Conservation of cofitness between HER17_RS17265 and HER17_RS00495 in Pectobacterium carotovorum WPP14

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS17265 oxygen-dependent coproporphyrinogen oxidase 1.0 HER17_RS00495 branched-chain amino acid ABC transporter substrate-binding protein 0.91 11
Dickeya dadantii 3937 0.81 DDA3937_RS04365 oxygen-dependent coproporphyrinogen oxidase 0.91 DDA3937_RS00660 branched-chain amino acid ABC transporter substrate-binding protein
Rahnella sp. WP5 0.80 EX31_RS20260 oxygen-dependent coproporphyrinogen oxidase 0.88 EX31_RS14805 branched-chain amino acid ABC transporter substrate-binding protein low > 89
Dickeya dianthicola 67-19 0.80 HGI48_RS04355 oxygen-dependent coproporphyrinogen oxidase 0.88 HGI48_RS20730 high-affinity branched-chain amino acid ABC transporter substrate-binding protein low > 71
Dickeya dianthicola ME23 0.79 DZA65_RS04275 oxygen-dependent coproporphyrinogen oxidase 0.88 DZA65_RS21740 branched-chain amino acid ABC transporter substrate-binding protein
Serratia liquefaciens MT49 0.78 IAI46_18545 oxygen-dependent coproporphyrinogen oxidase 0.87 IAI46_00960 branched-chain amino acid ABC transporter substrate-binding protein low > 86
Pantoea sp. MT58 0.76 IAI47_05360 oxygen-dependent coproporphyrinogen oxidase 0.78 IAI47_01565 branched-chain amino acid ABC transporter substrate-binding protein
Erwinia tracheiphila SCR3 0.75 LU632_RS06720 hemF oxygen-dependent coproporphyrinogen oxidase 0.82 LU632_RS19255 branched-chain amino acid ABC transporter substrate-binding protein
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.73 GFF2066 Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3) 0.77 GFF545 High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1) low > 78
Escherichia coli ECRC62 0.73 BNILDI_12640 hemF oxygen-dependent coproporphyrinogen oxidase 0.79 BNILDI_02970 livK high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK low > 75
Escherichia coli ECOR27 0.73 NOLOHH_13775 hemF oxygen-dependent coproporphyrinogen oxidase 0.79 NOLOHH_08535 livK high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK low > 75
Escherichia coli Nissle 1917 0.73 ECOLIN_RS13965 oxygen-dependent coproporphyrinogen oxidase 0.79 ECOLIN_RS19775 high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK low > 55
Escherichia coli BL21 0.73 ECD_02336 coproporphyrinogen III oxidase 0.78 ECD_03307 leucine transporter subunit low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_01286 Oxygen-dependent coproporphyrinogen-III oxidase 0.79 OHPLBJKB_00245 Leucine-specific-binding protein low > 73
Escherichia coli BW25113 0.73 b2436 hemF coproporphyrinogen III oxidase (NCBI) 0.79 b3458 livK leucine transporter subunit (NCBI) low > 76
Escherichia coli ECOR38 0.73 HEPCGN_21270 hemF oxygen-dependent coproporphyrinogen oxidase 0.79 HEPCGN_15560 livK high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK low > 87
Enterobacter sp. TBS_079 0.72 MPMX20_03323 Oxygen-dependent coproporphyrinogen-III oxidase 0.78 MPMX20_04334 Leucine-specific-binding protein low > 85
Enterobacter asburiae PDN3 0.72 EX28DRAFT_0199 coproporphyrinogen oxidase (EC 1.3.3.3) 0.79 EX28DRAFT_4290 ABC-type branched-chain amino acid transport systems, periplasmic component low > 76
Escherichia fergusonii Becca 0.72 EFB2_01443 Oxygen-dependent coproporphyrinogen-III oxidase 0.79 EFB2_00364 Leucine-specific-binding protein low > 86
Escherichia coli ECRC98 0.71 JDDGAC_26045 hemF oxygen-dependent coproporphyrinogen oxidase 0.79 JDDGAC_20370 livK high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK low > 86
