Conservation of cofitness between HER17_RS10870 and HER17_RS04245 in Pectobacterium carotovorum WPP14

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS10870 HTH-type transcriptional regulator CysB 1.0 HER17_RS04245 phosphoadenylyl-sulfate reductase 0.94 17
Dickeya dadantii 3937 0.95 DDA3937_RS10540 HTH-type transcriptional regulator CysB 0.87 DDA3937_RS16935 phosphoadenylyl-sulfate reductase low > 74
Dickeya dianthicola 67-19 0.95 HGI48_RS10540 HTH-type transcriptional regulator CysB 0.86 HGI48_RS17005 phosphoadenylyl-sulfate reductase low > 71
Dickeya dianthicola ME23 0.95 DZA65_RS11020 HTH-type transcriptional regulator CysB 0.86 DZA65_RS18080 phosphoadenylyl-sulfate reductase low > 75
Serratia liquefaciens MT49 0.93 IAI46_13965 HTH-type transcriptional regulator CysB 0.85 IAI46_03695 phosphoadenylyl-sulfate reductase — —
Rahnella sp. WP5 0.93 EX31_RS09890 HTH-type transcriptional regulator CysB 0.81 EX31_RS07895 phosphoadenylyl-sulfate reductase 0.96 16
Klebsiella michiganensis M5al 0.92 BWI76_RS11930 LysR family transcriptional regulator CysB 0.85 BWI76_RS22755 phosphoadenosine phosphosulfate reductase — —
Erwinia tracheiphila SCR3 0.92 LU632_RS12550 cysB HTH-type transcriptional regulator CysB 0.80 LU632_RS06410 phosphoadenylyl-sulfate reductase — —
Escherichia coli ECOR38 0.91 HEPCGN_25600 cysB HTH-type transcriptional regulator CysB 0.83 HEPCGN_19085 cysH phosphoadenosine phosphosulfate reductase 0.79 38
Enterobacter sp. TBS_079 0.91 MPMX20_02501 HTH-type transcriptional regulator CysB 0.84 MPMX20_03641 Phosphoadenosine phosphosulfate reductase — —
Escherichia coli ECRC99 0.91 KEDOAH_26165 cysB HTH-type transcriptional regulator CysB 0.85 KEDOAH_07745 cysH phosphoadenosine phosphosulfate reductase — —
Escherichia coli ECRC100 0.91 OKFHMN_02600 cysB HTH-type transcriptional regulator CysB 0.85 OKFHMN_20380 cysH phosphoadenosine phosphosulfate reductase — —
Escherichia coli BL21 0.91 ECD_01251 N-acetylserine-responsive cysteine regulon transcriptional activator; autorepressor 0.84 ECD_02607 phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent — —
Escherichia coli Nissle 1917 0.91 ECOLIN_RS07680 HTH-type transcriptional regulator CysB 0.84 ECOLIN_RS15400 phosphoadenosine phosphosulfate reductase low > 55
Escherichia fergusonii Becca 0.91 EFB2_02652 HTH-type transcriptional regulator CysB 0.84 EFB2_01155 Phosphoadenosine phosphosulfate reductase — —
Escherichia coli BW25113 0.91 b1275 cysB DNA-binding transcriptional dual regulator, O-acetyl-L-serine-binding (NCBI) 0.84 b2762 cysH phosphoadenosine phosphosulfate reductase (NCBI) — —
Escherichia coli ECRC101 0.91 MCAODC_15665 cysB HTH-type transcriptional regulator CysB 0.85 MCAODC_10905 cysH phosphoadenosine phosphosulfate reductase — —
Escherichia coli ECRC102 0.91 NIAGMN_26770 cysB HTH-type transcriptional regulator CysB 0.85 NIAGMN_18150 cysH phosphoadenosine phosphosulfate reductase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF2712 Cys regulon transcriptional activator CysB 0.87 GFF4818 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) — —
