| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pectobacterium carotovorum WPP14 | 1.0 | HER17_RS19675 | | TRAP transporter substrate-binding protein | 1.0 | HER17_RS21315 | | FAD-binding oxidoreductase | 0.66 | 1 |
| Rahnella sp. WP5 | 0.80 | EX31_RS08010 | | TRAP transporter substrate-binding protein | 0.70 | EX31_RS15580 | | FAD-dependent oxidoreductase | low | > 89 |
| Pantoea sp. MT58 | 0.66 | IAI47_03230 | | TRAP transporter substrate-binding protein | 0.12 | IAI47_07595 | | FAD-binding oxidoreductase | low | > 76 |
| Pseudomonas putida KT2440 | 0.50 | PP_1169 | | D-glucuronate / D-galacturonate TRAP transporter, solute receptor component (from data) | 0.30 | PP_5370 | | Oxidoreductase-related protein | low | > 96 |
| Pseudomonas stutzeri RCH2 | 0.50 | Psest_0363 | | tripartite ATP-independent periplasmic transporter solute receptor, DctP family | 0.12 | Psest_3795 | | Glycine/D-amino acid oxidases (deaminating) | low | > 67 |
| Pseudomonas fluorescens FW300-N2E2 | 0.49 | Pf6N2E2_487 | | TRAP-type C4-dicarboxylate transport system, periplasmic component | 0.13 | Pf6N2E2_4388 | | Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) | low | > 103 |
| Pseudomonas simiae WCS417 | 0.49 | PS417_17370 | | C4-dicarboxylate ABC transporter | 0.13 | PS417_27720 | | FAD-dependent oxidoreductase | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.49 | PFLU_RS19295 | | TRAP transporter substrate-binding protein | 0.13 | PFLU_RS29395 | | FAD-binding oxidoreductase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.49 | PFLU_RS19295 | | TRAP transporter substrate-binding protein | 0.13 | PFLU_RS29395 | | FAD-binding oxidoreductase | low | > 109 |
| Pseudomonas sp. RS175 | 0.48 | PFR28_02438 | | Solute-binding protein | 0.12 | PFR28_02805 | | Gamma-glutamylputrescine oxidoreductase | low | > 88 |
| Pseudomonas syringae pv. syringae B728a | 0.47 | Psyr_0900 | | TRAP dicarboxylate transporter- DctP subunit | 0.12 | Psyr_2427 | | gamma-glutamylputrescine oxidase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.47 | Psyr_0900 | | TRAP dicarboxylate transporter- DctP subunit | 0.12 | Psyr_2427 | | gamma-glutamylputrescine oxidase | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.47 | AO356_23055 | | C4-dicarboxylate ABC transporter | 0.23 | AO356_09265 | | oxidoreductase | low | > 104 |
| Azospirillum brasilense Sp245 | 0.36 | AZOBR_RS30130 | | C4-dicarboxylate ABC transporter | 0.13 | AZOBR_RS25655 | | oxidoreductase | low | > 97 |
| Bosea sp. OAE506 | 0.35 | ABIE41_RS07830 | | TRAP transporter substrate-binding protein | 0.12 | ABIE41_RS12125 | | FAD-binding oxidoreductase | low | > 77 |
| Agrobacterium fabrum C58 | 0.35 | Atu3137 | | C4-dicarboxylate-binding protein | 0.23 | Atu3958 | | oxidoreductase | low | > 89 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.35 | GFF797 | | TRAP-type C4-dicarboxylate transport system, periplasmic component | 0.12 | GFF2043 | | Glycine/D-amino acid oxidase (deaminating) in putrescine utilization cluster | low | > 90 |
| Sinorhizobium meliloti 1021 | 0.34 | SM_b21353 | | periplasmic C4-dicarboxylate transport protein | 0.12 | SMc00761 | | oxidoreductase | 0.35 | 14 |
| Variovorax sp. OAS795 | 0.33 | ABID97_RS10340 | | TRAP transporter substrate-binding protein | 0.12 | ABID97_RS28585 | | FAD-binding oxidoreductase | low | > 91 |
| Azospirillum sp. SherDot2 | 0.33 | MPMX19_05801 | | Solute-binding protein | 0.23 | MPMX19_03255 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | low | > 112 |
| Paraburkholderia graminis OAS925 | 0.30 | ABIE53_006502 | | tripartite ATP-independent transporter DctP family solute receptor | 0.13 | ABIE53_004072 | | gamma-glutamylputrescine oxidase | low | > 113 |
| Caulobacter crescentus NA1000 Δfur | 0.30 | CCNA_01513 | | C4-dicarboxylate-binding protein | 0.12 | CCNA_03229 | | FAD dependent oxidoreductase | low | > 67 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.30 | H281DRAFT_05324 | | tripartite ATP-independent transporter solute receptor, DctP family | 0.28 | H281DRAFT_00992 | | Glycine/D-amino acid oxidase (deaminating) | low | > 103 |
| Caulobacter crescentus NA1000 | 0.30 | CCNA_01513 | | C4-dicarboxylate-binding protein | 0.12 | CCNA_03229 | | FAD dependent oxidoreductase | low | > 66 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.30 | OHPLBJKB_03838 | | Solute-binding protein | 0.10 | OHPLBJKB_02381 | | Gamma-glutamylputrescine oxidoreductase | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.30 | MIT1002_02426 | | Extracytoplasmic solute receptor protein YiaO | 0.10 | MIT1002_03149 | | Gamma-glutamylputrescine oxidoreductase | low | > 70 |