Escherichia coli ECRC99 0.71 KEDOAH_06125 hemF oxygen-dependent coproporphyrinogen oxidase 0.79 KEDOAH_11400 livK high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK
Escherichia coli ECRC101 0.71 MCAODC_12625 hemF oxygen-dependent coproporphyrinogen oxidase 0.79 MCAODC_07270 livK high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK low > 87
Escherichia coli ECRC102 0.71 NIAGMN_19865 hemF oxygen-dependent coproporphyrinogen oxidase 0.79 NIAGMN_14510 livK high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK
Escherichia coli ECRC100 0.71 OKFHMN_22095 hemF oxygen-dependent coproporphyrinogen oxidase 0.79 OKFHMN_16740 livK high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK low > 80
Klebsiella michiganensis M5al 0.70 BWI76_RS20740 coproporphyrinogen III oxidase 0.77 BWI76_RS26350 branched chain amino acid ABC transporter substrate-binding protein low > 92
Pseudomonas stutzeri RCH2 0.67 Psest_0028 Coproporphyrinogen III oxidase 0.61 Psest_1312 ABC-type branched-chain amino acid transport systems, periplasmic component low > 67
Pseudomonas fluorescens FW300-N1B4 0.67 Pf1N1B4_1907 Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3) 0.60 Pf1N1B4_3218 High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1)
Pseudomonas fluorescens GW456-L13 0.67 PfGW456L13_645 Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3) 0.60 PfGW456L13_4606 High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1)
Pseudomonas sp. RS175 0.66 PFR28_04656 Oxygen-dependent coproporphyrinogen-III oxidase 0.59 PFR28_00540 Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein
Pseudomonas putida KT2440 0.66 PP_0073 Coproporphyrinogen-III oxidase, aerobic 0.59 PP_1141 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit
Pseudomonas fluorescens FW300-N2E3 0.66 AO353_10665 coproporphyrinogen III oxidase 0.61 AO353_17125 leucine ABC transporter substrate-binding protein
Pseudomonas syringae pv. syringae B728a ΔmexB 0.66 Psyr_0024 coproporphyrinogen oxidase 0.62 Psyr_3845 L-leucine-binding protein / L-valine-binding protein / L-isoleucine-binding protein
Pseudomonas syringae pv. syringae B728a 0.66 Psyr_0024 coproporphyrinogen oxidase 0.62 Psyr_3845 L-leucine-binding protein / L-valine-binding protein / L-isoleucine-binding protein
Pseudomonas fluorescens FW300-N2C3 0.66 AO356_11310 coproporphyrinogen III oxidase 0.61 AO356_05320 leucine ABC transporter substrate-binding protein
Pseudomonas fluorescens FW300-N2E2 0.66 Pf6N2E2_4129 Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3) 0.60 Pf6N2E2_2921 ABC transporter for L-leucine/L-phenylalanine/D-alanine, substrate-binding component LivK (from data)
Pseudomonas sp. S08-1 0.66 OH686_12490 Coproporphyrinogen III oxidase, aerobic 0.60 OH686_04605 Branched-chain amino acid ABC transporter, substrate-binding protein LivJ
Pseudomonas fluorescens SBW25-INTG 0.65 PFLU_RS00115 oxygen-dependent coproporphyrinogen oxidase 0.59 PFLU_RS06645 branched-chain amino acid ABC transporter substrate-binding protein
Pseudomonas fluorescens SBW25 0.65 PFLU_RS00115 oxygen-dependent coproporphyrinogen oxidase 0.59 PFLU_RS06645 branched-chain amino acid ABC transporter substrate-binding protein
Pseudomonas simiae WCS417 0.64 PS417_00120 coproporphyrinogen III oxidase 0.59 PS417_06615 ABC transporter for branched-chain amino acids, substrate-binding component (from data)
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS17765 coproporphyrinogen III oxidase 0.51 HSERO_RS08270 amino acid ABC transporter substrate-binding protein
