Conservation of cofitness between GFF615 and GFF611 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF615 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 1.0 GFF611 Transcription accessory protein (S1 RNA-binding domain) 0.41 13
Enterobacter asburiae PDN3 0.95 EX28DRAFT_4140 phosphoenolpyruvate carboxykinase (ATP) 0.91 EX28DRAFT_4136 Transcriptional accessory protein low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.94 OHPLBJKB_00300 Phosphoenolpyruvate carboxykinase (ATP) 0.92 OHPLBJKB_00296 Protein YhgF low > 73
Escherichia coli BW25113 0.94 b3403 pck phosphoenolpyruvate carboxykinase (NCBI) 0.92 b3407 yhgF orf, hypothetical protein (VIMSS) low > 76
Escherichia coli BL21 0.94 ECD_03255 phosphoenolpyruvate carboxykinase [ATP] 0.92 ECD_03259 putative transcriptional accessory protein low > 60
Escherichia coli Nissle 1917 0.94 ECOLIN_RS19435 phosphoenolpyruvate carboxykinase (ATP) 0.92 ECOLIN_RS19465 Tex family protein low > 52
Escherichia fergusonii Becca 0.94 EFB2_00425 Phosphoenolpyruvate carboxykinase (ATP) 0.92 EFB2_00421 Protein YhgF low > 86
Escherichia coli ECOR27 0.94 NOLOHH_08835 pckA phosphoenolpyruvate carboxykinase (ATP) 0.92 NOLOHH_08815 yhgF Protein YhgF low > 57
Escherichia coli ECRC62 0.94 BNILDI_02685 pckA phosphoenolpyruvate carboxykinase (ATP) 0.92 BNILDI_02705 yhgF Protein YhgF — —
Escherichia coli ECRC101 0.94 OKFHMN_17045 pckA phosphoenolpyruvate carboxykinase (ATP) 0.92 OKFHMN_17025 yhgF Protein YhgF — —
Escherichia coli ECRC102 0.94 NIAGMN_14815 pckA phosphoenolpyruvate carboxykinase (ATP) 0.92 NIAGMN_14795 yhgF Protein YhgF — —
Escherichia coli ECRC101 0.94 MCAODC_07575 pckA phosphoenolpyruvate carboxykinase (ATP) 0.92 MCAODC_07555 yhgF Protein YhgF — —
Escherichia coli ECRC98 0.94 JDDGAC_20675 pckA phosphoenolpyruvate carboxykinase (ATP) 0.92 JDDGAC_20655 yhgF Protein YhgF — —
Escherichia coli ECRC99 0.94 KEDOAH_11095 pckA phosphoenolpyruvate carboxykinase (ATP) 0.92 KEDOAH_11115 yhgF Protein YhgF — —
Escherichia coli ECOR38 0.94 HEPCGN_15865 pckA phosphoenolpyruvate carboxykinase (ATP) 0.92 HEPCGN_15835 yhgF Protein YhgF low > 85
Enterobacter sp. TBS_079 0.94 MPMX20_04290 Phosphoenolpyruvate carboxykinase (ATP) 0.91 MPMX20_04294 Protein YhgF low > 85
Klebsiella michiganensis M5al 0.94 BWI76_RS26155 phosphoenolpyruvate carboxykinase (ATP) 0.92 BWI76_RS26655 transcription accessory protein low > 92
Dickeya dianthicola 67-19 0.89 HGI48_RS19740 phosphoenolpyruvate carboxykinase (ATP) 0.83 HGI48_RS19770 RNA-binding transcriptional accessory protein low > 71
Dickeya dadantii 3937 0.88 DDA3937_RS19610 phosphoenolpyruvate carboxykinase (ATP) 0.84 DDA3937_RS19635 RNA-binding transcriptional accessory protein low > 74
Dickeya dianthicola ME23 0.88 DZA65_RS20830 phosphoenolpyruvate carboxykinase (ATP) 0.84 DZA65_RS20860 RNA-binding transcriptional accessory protein low > 75
Pectobacterium carotovorum WPP14 0.88 HER17_RS01710 phosphoenolpyruvate carboxykinase (ATP) 0.85 HER17_RS01615 RNA-binding transcriptional accessory protein low > 75
