| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 1.0 | GFF4893 | | Nitrogen regulation protein NR(I) | 1.0 | GFF689 | | Cytochrome c oxidase polypeptide I (EC 1.9.3.1) | 0.71 | 5 |
| Acidovorax sp. GW101-3H11 | 0.90 | Ac3H11_4095 | | Nitrogen regulation protein NR(I) | 0.92 | Ac3H11_3891 | | Cytochrome c oxidase polypeptide I (EC 1.9.3.1) | 0.58 | 56 |
| Variovorax sp. OAS795 | 0.88 | ABID97_RS14090 | | response regulator transcription factor | 0.91 | ABID97_RS23960 | | cytochrome c oxidase subunit I | low | > 91 |
| Variovorax sp. SCN45 | 0.87 | GFF965 | | Two-component transcriptional response regulator, LuxR family | 0.91 | GFF2298 | | Cytochrome c oxidase polypeptide I (EC 1.9.3.1) | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.65 | RR42_RS07355 | | LuxR family transcriptional regulator | 0.81 | RR42_RS01880 | | cytochrome oxidase subunit I | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.64 | H281DRAFT_00464 | | two component transcriptional regulator, LuxR family | 0.79 | H281DRAFT_01993 | | cytochrome c oxidase subunit 1 | — | — |
| Paraburkholderia graminis OAS925 | 0.63 | ABIE53_002795 | | FixJ family two-component response regulator | 0.79 | ABIE53_000674 | | cytochrome c oxidase subunit 1 | — | — |
| Burkholderia phytofirmans PsJN | 0.63 | BPHYT_RS12850 | | LuxR family transcriptional regulator | 0.79 | BPHYT_RS02645 | | cytochrome oxidase subunit I | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.63 | QEN71_RS05715 | | oxygen response regulator transcription factor FixJ | 0.79 | QEN71_RS01500 | | cytochrome c oxidase subunit I | — | — |
| Ralstonia solanacearum PSI07 | 0.61 | RPSI07_RS15805 | | DNA-binding response regulator | 0.84 | RPSI07_RS22360 | | cytochrome c oxidase subunit I | — | — |
| Castellaniella sp019104865 MT123 | 0.61 | ABCV34_RS04170 | | response regulator transcription factor | 0.77 | ABCV34_RS13270 | | cytochrome c oxidase subunit I | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.61 | RALBFv3_RS01680 | | DNA-binding response regulator | 0.83 | RALBFv3_RS10950 | | cytochrome c oxidase subunit I | — | — |
| Ralstonia solanacearum GMI1000 | 0.61 | RS_RS08045 | | DNA-binding response regulator | 0.83 | RS_RS01790 | | cytochrome c oxidase subunit I | low | > 80 |
| Ralstonia solanacearum UW163 | 0.61 | UW163_RS14990 | | DNA-binding response regulator | 0.83 | UW163_RS02630 | | cytochrome c oxidase subunit I | — | — |
| Ralstonia sp. UNC404CL21Col | 0.61 | ABZR87_RS13480 | | response regulator transcription factor | 0.82 | ABZR87_RS06800 | | cytochrome c oxidase subunit I | — | — |
| Magnetospirillum magneticum AMB-1 | 0.47 | AMB_RS04570 | | DNA-binding response regulator | 0.54 | AMB_RS10960 | | cytochrome c oxidase subunit I | — | — |
| Marinobacter adhaerens HP15 | 0.45 | HP15_1053 | | two component transcriptional regulator, LuxR family | 0.68 | HP15_3772 | | cytochrome c oxidase, subunit I | low | > 73 |
| Herbaspirillum seropedicae SmR1 | 0.43 | HSERO_RS06700 | | LuxR family transcriptional regulator | 0.80 | HSERO_RS20785 | | cytochrome oxidase subunit I | low | > 78 |
| Pseudomonas fluorescens GW456-L13 | 0.43 | PfGW456L13_3749 | | Nitrogen regulation protein NR(I) | 0.69 | PfGW456L13_614 | | Cytochrome c oxidase polypeptide I (EC 1.9.3.1) | low | > 87 |
| Dyella japonica UNC79MFTsu3.2 | 0.43 | ABZR86_RS13745 | | response regulator | 0.64 | ABZR86_RS12925 | | cytochrome c oxidase subunit I | — | — |