Ralstonia solanacearum PSI07 0.62 RPSI07_RS13675 oxygen-dependent coproporphyrinogen oxidase 0.24 RPSI07_RS12690 branched-chain amino acid ABC transporter substrate-binding protein
Paraburkholderia sabiae LMG 24235 0.62 QEN71_RS24405 oxygen-dependent coproporphyrinogen oxidase 0.25 QEN71_RS00600 branched-chain amino acid ABC transporter substrate-binding protein
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS06400 oxygen-dependent coproporphyrinogen-III oxidase 0.24 BPHYT_RS01885 branched-chain amino acid ABC transporter substrate-binding protein low > 109
Paraburkholderia graminis OAS925 0.62 ABIE53_001544 coproporphyrinogen III oxidase 0.25 ABIE53_000461 branched-chain amino acid transport system substrate-binding protein low > 113
Ralstonia solanacearum UW163 0.62 UW163_RS10120 coproporphyrinogen III oxidase 0.24 UW163_RS08975 branched-chain amino acid ABC transporter substrate-binding protein
Ralstonia solanacearum IBSBF1503 0.62 RALBFv3_RS03550 coproporphyrinogen III oxidase 0.24 RALBFv3_RS04695 branched-chain amino acid ABC transporter substrate-binding protein
Paraburkholderia bryophila 376MFSha3.1 0.62 H281DRAFT_04520 coproporphyrinogen oxidase 0.25 H281DRAFT_02161 amino acid/amide ABC transporter substrate-binding protein, HAAT family
Ralstonia solanacearum GMI1000 0.62 RS_RS11000 coproporphyrinogen III oxidase 0.24 RS_RS12255 branched-chain amino acid ABC transporter substrate-binding protein
Ralstonia sp. UNC404CL21Col 0.62 ABZR87_RS15415 oxygen-dependent coproporphyrinogen oxidase 0.23 ABZR87_RS00315 branched-chain amino acid ABC transporter substrate-binding protein
Cupriavidus basilensis FW507-4G11 0.61 RR42_RS04725 coproporphyrinogen III oxidase 0.51 RR42_RS14425 leucine ABC transporter substrate-binding protein
Variovorax sp. OAS795 0.59 ABID97_RS16730 oxygen-dependent coproporphyrinogen oxidase 0.30 ABID97_RS27585 branched-chain amino acid ABC transporter substrate-binding protein
Variovorax sp. SCN45 0.59 GFF301 Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3) 0.27 GFF237 ABC-type branched-chain amino acid transport systems, periplasmic component
Acidovorax sp. GW101-3H11 0.59 Ac3H11_2420 Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3) 0.20 Ac3H11_4169 Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1)
Castellaniella sp019104865 MT123 0.58 ABCV34_RS02545 oxygen-dependent coproporphyrinogen oxidase 0.47 ABCV34_RS03585 branched-chain amino acid ABC transporter substrate-binding protein 0.85 6
Azospirillum sp. SherDot2 0.34 MPMX19_05010 Oxygen-dependent coproporphyrinogen-III oxidase 0.38 MPMX19_04840 Leu/Ile/Val-binding protein
Phaeobacter inhibens DSM 17395 0.33 PGA1_c29970 coproporphyrinogen 3 oxidase, aerobic 0.10 PGA1_c15890 extracellular ligand-binding receptor
Bosea sp. OAE506 0.33 ABIE41_RS11175 oxygen-dependent coproporphyrinogen oxidase 0.35 ABIE41_RS13610 branched-chain amino acid ABC transporter substrate-binding protein
Rhodopseudomonas palustris CGA009 0.32 TX73_007780 oxygen-dependent coproporphyrinogen oxidase 0.37 TX73_019730 branched-chain amino acid ABC transporter substrate-binding protein low > 86
Sinorhizobium meliloti 1021 0.31 SMc00180 coproporphyrinogen III oxidase 0.37 SMc00078 Leu/Ile/Val-binding protein
Agrobacterium fabrum C58 0.30 Atu2247 coproporphyrinogen III oxidase 0.33 Atu2422 ABC transporter, substrate binding protein (amino acid)
Rhizobium sp. OAE497 0.30 ABIE40_RS13225 oxygen-dependent coproporphyrinogen oxidase 0.35 ABIE40_RS14690 branched-chain amino acid ABC transporter substrate-binding protein

Not shown: 24 genomes with orthologs for HER17_RS17265 only; 9 genomes with orthologs for HER17_RS00495 only