Enterobacter asburiae PDN3 0.91 EX28DRAFT_0946 Transcriptional regulator 0.85 EX28DRAFT_2851 phosphoadenosine phosphosulfate reductase, thioredoxin dependent — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.91 OHPLBJKB_02409 HTH-type transcriptional regulator CysB 0.84 OHPLBJKB_00971 Phosphoadenosine phosphosulfate reductase low > 73
Escherichia coli ECOR27 0.91 NOLOHH_20265 cysB HTH-type transcriptional regulator CysB 0.83 NOLOHH_12195 cysH phosphoadenosine phosphosulfate reductase — —
Escherichia coli ECRC98 0.91 JDDGAC_05145 cysB HTH-type transcriptional regulator CysB 0.85 JDDGAC_24045 cysH phosphoadenosine phosphosulfate reductase — —
Escherichia coli ECRC62 0.91 BNILDI_18415 cysB HTH-type transcriptional regulator CysB 0.83 BNILDI_10745 cysH phosphoadenosine phosphosulfate reductase — —
Pantoea sp. MT58 0.90 IAI47_09240 HTH-type transcriptional regulator CysB 0.81 IAI47_04160 phosphoadenylyl-sulfate reductase 0.63 69
Vibrio cholerae E7946 ATCC 55056 0.80 CSW01_09545 HTH-type transcriptional regulator CysB 0.72 CSW01_02020 phosphoadenosine phosphosulfate reductase — —
Alteromonas macleodii MIT1002 0.78 MIT1002_02005 Cys regulon transcriptional activator 0.65 MIT1002_03378 Phosphoadenosine phosphosulfate reductase — —
Shewanella amazonensis SB2B 0.75 Sama_1324 cysB transcriptional regulator CysB (RefSeq) 0.65 Sama_2837 phosphoadenosine phosphosulfate reductase (RefSeq) — —
Shewanella oneidensis MR-1 0.75 SO2649 cysB cys regulon transcriptional activator (NCBI ptt file) 0.65 SO3736 cysH phosphoadenosine phosphosulfate reductase (NCBI ptt file) 0.78 73
Shewanella sp. ANA-3 0.75 Shewana3_1731 cysB transcriptional regulator CysB (RefSeq) 0.65 Shewana3_0857 phosphoadenosine phosphosulfate reductase (RefSeq) — —
Shewanella loihica PV-4 0.75 Shew_1624 cysB transcriptional regulator CysB (RefSeq) 0.64 Shew_0667 phosphoadenosine phosphosulfate reductase (RefSeq) — —
Pseudomonas putida KT2440 0.68 PP_2327 transcriptional dual regulator / CysB-O-acetyl-L-serine 0.18 PP_2328 Phosphoadenosine phosphosulfate reductase 0.71 38
Marinobacter adhaerens HP15 0.68 HP15_1854 transcriptional regulator, LysR family 0.18 HP15_1853 phosphoadenosine phosphosulfate reductase — —
Pseudomonas simiae WCS417 0.68 PS417_08460 CysB family transcriptional regulator 0.18 PS417_21125 phosphoadenosine phosphosulfate reductase — —
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_2230 Cys regulon transcriptional activator CysB 0.18 PfGW456L13_4125 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) 0.72 62
Pseudomonas fluorescens FW300-N1B4 0.67 Pf1N1B4_283 Cys regulon transcriptional activator CysB 0.18 Pf1N1B4_3812 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) — —
Pseudomonas sp. S08-1 0.67 OH686_01730 Cys regulon transcriptional activator CysB 0.20 OH686_01725 Phosphoadenylyl-sulfate reductase [thioredoxin] — —
Pseudomonas fluorescens SBW25-INTG 0.67 PFLU_RS08410 HTH-type transcriptional regulator CysB 0.17 PFLU_RS22740 phosphoadenylyl-sulfate reductase low > 109
Pseudomonas fluorescens FW300-N2C3 0.67 AO356_03180 CysB family transcriptional regulator 0.18 AO356_20830 phosphoadenosine phosphosulfate reductase 0.48 37
