodanobacter denitrificans FW104-10B01 | 0.18 | LRK54_RS05160 | | DegT/DnrJ/EryC1/StrS family aminotransferase | 0.32 | LRK54_RS05020 | | sigma-54 dependent transcriptional regulator | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.18 | LRK55_RS04940 | | DegT/DnrJ/EryC1/StrS family aminotransferase | 0.32 | LRK55_RS04800 | | sigma-54 dependent transcriptional regulator | low | > 63 |
| Xanthobacter sp. DMC5 | 0.18 | GFF1738 | | UDP-2-acetamido-2-deoxy-3-oxo-D-glucuronate aminotransferase | 0.35 | GFF4834 | | Regulatory protein AtoC | — | — |
| Serratia liquefaciens MT49 | 0.18 | IAI46_11015 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | 0.33 | IAI46_19460 | | two-component system response regulator GlrR | low | > 86 |
| Pantoea sp. MT58 | 0.18 | IAI47_21625 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | 0.33 | IAI47_04945 | | two-component system response regulator GlrR | low | > 76 |
| Pantoea agglomerans CFBP13505 P0401 | 0.18 | PagCFBP13505_RS12240 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | 0.33 | PagCFBP13505_RS14835 | | two-component system response regulator GlrR | low | > 74 |
| Klebsiella michiganensis M5al | 0.18 | BWI76_RS26485 | | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | 0.35 | BWI76_RS01605 | | transcriptional regulatory protein ZraR | low | > 92 |
| Klebsiella pneumoniae MKP103 | 0.18 | KDGMDA_07345 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | 0.36 | KDGMDA_10090 | | sigma-54-dependent response regulator transcription factor ZraR | low | > 95 |
| Sphingomonas koreensis DSMZ 15582 | 0.18 | Ga0059261_3110 | | Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis | 0.29 | Ga0059261_1363 | | PEP-CTERM-box response regulator transcription factor | — | — |
| Pseudomonas sp. RS175 | 0.17 | PFR28_00930 | | GDP-perosamine synthase | 0.32 | PFR28_03718 | | Transcriptional regulatory protein ZraR | low | > 88 |
| Rhodanobacter sp000427505 FW510-R12 | 0.17 | LRK53_RS00475 | | DegT/DnrJ/EryC1/StrS family aminotransferase | 0.32 | LRK53_RS04990 | | sigma-54 dependent transcriptional regulator | low | > 59 |
| Escherichia coli Nissle 1917 | 0.17 | ECOLIN_RS13125 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | 0.36 | ECOLIN_RS23090 | | sigma-54-dependent response regulator transcription factor ZraR | low | > 55 |
| Escherichia coli BW25113 | 0.17 | b2253 | arnB | uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent (RefSeq) | 0.36 | b4004 | zraR | fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein (NCBI) | low | > 76 |
| Escherichia coli ECRC62 | 0.17 | BNILDI_13535 | arnB | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | 0.36 | BNILDI_06055 | zraR | sigma-54-dependent response regulator transcription factor ZraR | low | > 75 |
| Escherichia fergusonii Becca | 0.17 | EFB2_01603 | | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | 0.36 | EFB2_04606 | | Transcriptional regulatory protein ZraR | low | > 86 |
| Rhodospirillum rubrum S1H | 0.17 | Rru_A2746 | | DegT/DnrJ/EryC1/StrS aminotransferase (NCBI) | 0.32 | Rru_A3104 | | Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) | low | > 58 |
| Escherichia coli ECOR27 | 0.17 | NOLOHH_14620 | arnB | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | 0.36 | NOLOHH_05465 | zraR | sigma-54-dependent response regulator transcription factor ZraR | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.17 | OHPLBJKB_01458 | | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | 0.36 | OHPLBJKB_04045 | | Transcriptional regulatory protein ZraR | low | > 74 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.16 | Echvi_3862 | | Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis | 0.47 | Echvi_4656 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | 0.25 | 34 |
| Methylophilus sp. DMC18 | 0.16 | GFF528 | | dTDP-3-amino-3,4,6-trideoxy-alpha-D-glucose transaminase | 0.31 | GFF1277 | | Regulatory protein AtoC | low | > 43 |
| Cellulophaga baltica 18 | 0.16 | M666_RS07415 | | DegT/DnrJ/EryC1/StrS family aminotransferase | 0.52 | M666_RS03195 | | sigma-54 dependent transcriptional regulator | low | > 67 |
| Pseudomonas sp. BP01 | 0.16 | JOY50_RS13140 | | DegT/DnrJ/EryC1/StrS aminotransferase family protein | 0.32 | JOY50_RS27675 | | sigma-54 dependent transcriptional regulator | low | > 84 |
| Azospirillum brasilense Sp245 | 0.16 | AZOBR_RS33605 | | erythromycin biosynthesis sensory transduction protein eryC1 | 0.31 | AZOBR_RS01060 | | ATPase AAA | low | > 97 |
| Dyella japonica UNC79MFTsu3.2 | 0.15 | ABZR86_RS18520 | | DegT/DnrJ/EryC1/StrS family aminotransferase | 0.32 | ABZR86_RS11070 | | sigma-54 dependent transcriptional regulator | low | > 74 |
| Acinetobacter radioresistens SK82 | 0.15 | MPMX26_00061 | | GDP-perosamine synthase | 0.31 | MPMX26_00162 | | Regulatory protein AtoC | low | > 36 |
| Pseudomonas fluorescens FW300-N1B4 | 0.14 | Pf1N1B4_3586 | | DegT/DnrJ/EryC1/StrS aminotransferase | 0.32 | Pf1N1B4_2858 | | Two-component sensor CbrB: intrcellular carbon:nitrogen balance | low | > 87 |
| Rhodopseudomonas palustris CGA009 | 0.14 | TX73_020615 | | DegT/DnrJ/EryC1/StrS family aminotransferase | 0.28 | TX73_005040 | | sigma-54 dependent transcriptional regulator | — | — |
| Alteromonas macleodii MIT1002 | 0.14 | MIT1002_01078 | | UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase | 0.33 | MIT1002_01326 | | Quorum-sensing regulator protein F | low | > 70 |
| Pseudomonas fluorescens FW300-N2E2 | 0.13 | Pf6N2E2_2610 | | Bacillosamine/Legionaminic acid biosynthesis aminotransferase PglE; 4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase | 0.32 | Pf6N2E2_5156 | | Two-component sensor CbrB: intrcellular carbon:nitrogen balance | low | > 103 |
| Pseudomonas sp. DMC3 | 0.13 | GFF2433 | | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | 0.32 | GFF4030 | | Transcriptional regulatory protein ZraR | low | > 89 |
| Acinetobacter baumannii LAC-4 | 0.12 | RR41_RS18630 | | LegC family aminotransferase | 0.30 | RR41_RS17800 | | sigma-54 dependent transcriptional regulator | — | — |
Not shown: 35 genomes with orthologs for HMPREF1058_RS03380 only; 10 genomes with orthologs for HMPREF1058_RS02780 only