| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pectobacterium carotovorum WPP14 | 1.0 | HER17_RS19675 | | TRAP transporter substrate-binding protein | 1.0 | HER17_RS12920 | | extracellular solute-binding protein | 0.53 | 19 |
| Rahnella sp. WP5 | 0.80 | EX31_RS08010 | | TRAP transporter substrate-binding protein | 0.66 | EX31_RS19130 | | ABC transporter substrate-binding protein | low | > 89 |
| Enterobacter sp. TBS_079 | 0.75 | MPMX20_04349 | | Solute-binding protein | 0.66 | MPMX20_03143 | | hypothetical protein | low | > 85 |
| Pantoea sp. MT58 | 0.66 | IAI47_03230 | | TRAP transporter substrate-binding protein | 0.56 | IAI47_06615 | | ABC transporter substrate-binding protein | low | > 76 |
| Acidovorax sp. GW101-3H11 | 0.53 | Ac3H11_3957 | | TRAP-type C4-dicarboxylate transport system, periplasmic component | 0.29 | Ac3H11_2911 | | ABC transporter, periplasmic substrate-binding protein | low | > 79 |
| Pseudomonas putida KT2440 | 0.50 | PP_1169 | | D-glucuronate / D-galacturonate TRAP transporter, solute receptor component (from data) | 0.37 | PP_4147 | | microcin C transporter - periplasmic binding protein | low | > 96 |
| Pseudomonas stutzeri RCH2 | 0.50 | Psest_0363 | | tripartite ATP-independent periplasmic transporter solute receptor, DctP family | 0.36 | Psest_2067 | | ABC-type oligopeptide transport system, periplasmic component | low | > 67 |
| Pseudomonas fluorescens FW300-N2E2 | 0.49 | Pf6N2E2_487 | | TRAP-type C4-dicarboxylate transport system, periplasmic component | 0.36 | Pf6N2E2_584 | | ABC transporter, periplasmic substrate-binding protein | low | > 103 |
| Pseudomonas simiae WCS417 | 0.49 | PS417_17370 | | C4-dicarboxylate ABC transporter | 0.37 | PS417_12205 | | hypothetical protein | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.49 | PFLU_RS19295 | | TRAP transporter substrate-binding protein | 0.37 | PFLU_RS12895 | | ABC transporter substrate-binding protein | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.49 | PFLU_RS19295 | | TRAP transporter substrate-binding protein | 0.37 | PFLU_RS12895 | | ABC transporter substrate-binding protein | low | > 109 |
| Pseudomonas sp. RS175 | 0.48 | PFR28_02438 | | Solute-binding protein | 0.35 | PFR28_01549 | | Oligopeptide-binding protein AppA | low | > 88 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.47 | Psyr_0900 | | TRAP dicarboxylate transporter- DctP subunit | 0.35 | Psyr_1758 | | extracellular solute-binding protein, family 5 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.47 | Psyr_0900 | | TRAP dicarboxylate transporter- DctP subunit | 0.35 | Psyr_1758 | | extracellular solute-binding protein, family 5 | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.47 | AO356_23055 | | C4-dicarboxylate ABC transporter | 0.36 | AO356_24465 | | hypothetical protein | low | > 104 |
| Azospirillum brasilense Sp245 | 0.36 | AZOBR_RS30130 | | C4-dicarboxylate ABC transporter | 0.38 | AZOBR_RS14595 | | hypothetical protein | low | > 97 |
| Bosea sp. OAE506 | 0.35 | ABIE41_RS07830 | | TRAP transporter substrate-binding protein | 0.26 | ABIE41_RS15835 | | extracellular solute-binding protein | low | > 77 |
| Agrobacterium fabrum C58 | 0.35 | Atu3137 | | C4-dicarboxylate-binding protein | 0.28 | Atu0187 | | ABC transporter, substrate binding protein (peptide) | low | > 89 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.35 | GFF797 | | TRAP-type C4-dicarboxylate transport system, periplasmic component | 0.27 | GFF4335 | | ABC transporter, periplasmic substrate-binding protein | low | > 90 |
| Sinorhizobium meliloti 1021 | 0.34 | SM_b21353 | | periplasmic C4-dicarboxylate transport protein | 0.31 | SMc02832 | | periplasmic binding protein | low | > 103 |
| Azospirillum sp. SherDot2 | 0.33 | MPMX19_05801 | | Solute-binding protein | 0.39 | MPMX19_02168 | | hypothetical protein | low | > 112 |
| Variovorax sp. OAS795 | 0.33 | ABID97_RS10340 | | TRAP transporter substrate-binding protein | 0.28 | ABID97_RS16520 | | extracellular solute-binding protein | low | > 91 |
| Paraburkholderia graminis OAS925 | 0.30 | ABIE53_006502 | | tripartite ATP-independent transporter DctP family solute receptor | 0.30 | ABIE53_002550 | | microcin C transport system substrate-binding protein | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.30 | H281DRAFT_05324 | | tripartite ATP-independent transporter solute receptor, DctP family | 0.31 | H281DRAFT_00560 | | microcin C transport system substrate-binding protein | low | > 103 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.30 | OHPLBJKB_03838 | | Solute-binding protein | 0.66 | OHPLBJKB_01532 | | hypothetical protein | low | > 73 |
