Conservation of cofitness between PS417_08540 and PS417_19650 in Pseudomonas simiae WCS417

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_08540 RNA helicase 1.0 PS417_19650 chemotaxis protein CheW 0.55 3
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS08490 DEAD/DEAH box helicase 0.99 PFLU_RS21615 chemotaxis protein CheW low > 109
Pseudomonas fluorescens SBW25 0.99 PFLU_RS08490 DEAD/DEAH box helicase 0.99 PFLU_RS21615 chemotaxis protein CheW — —
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_265 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) 0.86 Pf1N1B4_3635 Positive regulator of CheA protein activity (CheW) — —
Pseudomonas fluorescens FW300-N2C3 0.97 AO356_03110 RNA helicase 0.87 AO356_03685 chemotaxis protein CheW — —
Pseudomonas fluorescens FW300-N2E2 0.97 Pf6N2E2_2450 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) 0.87 Pf6N2E2_2564 Positive regulator of CheA protein activity (CheW) — —
Pseudomonas fluorescens FW300-N2E3 0.96 AO353_19130 RNA helicase 0.90 AO353_18830 chemotaxis protein CheW — —
Pseudomonas sp. RS175 0.95 PFR28_00980 ATP-dependent RNA helicase DeaD 0.86 PFR28_00861 Chemotaxis protein CheW low > 88
Pseudomonas fluorescens GW456-L13 0.95 PfGW456L13_2247 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) 0.87 PfGW456L13_4321 Positive regulator of CheA protein activity (CheW) — —
Pseudomonas syringae pv. syringae B728a 0.95 Psyr_3619 Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal 0.92 Psyr_3428 CheW-like protein — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.95 Psyr_3619 Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal 0.92 Psyr_3428 CheW-like protein — —
Pseudomonas putida KT2440 0.90 PP_1868 ATP-dependent DEAD-box RNA helicase DeaD 0.90 PP_4332 Chemotaxis protein CheW — —
Pseudomonas stutzeri RCH2 0.84 Psest_1804 Superfamily II DNA and RNA helicases 0.91 Psest_1749 Chemotaxis signal transduction protein low > 67
Pseudomonas sp. S08-1 0.82 OH686_22545 DEAD-box ATP-dependent RNA helicase DeaD ( CshA) 0.84 OH686_02685 Positive regulator of CheA protein activity (CheW) low > 80
Rhodanobacter denitrificans MT42 0.46 LRK55_RS02405 DEAD/DEAH box helicase 0.30 LRK55_RS13390 chemotaxis protein CheW low > 63
Rhodanobacter denitrificans FW104-10B01 0.46 LRK54_RS02650 DEAD/DEAH box helicase 0.30 LRK54_RS13650 chemotaxis protein CheW low > 59
Dyella japonica UNC79MFTsu3.2 0.45 ABZR86_RS08990 DEAD/DEAH box helicase 0.25 ABZR86_RS22225 chemotaxis protein CheW low > 74
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.1841.1 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) 0.33 Xcc-8004.2882.1 Positive regulator of CheA protein activity (CheW) low > 74
Dechlorosoma suillum PS 0.44 Dsui_1351 DNA/RNA helicase, superfamily II 0.34 Dsui_3476 chemotaxis signal transduction protein — —
Alteromonas macleodii MIT1002 0.43 MIT1002_00666 Cold-shock DEAD box protein A 0.74 MIT1002_01110 Chemotaxis protein CheW low > 70
Shewanella loihica PV-4 0.42 Shew_0531 DEAD/DEAH box helicase domain-containing protein (RefSeq) 0.80 Shew_1391 CheW protein (RefSeq) low > 60
Shewanella amazonensis SB2B 0.42 Sama_0512 ATP-dependent RNA helicase DeaD (RefSeq) 0.81 Sama_2272 purine-binding chemotaxis protein CheW (RefSeq) low > 62
Rahnella sp. WP5 0.41 EX31_RS08510 DEAD/DEAH family ATP-dependent RNA helicase 0.32 EX31_RS11400 chemotaxis protein CheW low > 89
Pectobacterium carotovorum WPP14 0.41 HER17_RS18175 DEAD/DEAH family ATP-dependent RNA helicase 0.33 HER17_RS08105 chemotaxis protein CheW low > 75
Pantoea sp. MT58 0.41 IAI47_16990 DEAD/DEAH family ATP-dependent RNA helicase 0.32 IAI47_08305 chemotaxis protein CheW 0.26 71
Shewanella oneidensis MR-1 0.41 SO4034 deaD ATP-dependent RNA helicase DeaD (NCBI ptt file) 0.80 SO3202 cheW-3 purine-binding chemotaxis protein CheW (NCBI ptt file) low > 76