Pseudomonas fluorescens FW300-N2E3 0.67 AO353_19060 CysB family transcriptional regulator 0.18 AO353_00935 phosphoadenosine phosphosulfate reductase — —
Pseudomonas fluorescens FW300-N2E2 0.67 Pf6N2E2_2465 Cys regulon transcriptional activator CysB 0.18 Pf6N2E2_6054 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) — —
Pseudomonas fluorescens SBW25 0.67 PFLU_RS08410 HTH-type transcriptional regulator CysB 0.17 PFLU_RS22740 phosphoadenylyl-sulfate reductase low > 109
Pseudomonas sp. RS175 0.67 PFR28_00966 HTH-type transcriptional regulator CysB 0.18 PFR28_02935 Phosphoadenosine phosphosulfate reductase — —
Pseudomonas syringae pv. syringae B728a 0.66 Psyr_2077 regulatory protein, LysR:LysR, substrate-binding protein 0.17 Psyr_2078 phosphoadenylylsulfate reductase (thioredoxin) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.66 Psyr_2077 regulatory protein, LysR:LysR, substrate-binding protein 0.17 Psyr_2078 phosphoadenylylsulfate reductase (thioredoxin) — —
Pseudomonas stutzeri RCH2 0.66 Psest_2329 Transcriptional regulator 0.16 Psest_2328 phosophoadenylyl-sulfate reductase (thioredoxin)/thioredoxin-dependent adenylylsulfate APS reductase — —
Variovorax sp. OAS795 0.43 ABID97_RS16600 CysB family HTH-type transcriptional regulator 0.19 ABID97_RS15370 phosphoadenosine phosphosulfate reductase family protein 0.79 9
Kangiella aquimarina DSM 16071 0.43 B158DRAFT_2455 Transcriptional regulator 0.56 B158DRAFT_2162 phosphoadenosine phosphosulfate reductase, thioredoxin dependent low > 40
Acidovorax sp. GW101-3H11 0.40 Ac3H11_2403 Alkanesulfonate utilization operon LysR-family regulator CbI 0.20 Ac3H11_575 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) 0.60 52
Castellaniella sp019104865 MT123 0.40 ABCV34_RS08230 CysB family HTH-type transcriptional regulator 0.17 ABCV34_RS14110 phosphoadenylyl-sulfate reductase 0.56 17
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_05975 lysR CysB family transcriptional regulator 0.62 OKGIIK_05970 cysH phosphoadenylyl-sulfate reductase low > 52
Rhodanobacter denitrificans MT42 0.36 LRK55_RS00690 LysR substrate-binding domain-containing protein 0.62 LRK55_RS00695 phosphoadenylyl-sulfate reductase low > 63
Rhodanobacter denitrificans FW104-10B01 0.36 LRK54_RS00915 LysR substrate-binding domain-containing protein 0.62 LRK54_RS00920 phosphoadenylyl-sulfate reductase 0.58 45
Dyella japonica UNC79MFTsu3.2 0.35 ABZR86_RS05885 LysR substrate-binding domain-containing protein 0.60 ABZR86_RS05895 phosphoadenylyl-sulfate reductase 0.98 2
Lysobacter sp. OAE881 0.34 ABIE51_RS15850 LysR family transcriptional regulator 0.60 ABIE51_RS15835 phosphoadenylyl-sulfate reductase 0.97 16
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.1249.1 Transcriptional regulator 0.63 Xcc-8004.1256.1 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) 0.81 1
Mucilaginibacter yixingensis YX-36 DSM 26809 0.16 ABZR88_RS05415 LysR substrate-binding domain-containing protein 0.20 ABZR88_RS04945 phosphoadenylyl-sulfate reductase — —

Not shown: 3 genomes with orthologs for HER17_RS10870 only; 20 genomes with orthologs for HER17_RS04245 only