| Escherichia coli ECRC62 | 0.29 | BNILDI_07130 | | Bacterial extracellular solute-binding protein, family 7 | 0.10 | BNILDI_18260 | puuB | gamma-glutamylputrescine oxidase | low | > 75 |
| Burkholderia phytofirmans PsJN | 0.29 | BPHYT_RS24175 | | C4-dicarboxylate ABC transporter | 0.12 | BPHYT_RS23120 | | FAD-dependent oxidoreductase | low | > 109 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.29 | GFF3130 | | TRAP-type C4-dicarboxylate transport system, periplasmic component | 0.08 | GFF3084 | | FIG00553873: hypothetical protein | low | > 78 |
| Klebsiella michiganensis M5al | 0.29 | BWI76_RS24125 | | hypothetical protein | 0.52 | BWI76_RS14710 | | FAD-dependent oxidoreductase | low | > 92 |
| Variovorax sp. SCN45 | 0.28 | GFF2918 | | TRAP-type C4-dicarboxylate transport system, periplasmic component | 0.13 | GFF6149 | | FAD-dependent oxidoreductase | low | > 127 |
| Ralstonia sp. UNC404CL21Col | 0.28 | ABZR87_RS21090 | | TRAP transporter substrate-binding protein | 0.12 | ABZR87_RS05800 | | FAD-binding oxidoreductase | low | > 80 |
| Lysobacter sp. OAE881 | 0.28 | ABIE51_RS02850 | | TRAP transporter substrate-binding protein | 0.13 | ABIE51_RS09380 | | FAD-binding oxidoreductase | low | > 62 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.27 | Xcc-8004.201.1 | | TRAP-type C4-dicarboxylate transport system, periplasmic component | 0.13 | Xcc-8004.2201.1 | | glutamine synthetase family protein | low | > 74 |
| Serratia liquefaciens MT49 | 0.27 | IAI46_00375 | | TRAP transporter substrate-binding protein | 0.10 | IAI46_10540 | | FAD-binding oxidoreductase | low | > 86 |
| Escherichia coli ECOR38 | 0.26 | HEPCGN_18535 | | Bacterial extracellular solute-binding protein, family 7 | 0.10 | HEPCGN_25775 | puuB | gamma-glutamylputrescine oxidase | low | > 87 |
| Escherichia coli ECOR27 | 0.26 | NOLOHH_11100 | | Bacterial extracellular solute-binding protein, family 7 | 0.10 | NOLOHH_20110 | puuB | gamma-glutamylputrescine oxidase | low | > 75 |
| Escherichia coli BL21 | 0.24 | ECD_03431 | | 2,3-diketo-L-gulonate-binding periplasmic protein | 0.10 | ECD_01278 | | gamma-glutamylputrescine oxidoreductase | low | > 61 |
| Escherichia coli BW25113 | 0.24 | b3579 | yiaO | predicted transporter (NCBI) | 0.10 | b1301 | puuB | gamma-Glu-putrescine oxidase, FAD/NAD(P)-binding (NCBI) | low | > 76 |
| Castellaniella sp019104865 MT123 | 0.23 | ABCV34_RS11540 | | TRAP transporter substrate-binding protein | 0.21 | ABCV34_RS06250 | | FAD-binding oxidoreductase | low | > 48 |
| Herbaspirillum seropedicae SmR1 | 0.21 | HSERO_RS04240 | | C4-dicarboxylate ABC transporter | 0.09 | HSERO_RS05840 | | FAD-dependent oxidoreductase | low | > 78 |
| Rhodospirillum rubrum S1H | 0.20 | Rru_A3678 | | TRAP dicarboxylate transporter- DctP subunit (NCBI) | 0.11 | Rru_A2874 | | FAD dependent oxidoreductase (NCBI) | low | > 58 |
| Dinoroseobacter shibae DFL-12 | 0.19 | Dshi_3326 | | TRAP dicarboxylate transporter, DctP subunit (RefSeq) | 0.10 | Dshi_2227 | | FAD dependent oxidoreductase (RefSeq) | low | > 64 |
| Cupriavidus basilensis FW507-4G11 | 0.18 | RR42_RS10600 | | C4-dicarboxylate ABC transporter substrate-binding protein | 0.16 | RR42_RS24610 | | FAD-dependent oxidoreductase | low | > 128 |
| Rhodopseudomonas palustris CGA009 | 0.18 | TX73_010550 | | TRAP transporter substrate-binding protein | 0.10 | TX73_013660 | | FAD-dependent oxidoreductase | low | > 86 |
| Rhizobium sp. OAE497 | 0.17 | ABIE40_RS25820 | | sialic acid TRAP transporter substrate-binding protein SiaP | 0.13 | ABIE40_RS03205 | | FAD-binding oxidoreductase | low | > 107 |
| Shewanella amazonensis SB2B | 0.15 | Sama_2209 | | alpha-ketoglutarate TRAP transporter, solute receptor component (from data) | 0.12 | Sama_2077 | | oxidoreductase (RefSeq) | low | > 62 |
| Phaeobacter inhibens DSM 17395 | 0.15 | PGA1_c20680 | | TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, substrate-binding component (from data) | 0.13 | PGA1_78p00350 | | FAD dependent oxidoreductase | — | — |
| Pseudomonas sp. S08-1 | 0.11 | OH686_16140 | | TRAP-type transporter, substrate-binding protein | 0.14 | OH686_03420 | | Glycine/D-amino acid (deaminating) | low | > 80 |
Not shown: 11 genomes with orthologs for HER17_RS19675 only; 26 genomes with orthologs for HER17_RS21315 only