Conservation of cofitness between PS417_16525 and PS417_24835 in Pseudomonas simiae WCS417

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_16525 isocitrate dehydrogenase 1.0 PS417_24835 hypothetical protein 0.27 19
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS18565 NADP-dependent isocitrate dehydrogenase 0.88 PFLU_RS26770 DedA family protein low > 109
Pseudomonas fluorescens SBW25 0.99 PFLU_RS18565 NADP-dependent isocitrate dehydrogenase 0.88 PFLU_RS26770 DedA family protein low > 109
Pseudomonas sp. RS175 0.98 PFR28_02616 Isocitrate dehydrogenase [NADP] 0.80 PFR28_03891 Protein DedA low > 88
Pseudomonas fluorescens FW300-N2E2 0.98 Pf6N2E2_289 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) 0.79 Pf6N2E2_4974 DedA protein low > 103
Pseudomonas fluorescens FW300-N2E3 0.98 AO353_27690 isocitrate dehydrogenase 0.84 AO353_06585 hypothetical protein low > 101
Pseudomonas fluorescens FW300-N2C3 0.98 AO356_22135 isocitrate dehydrogenase 0.78 AO356_15200 hypothetical protein low > 104
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_2643 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) 0.80 PfGW456L13_1337 DedA protein low > 87
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_4052 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) 0.68 Pf1N1B4_2668 DedA protein low > 87
Pseudomonas putida KT2440 0.93 PP_4011 isocitrate dehydrogenase, NADP(+)-specific 0.75 PP_0540 conserved inner membrane protein low > 96
Pseudomonas sp. S08-1 0.93 OH686_00220 isocitrate dehydrogenase, NADP-dependent 0.58 OH686_14535 DedA protein — —
Variovorax sp. OAS795 0.80 ABID97_RS16920 NADP-dependent isocitrate dehydrogenase 0.50 ABID97_RS20305 DedA family protein — —
Variovorax sp. SCN45 0.79 GFF343 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) 0.48 GFF4801 DedA protein low > 127
Ralstonia solanacearum PSI07 0.79 RPSI07_RS12425 NADP-dependent isocitrate dehydrogenase 0.47 RPSI07_RS12090 membrane protein — —
Cupriavidus basilensis FW507-4G11 0.78 RR42_RS17135 isocitrate dehydrogenase 0.49 RR42_RS17200 membrane protein — —
Escherichia coli BW25113 0.78 b1136 icd isocitrate dehydrogenase (NCBI) 0.57 b2317 dedA conserved inner membrane protein (NCBI) — —
Escherichia coli ECRC102 0.78 NIAGMN_24905 icd NADP-dependent isocitrate dehydrogenase 0.57 NIAGMN_20450 Protein DedA — —
Escherichia coli ECRC101 0.78 OKFHMN_00760 icd NADP-dependent isocitrate dehydrogenase 0.57 OKFHMN_22675 Protein DedA — —
Escherichia coli ECRC99 0.78 KEDOAH_24845 icd NADP-dependent isocitrate dehydrogenase 0.57 KEDOAH_05520 Protein DedA — —
Escherichia coli ECRC101 0.78 MCAODC_22325 icd NADP-dependent isocitrate dehydrogenase 0.57 MCAODC_13715 Protein DedA — —
Pantoea sp. MT58 0.78 IAI47_11900 NADP-dependent isocitrate dehydrogenase 0.55 IAI47_06250 DedA family protein — —
Escherichia coli ECRC98 0.78 JDDGAC_06605 icd NADP-dependent isocitrate dehydrogenase 0.57 JDDGAC_26635 Protein DedA — —
Serratia liquefaciens MT49 0.78 IAI46_10460 NADP-dependent isocitrate dehydrogenase 0.58 IAI46_17835 DedA family protein — —
Escherichia coli ECOR27 0.78 NOLOHH_20885 icd NADP-dependent isocitrate dehydrogenase 0.57 NOLOHH_14310 Protein DedA — —
Escherichia coli ECOR38 0.78 HEPCGN_24245 icd NADP-dependent isocitrate dehydrogenase 0.56 HEPCGN_21880 DedA family inner membrane protein — —
Escherichia coli Nissle 1917 0.78 ECOLIN_RS06640 NADP-dependent isocitrate dehydrogenase 0.57 ECOLIN_RS13430 DedA family protein — —
Escherichia coli ECRC62 0.78 BNILDI_19050 icd NADP-dependent isocitrate dehydrogenase 0.56 BNILDI_13230 DedA family inner membrane protein — —
Escherichia fergusonii Becca 0.78 EFB2_02839 Isocitrate dehydrogenase [NADP] 0.57 EFB2_01541 Protein DedA — —
Escherichia coli BL21 0.78 ECD_01134 isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase 0.57 ECD_02242 DedA family inner membrane protein — —
Klebsiella michiganensis M5al 0.78 BWI76_RS11330 isocitrate dehydrogenase (NADP(+)) 0.57 BWI76_RS20375 membrane protein — —
Acinetobacter radioresistens SK82 0.78 MPMX26_01012 Isocitrate dehydrogenase [NADP] 0.51 MPMX26_00073 Protein DedA low > 36
Escherichia coli HS(pFamp)R (ATCC 700891) 0.78 OHPLBJKB_02532 Isocitrate dehydrogenase [NADP] 0.57 OHPLBJKB_01388 Protein DedA — —