Serratia liquefaciens MT49 0.88 IAI46_23770 phosphoenolpyruvate carboxykinase (ATP) 0.83 IAI46_23800 RNA-binding transcriptional accessory protein low > 86
Rahnella sp. WP5 0.86 EX31_RS04780 phosphoenolpyruvate carboxykinase (ATP) 0.83 EX31_RS04840 RNA-binding transcriptional accessory protein low > 89
Erwinia tracheiphila SCR3 0.83 LU632_RS22930 pckA phosphoenolpyruvate carboxykinase (ATP) 0.84 LU632_RS22955 RNA-binding transcriptional accessory protein low > 74
Pantoea sp. MT58 0.81 IAI47_01830 phosphoenolpyruvate carboxykinase (ATP) 0.83 IAI47_01805 RNA-binding transcriptional accessory protein low > 76
Vibrio cholerae E7946 ATCC 55056 0.81 CSW01_13810 phosphoenolpyruvate carboxykinase (ATP) 0.66 CSW01_13705 RNA-binding transcriptional accessory protein low > 62
Kangiella aquimarina DSM 16071 0.77 B158DRAFT_2395 phosphoenolpyruvate carboxykinase (ATP) 0.60 B158DRAFT_0683 Transcriptional accessory protein low > 40
Bacteroides thetaiotaomicron VPI-5482 0.69 BT2790 phosphoenolpyruvate carboxykinase [ATP] (NCBI ptt file) 0.41 BT1238 putative RNA binding protein with S1 RNA-binding domain (NCBI ptt file) — —
Bacteroides stercoris CC31F 0.68 HMPREF1181_RS01170 phosphoenolpyruvate carboxykinase (ATP) 0.41 HMPREF1181_RS04035 RNA-binding transcriptional accessory protein — —
Parabacteroides merdae CL09T00C40 0.68 HMPREF1078_RS07235 phosphoenolpyruvate carboxykinase (ATP) 0.40 HMPREF1078_RS02415 Tex family protein — —
Phocaeicola dorei CL03T12C01 0.68 ABI39_RS06685 phosphoenolpyruvate carboxykinase (ATP) 0.40 ABI39_RS14580 RNA-binding transcriptional accessory protein — —
Phocaeicola vulgatus CL09T03C04 0.68 HMPREF1058_RS10065 phosphoenolpyruvate carboxykinase (ATP) 0.40 HMPREF1058_RS18285 RNA-binding transcriptional accessory protein — —
Bacteroides ovatus ATCC 8483 0.68 BACOVA_02011 phosphoenolpyruvate carboxykinase (ATP) 0.41 BACOVA_00531 Tex-like protein N-terminal domain protein — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.45 CA264_05270 phosphoenolpyruvate carboxykinase (ATP) 0.44 CA264_02750 RNA-binding transcriptional accessory protein — —
Agrobacterium fabrum C58 0.43 Atu0035 phosphoenolpyruvate carboxykinase 0.52 Atu0648 hypothetical protein low > 89
Echinicola vietnamensis KMM 6221, DSM 17526 0.43 Echvi_2957 phosphoenolpyruvate carboxykinase (ATP) 0.42 Echvi_3978 Transcriptional accessory protein — —
Sinorhizobium meliloti 1021 0.43 SMc02562 phosphoenolpyruvate carboxykinase 0.51 SMc02644 hypothetical protein low > 103
Rhodopseudomonas palustris CGA009 0.42 TX73_001865 phosphoenolpyruvate carboxykinase 0.53 TX73_003025 Tex family protein — —
Pedobacter sp. GW460-11-11-14-LB5 0.42 CA265_RS23490 phosphoenolpyruvate carboxykinase (ATP) 0.42 CA265_RS18880 RNA-binding transcriptional accessory protein low > 88
Rhizobium sp. OAE497 0.41 ABIE40_RS19415 phosphoenolpyruvate carboxykinase 0.53 ABIE40_RS05475 Tex family protein low > 107
Phaeobacter inhibens DSM 17395 0.39 PGA1_c01140 phosphoenolpyruvate carboxykinase 0.54 PGA1_c09850 S1 domain-containing protein low > 62