| Burkholderia phytofirmans PsJN | 0.29 | BPHYT_RS24175 | | C4-dicarboxylate ABC transporter | 0.29 | BPHYT_RS12385 | | peptide ABC transporter substrate-binding protein | low | > 109 |
| Escherichia coli ECRC62 | 0.29 | BNILDI_07130 | | Bacterial extracellular solute-binding protein, family 7 | 0.66 | BNILDI_13885 | yejA | Uncharacterized protein YejA | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.29 | GFF3130 | | TRAP-type C4-dicarboxylate transport system, periplasmic component | 0.66 | GFF3759 | | ABC transporter, periplasmic substrate-binding protein | low | > 78 |
| Klebsiella michiganensis M5al | 0.29 | BWI76_RS24125 | | hypothetical protein | 0.63 | BWI76_RS19780 | | antibiotic ABC transporter substrate-binding protein | low | > 92 |
| Escherichia coli Nissle 1917 | 0.28 | ECOLIN_RS17380 | | TRAP transporter substrate-binding protein | 0.66 | ECOLIN_RS12730 | | extracellular solute-binding protein | low | > 55 |
| Variovorax sp. SCN45 | 0.28 | GFF2918 | | TRAP-type C4-dicarboxylate transport system, periplasmic component | 0.27 | GFF229 | | ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) | low | > 127 |
| Ralstonia sp. UNC404CL21Col | 0.28 | ABZR87_RS21090 | | TRAP transporter substrate-binding protein | 0.28 | ABZR87_RS10680 | | extracellular solute-binding protein | low | > 80 |
| Serratia liquefaciens MT49 | 0.27 | IAI46_00375 | | TRAP transporter substrate-binding protein | 0.68 | IAI46_17315 | | ABC transporter substrate-binding protein | low | > 86 |
| Escherichia coli ECOR38 | 0.26 | HEPCGN_18535 | | Bacterial extracellular solute-binding protein, family 7 | 0.66 | HEPCGN_22655 | yejA | Uncharacterized protein YejA | low | > 87 |
| Escherichia coli ECOR27 | 0.26 | NOLOHH_11100 | | Bacterial extracellular solute-binding protein, family 7 | 0.66 | NOLOHH_14965 | yejA | Uncharacterized protein YejA | low | > 75 |
| Escherichia fergusonii Becca | 0.24 | EFB2_00227 | | 2,3-diketo-L-gulonate-binding periplasmic protein YiaO | 0.66 | EFB2_01679 | | hypothetical protein | low | > 86 |
| Escherichia coli BW25113 | 0.24 | b3579 | yiaO | predicted transporter (NCBI) | 0.66 | b2177 | yejA | orf, hypothetical protein (VIMSS) | low | > 76 |
| Escherichia coli BL21 | 0.24 | ECD_03431 | | 2,3-diketo-L-gulonate-binding periplasmic protein | 0.66 | ECD_02107 | | microcin C ABC transporter periplasmic binding protein | low | > 61 |
| Herbaspirillum seropedicae SmR1 | 0.21 | HSERO_RS04240 | | C4-dicarboxylate ABC transporter | 0.31 | HSERO_RS17145 | | peptide ABC transporter substrate-binding protein | low | > 78 |
| Rhodospirillum rubrum S1H | 0.20 | Rru_A3678 | | TRAP dicarboxylate transporter- DctP subunit (NCBI) | 0.38 | Rru_A3166 | | extracellular solute-binding protein, family 5 (NCBI) | low | > 58 |
| Magnetospirillum magneticum AMB-1 | 0.20 | AMB_RS04560 | | C4-dicarboxylate ABC transporter | 0.37 | AMB_RS22200 | | ABC transporter substrate-binding protein | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.20 | CSW01_08925 | | sialic acid-binding protein | 0.50 | CSW01_17185 | | ABC transporter substrate-binding protein | low | > 62 |
| Dinoroseobacter shibae DFL-12 | 0.19 | Dshi_3326 | | TRAP dicarboxylate transporter, DctP subunit (RefSeq) | 0.29 | Dshi_0655 | | extracellular solute-binding protein family 5 (RefSeq) | low | > 64 |
| Cupriavidus basilensis FW507-4G11 | 0.18 | RR42_RS10600 | | C4-dicarboxylate ABC transporter substrate-binding protein | 0.30 | RR42_RS13385 | | peptide ABC transporter substrate-binding protein | low | > 128 |
| Rhodopseudomonas palustris CGA009 | 0.18 | TX73_010550 | | TRAP transporter substrate-binding protein | 0.31 | TX73_019130 | | extracellular solute-binding protein | low | > 86 |
| Rhizobium sp. OAE497 | 0.17 | ABIE40_RS25820 | | sialic acid TRAP transporter substrate-binding protein SiaP | 0.30 | ABIE40_RS00615 | | extracellular solute-binding protein | low | > 107 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.17 | DVU0011 | | TRAP dicarboxylate family transporter (TIGR) | 0.33 | DVU2384 | | ABC transporter, periplasmic substrate-binding protein (TIGR) | low | > 55 |
| Phaeobacter inhibens DSM 17395 | 0.15 | PGA1_c20680 | | TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, substrate-binding component (from data) | 0.31 | PGA1_c30180 | | ABC transporter extracellular solute-binding protein | low | > 62 |
| Pseudomonas sp. S08-1 | 0.11 | OH686_16140 | | TRAP-type transporter, substrate-binding protein | 0.36 | OH686_03600 | | ABC transporter periplasmic substrate-binding protein | low | > 80 |
Not shown: 11 genomes with orthologs for HER17_RS19675 only; 20 genomes with orthologs for HER17_RS12920 only