Dickeya dianthicola ME23 0.41 DZA65_RS03270 DEAD/DEAH family ATP-dependent RNA helicase 0.32 DZA65_RS14070 chemotaxis protein CheW — —
Erwinia tracheiphila SCR3 0.41 LU632_RS21030 DEAD/DEAH family ATP-dependent RNA helicase 0.32 LU632_RS13555 cheW chemotaxis protein CheW — —
Dickeya dianthicola 67-19 0.41 HGI48_RS03275 DEAD/DEAH family ATP-dependent RNA helicase 0.32 HGI48_RS13585 chemotaxis protein CheW low > 71
Enterobacter sp. TBS_079 0.41 MPMX20_04066 ATP-dependent RNA helicase DeaD 0.31 MPMX20_02797 Chemotaxis protein CheW low > 85
Enterobacter asburiae PDN3 0.41 EX28DRAFT_3211 Superfamily II DNA and RNA helicases 0.32 EX28DRAFT_0663 Chemotaxis signal transduction protein — —
Serratia liquefaciens MT49 0.41 IAI46_01970 DEAD/DEAH family ATP-dependent RNA helicase 0.32 IAI46_16035 chemotaxis protein CheW low > 86
Dickeya dadantii 3937 0.40 DDA3937_RS03100 DEAD/DEAH family ATP-dependent RNA helicase 0.32 DDA3937_RS13540 chemotaxis protein CheW low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.40 GFF1504 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) 0.33 GFF1668 Positive regulator of CheA protein activity (CheW) low > 78
Shewanella sp. ANA-3 0.40 Shewana3_3595 DEAD/DEAH box helicase domain-containing protein (RefSeq) 0.80 Shewana3_1367 CheW protein (RefSeq) low > 73
Escherichia coli ECRC62 0.39 BNILDI_01580 deaD ATP-dependent RNA helicase DeaD 0.32 BNILDI_15355 cheW chemotaxis protein CheW — —
Escherichia coli Nissle 1917 0.39 ECOLIN_RS18165 ATP-dependent RNA helicase DeaD 0.32 ECOLIN_RS10775 chemotaxis protein CheW — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_00538 ATP-dependent RNA helicase DeaD 0.32 OHPLBJKB_01841 Chemotaxis protein CheW low > 73
Escherichia coli BL21 0.39 ECD_03029 ATP-dependent RNA helicase 0.32 ECD_01858 purine-binding chemotaxis protein — —
Escherichia coli ECOR27 0.39 NOLOHH_09955 deaD ATP-dependent RNA helicase DeaD 0.32 NOLOHH_16565 cheW chemotaxis protein CheW — —
Escherichia coli BW25113 0.39 b3162 deaD inducible ATP-independent RNA helicase (VIMSS) 0.32 b1887 cheW purine-binding chemotaxis protein (NCBI) low > 76
Escherichia fergusonii Becca 0.39 EFB2_00661 ATP-dependent RNA helicase DeaD 0.32 EFB2_02056 Chemotaxis protein CheW low > 86
Escherichia coli ECRC102 0.39 NIAGMN_15915 deaD ATP-dependent RNA helicase DeaD 0.32 NIAGMN_01935 cheW chemotaxis protein CheW — —
Escherichia coli ECRC101 0.39 MCAODC_08675 deaD ATP-dependent RNA helicase DeaD 0.32 MCAODC_19280 cheW chemotaxis protein CheW — —
Escherichia coli ECRC101 0.39 OKFHMN_18155 deaD ATP-dependent RNA helicase DeaD 0.32 OKFHMN_26125 cheW chemotaxis protein CheW — —
Escherichia coli ECRC98 0.39 JDDGAC_21780 deaD ATP-dependent RNA helicase DeaD 0.32 JDDGAC_00700 cheW chemotaxis protein CheW — —
Escherichia coli ECRC99 0.39 KEDOAH_09995 deaD ATP-dependent RNA helicase DeaD 0.32 KEDOAH_01980 cheW chemotaxis protein CheW — —
Escherichia coli ECOR38 0.39 HEPCGN_17030 deaD ATP-dependent RNA helicase DeaD 0.32 HEPCGN_04545 cheW chemotaxis protein CheW low > 85
Vibrio cholerae E7946 ATCC 55056 0.37 CSW01_18185 DEAD/DEAH box family ATP-dependent RNA helicase 0.70 CSW01_10300 chemotaxis protein CheW low > 62
Desulfovibrio vulgaris Hildenborough JW710 0.33 DVU3310 deaD ATP-dependent RNA helicase, DEAD/DEAH family (TIGR) 0.36 DVU1904 cheW-2 chemotaxis protein CheW (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.32 DvMF_2125 DEAD/DEAH box helicase domain protein (RefSeq) 0.36 DvMF_0792 CheW protein (RefSeq) — —
Methanococcus maripaludis S2 0.32 MMP_RS02420 DEAD/DEAH box helicase 0.27 MMP_RS04800 chemotaxis protein CheW — —
Methanococcus maripaludis JJ 0.32 MMJJ_RS02855 DEAD/DEAH box helicase 0.27 MMJJ_RS00335 chemotaxis protein CheW low > 28

Not shown: 15 genomes with orthologs for PS417_08540 only; 30 genomes with orthologs for PS417_19650 only