Burkholderia phytofirmans PsJN 0.78 BPHYT_RS15730 isocitrate dehydrogenase 0.46 BPHYT_RS03655 membrane protein low > 109
Paraburkholderia bryophila 376MFSha3.1 0.78 H281DRAFT_04085 isocitrate dehydrogenase (NADP) 0.47 H281DRAFT_04713 membrane-associated protein low > 103
Paraburkholderia sabiae LMG 24235 0.78 QEN71_RS02980 NADP-dependent isocitrate dehydrogenase 0.45 QEN71_RS26430 DedA family protein low > 153
Ralstonia solanacearum GMI1000 0.78 RS_RS12485 NADP-dependent isocitrate dehydrogenase 0.45 RS_RS12830 membrane protein — —
Ralstonia solanacearum UW163 0.78 UW163_RS08770 isocitrate dehydrogenase (NADP(+)) 0.46 UW163_RS08415 membrane protein — —
Ralstonia solanacearum IBSBF1503 0.78 RALBFv3_RS04855 isocitrate dehydrogenase (NADP(+)) 0.46 RALBFv3_RS05210 membrane protein — —
Rahnella sp. WP5 0.77 EX31_RS24590 NADP-dependent isocitrate dehydrogenase 0.60 EX31_RS19595 DedA family protein — —
Paraburkholderia graminis OAS925 0.77 ABIE53_003317 isocitrate dehydrogenase 0.48 ABIE53_000878 membrane-associated protein low > 113
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF3422 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) 0.58 GFF1933 DedA protein — —
Ralstonia sp. UNC404CL21Col 0.77 ABZR87_RS00460 NADP-dependent isocitrate dehydrogenase 0.45 ABZR87_RS00865 VTT domain-containing protein — —
Enterobacter sp. TBS_079 0.77 MPMX20_01820 Isocitrate dehydrogenase [NADP] 0.58 MPMX20_03252 Protein DedA — —
Enterobacter asburiae PDN3 0.77 EX28DRAFT_1794 isocitrate dehydrogenase (NADP) (EC 1.1.1.42) 0.58 EX28DRAFT_0287 Uncharacterized membrane-associated protein — —
Castellaniella sp019104865 MT123 0.77 ABCV34_RS07265 NADP-dependent isocitrate dehydrogenase 0.49 ABCV34_RS08780 VTT domain-containing protein — —
Erwinia tracheiphila SCR3 0.77 LU632_RS14560 icd NADP-dependent isocitrate dehydrogenase 0.58 LU632_RS07830 DedA family protein — —
Acidovorax sp. GW101-3H11 0.77 Ac3H11_2377 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) 0.49 Ac3H11_312 DedA protein — —
Pectobacterium carotovorum WPP14 0.77 HER17_RS11610 NADP-dependent isocitrate dehydrogenase 0.23 HER17_RS18730 DedA family protein — —
Dickeya dadantii 3937 0.76 DDA3937_RS11470 NADP-dependent isocitrate dehydrogenase 0.56 DDA3937_RS14460 DedA family protein — —
Dickeya dianthicola ME23 0.76 DZA65_RS11850 NADP-dependent isocitrate dehydrogenase 0.55 DZA65_RS15365 DedA family protein — —
Dickeya dianthicola 67-19 0.76 HGI48_RS11515 NADP-dependent isocitrate dehydrogenase 0.55 HGI48_RS14430 DedA family protein — —
Herbaspirillum seropedicae SmR1 0.75 HSERO_RS07015 isocitrate dehydrogenase 0.53 HSERO_RS17220 membrane protein low > 78
Hydrogenophaga sp. GW460-11-11-14-LB1 0.71 GFF4515 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) 0.50 GFF5484 DedA protein — —
Dechlorosoma suillum PS 0.70 Dsui_3296 isocitrate dehydrogenase, NADP-dependent, prokaryotic type 0.50 Dsui_1547 putative membrane-associated protein — —
Bacteroides thetaiotaomicron VPI-5482 0.57 BT2071 isocitrate dehydrogenase [NADP] (NCBI ptt file) 0.51 BT4639 conserved hypothetical protein, putative membrane protein (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.56 BACOVA_03311 dehydrogenase, isocitrate/isopropylmalate family 0.55 BACOVA_05451 SNARE-like domain protein low > 94
Phocaeicola vulgatus CL09T03C04 0.54 HMPREF1058_RS14330 NADP-dependent isocitrate dehydrogenase 0.54 HMPREF1058_RS17605 DedA family protein low > 67
Phocaeicola dorei CL03T12C01 0.54 ABI39_RS09960 NADP-dependent isocitrate dehydrogenase 0.54 ABI39_RS13800 DedA family protein low > 72
Desulfovibrio vulgaris Hildenborough JW710 0.50 DVU0477 icd isocitrate dehydrogenase, NADP-dependent (TIGR) 0.52 DVU2682 DedA family protein (TIGR) — —
Desulfovibrio vulgaris Miyazaki F 0.49 DvMF_1739 isocitrate/isopropylmalate dehydrogenase (RefSeq) 0.49 DvMF_1142 SNARE associated Golgi protein (RefSeq) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.21 CA264_17775 isocitrate dehydrogenase 0.44 CA264_09550 hypothetical protein — —

Not shown: 9 genomes with orthologs for PS417_16525 only; 5 genomes with orthologs for PS417_24835 only