| Shewanella loihica PV-4 | 0.42 | Shew_3240 | | two component LuxR family transcriptional regulator (RefSeq) | 0.68 | Shew_0124 | | cytochrome-c oxidase (RefSeq) | low | > 60 |
| Rhodopseudomonas palustris CGA009 | 0.40 | TX73_022010 | | response regulator FixJ | 0.54 | TX73_004290 | | cytochrome c oxidase subunit I | — | — |
| Shewanella sp. ANA-3 | 0.39 | Shewana3_0637 | | two component LuxR family transcriptional regulator (RefSeq) | 0.69 | Shewana3_3992 | | cytochrome c oxidase, subunit I (RefSeq) | low | > 73 |
| Caulobacter crescentus NA1000 Δfur | 0.39 | CCNA_00795 | | two-component response regulator FixJ | 0.51 | CCNA_03517 | | cytochrome c oxidase polypeptide I coxA | low | > 67 |
| Caulobacter crescentus NA1000 | 0.39 | CCNA_00795 | | two-component response regulator FixJ | 0.51 | CCNA_03517 | | cytochrome c oxidase polypeptide I coxA | low | > 66 |
| Sinorhizobium meliloti 1021 | 0.38 | SMa1227 | | response regulator FixJ | 0.52 | SMc00010 | | cytochrome C oxidase polypeptide I transmembrane protein | low | > 103 |
| Shewanella oneidensis MR-1 | 0.38 | SO4157 | | DNA-binding response regulator (NCBI ptt file) | 0.68 | SO4607 | | cytochrome c oxidase, subunit I (NCBI ptt file) | low | > 76 |
| Shewanella amazonensis SB2B | 0.37 | Sama_2399 | | response regulator receiver protein (RefSeq) | 0.69 | Sama_3484 | | cytochrome-c oxidase (RefSeq) | low | > 62 |
| Rhizobium sp. OAE497 | 0.37 | ABIE40_RS23715 | | response regulator | 0.52 | ABIE40_RS04065 | | cytochrome c oxidase subunit I | low | > 107 |
| Agrobacterium fabrum C58 | 0.36 | Atu4774 | | two component response regulator | 0.52 | Atu0768 | | cytochrome-c oxidase chain I | low | > 89 |
| Pseudomonas sp. S08-1 | 0.36 | OH686_18645 | | Two-component transcriptional response regulator, LuxR family | 0.67 | OH686_12320 | | cytochrome c oxidase, subunit I | low | > 80 |
| Sphingomonas koreensis DSMZ 15582 | 0.35 | Ga0059261_4074 | | two component transcriptional regulator, LuxR family | 0.52 | Ga0059261_2008 | | cytochrome c oxidase, subunit I | low | > 68 |
| Lysobacter sp. OAE881 | 0.35 | ABIE51_RS09725 | | response regulator | 0.63 | ABIE51_RS19205 | | cytochrome c oxidase subunit I | — | — |
| Pseudomonas simiae WCS417 | 0.35 | PS417_10320 | | hypothetical protein | 0.69 | PS417_00305 | | cytochrome oxidase subunit I | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.35 | Pf1N1B4_4408 | | two-component response regulator | 0.69 | Pf1N1B4_1854 | | Cytochrome c oxidase polypeptide I (EC 1.9.3.1) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.35 | Pf6N2E2_1724 | | DNA-binding response regulator, LuxR family | 0.69 | Pf6N2E2_4099 | | Cytochrome c oxidase polypeptide I (EC 1.9.3.1) | — | — |
| Pseudomonas sp. RS175 | 0.34 | PFR28_02521 | | Response regulator protein TmoT | 0.69 | PFR28_04690 | | Cytochrome c oxidase subunit 1 | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.34 | AO356_25435 | | nodulation protein NolW | 0.69 | AO356_11165 | | cytochrome oxidase subunit I | low | > 104 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.33 | A4249_RS15535 | | response regulator | 0.50 | A4249_RS00110 | | cytochrome c oxidase subunit I | — | — |
| Dinoroseobacter shibae DFL-12 | 0.32 | Dshi_2568 | | two component transcriptional regulator, LuxR family (RefSeq) | 0.50 | Dshi_2383 | | Cytochrome c oxidase subunit I type (RefSeq) | low | > 64 |
Not shown: 6 genomes with orthologs for GFF4893 only; 23 genomes with orthologs for GFF689 only