Fusobacterium nucleatum SB010 0.39 HUW76_06485 phosphoenolpyruvate carboxykinase (ATP) 0.34 HUW76_00320 RNA-binding transcriptional accessory protein low > 35
Shewanella amazonensis SB2B 0.38 Sama_0165 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (from data) 0.62 Sama_3508 hypothetical protein (RefSeq) low > 62
Marinobacter adhaerens HP15 0.38 HP15_3498 phosphoenolpyruvate carboxykinase (ATP) 0.61 HP15_216 DNA damage response protein (yhgF like) (from data) — —
Shewanella sp. ANA-3 0.37 Shewana3_0147 phosphoenolpyruvate carboxykinase (RefSeq) 0.61 Shewana3_4013 RNA-binding S1 domain-containing protein (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.37 MIT1002_03972 Phosphoenolpyruvate carboxykinase [ATP] 0.62 MIT1002_04012 hypothetical protein low > 70
Shewanella oneidensis MR-1 0.37 SO0162 pckA phosphoenolpyruvate carboxykinase (ATP) (NCBI ptt file) 0.61 SO4629 conserved hypothetical protein (NCBI ptt file) 0.24 65
Shewanella loihica PV-4 0.37 Shew_3623 phosphoenolpyruvate carboxykinase (RefSeq) 0.62 Shew_3634 RNA-binding S1 domain-containing protein (RefSeq) low > 60
Pseudomonas sp. RS175 0.35 PFR28_04874 Phosphoenolpyruvate carboxykinase (ATP) 0.61 PFR28_04867 Protein YhgF low > 88
Pseudomonas simiae WCS417 0.35 PS417_01210 hypothetical protein 0.61 PS417_01165 transcription accessory protein low > 88
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_1779 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.60 Pf1N1B4_1771 Transcription accessory protein (S1 RNA-binding domain) — —
Pseudomonas fluorescens SBW25 0.35 PFLU_RS01320 phosphoenolpyruvate carboxykinase 0.61 PFLU_RS01275 RNA-binding transcriptional accessory protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS01320 phosphoenolpyruvate carboxykinase 0.61 PFLU_RS01275 RNA-binding transcriptional accessory protein low > 109
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_420 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.61 PfGW456L13_428 Transcription accessory protein (S1 RNA-binding domain) low > 87
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_11775 phosphoenolpyruvate carboxykinase [ATP] 0.61 AO353_11740 DNA damage response protein (yhgF like) (from data) low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) 0.61 Psyr_0257 RNA binding S1 low > 86
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) 0.61 Psyr_0257 RNA binding S1 low > 86
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_10140 phosphoenolpyruvate carboxykinase [ATP] 0.61 AO356_10175 transcription accessory protein low > 104
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_3899 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.61 Pf6N2E2_3906 Transcription accessory protein (S1 RNA-binding domain) low > 103
Pseudomonas sp. S08-1 0.33 OH686_11060 phosphoenolpyruvate carboxykinase (ATP) 0.61 OH686_11100 Transcription accessory protein (S1 RNA-binding domain) low > 80
Pseudomonas stutzeri RCH2 0.33 Psest_3988 phosphoenolpyruvate carboxykinase (ATP) 0.59 Psest_3996 Transcriptional accessory protein low > 67

Not shown: 3 genomes with orthologs for GFF615 only; 33 genomes with orthologs for GFF611 only