Conservation of cofitness between GFF4305 and GFF3567 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF4305 tRNA-guanine transglycosylase (EC 2.4.2.29) 1.0 GFF3567 Pyruvate kinase (EC 2.7.1.40) 0.82 6
Enterobacter sp. TBS_079 0.99 MPMX20_00997 Queuine tRNA-ribosyltransferase 0.97 MPMX20_01951 Pyruvate kinase I low > 85
Enterobacter asburiae PDN3 0.99 EX28DRAFT_2565 tRNA-guanine transglycosylase 0.97 EX28DRAFT_1679 pyruvate kinase 0.65 18
Klebsiella michiganensis M5al 0.99 BWI76_RS06300 tRNA guanosine(34) transglycosylase Tgt 0.96 BWI76_RS16960 pyruvate kinase — —
Escherichia coli ECRC102 0.98 NIAGMN_06560 tgt tRNA guanosine(34) transglycosylase Tgt 0.96 NIAGMN_00775 pykF pyruvate kinase PykF — —
Escherichia coli ECOR27 0.98 NOLOHH_01440 tgt tRNA guanosine(34) transglycosylase Tgt 0.96 NOLOHH_17810 pykF pyruvate kinase PykF low > 75
Escherichia coli ECRC101 0.98 MCAODC_27730 tgt tRNA guanosine(34) transglycosylase Tgt 0.96 MCAODC_18120 pykF pyruvate kinase PykF — —
Escherichia coli ECRC98 0.98 JDDGAC_12160 tgt tRNA guanosine(34) transglycosylase Tgt 0.96 JDDGAC_01865 pykF pyruvate kinase PykF — —
Escherichia coli ECOR38 0.98 HEPCGN_07145 tgt tRNA guanosine(34) transglycosylase Tgt 0.96 HEPCGN_05675 pykF pyruvate kinase PykF — —
Escherichia coli ECRC62 0.98 BNILDI_22855 tgt tRNA guanosine(34) transglycosylase Tgt 0.96 BNILDI_16600 pykF pyruvate kinase PykF low > 75
Escherichia coli Nissle 1917 0.98 ECOLIN_RS02445 tRNA guanosine(34) transglycosylase Tgt 0.96 ECOLIN_RS09375 pyruvate kinase PykF — —
Escherichia coli BW25113 0.98 b0406 tgt queuine tRNA-ribosyltransferase (NCBI) 0.96 b1676 pykF pyruvate kinase (NCBI) low > 76
Escherichia coli BL21 0.98 ECD_00354 tRNA-guanine transglycosylase 0.96 ECD_01645 pyruvate kinase I low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.98 OHPLBJKB_03270 Queuine tRNA-ribosyltransferase 0.96 OHPLBJKB_02048 Pyruvate kinase I low > 73
Escherichia coli ECRC99 0.98 KEDOAH_19460 tgt tRNA guanosine(34) transglycosylase Tgt 0.96 KEDOAH_00820 pykF pyruvate kinase PykF — —
Escherichia fergusonii Becca 0.98 EFB2_03651 Queuine tRNA-ribosyltransferase 0.96 EFB2_02316 Pyruvate kinase I low > 86
Escherichia coli ECRC100 0.98 OKFHMN_08505 tgt tRNA guanosine(34) transglycosylase Tgt 0.96 OKFHMN_27290 pykF pyruvate kinase PykF — —
Pantoea sp. MT58 0.95 IAI47_14805 tRNA guanosine(34) transglycosylase Tgt 0.88 IAI47_10840 pyruvate kinase PykF low > 76
Dickeya dadantii 3937 0.93 DDA3937_RS05470 tRNA guanosine(34) transglycosylase Tgt 0.87 DDA3937_RS12740 pyruvate kinase PykF low > 74
Pectobacterium carotovorum WPP14 0.92 HER17_RS15990 tRNA guanosine(34) transglycosylase Tgt 0.86 HER17_RS08960 pyruvate kinase PykF low > 75
Dickeya dianthicola ME23 0.92 DZA65_RS05855 tRNA guanosine(34) transglycosylase Tgt 0.86 DZA65_RS13270 pyruvate kinase PykF low > 75
Dickeya dianthicola 67-19 0.92 HGI48_RS05530 tRNA guanosine(34) transglycosylase Tgt 0.86 HGI48_RS12805 pyruvate kinase PykF low > 71
Rahnella sp. WP5 0.92 EX31_RS22095 tRNA guanosine(34) transglycosylase Tgt 0.89 EX31_RS13870 pyruvate kinase PykF low > 89
Erwinia tracheiphila SCR3 0.92 LU632_RS18500 tgt tRNA guanosine(34) transglycosylase Tgt 0.87 LU632_RS11145 pykF pyruvate kinase PykF low > 74
Serratia liquefaciens MT49 0.92 IAI46_04840 tRNA guanosine(34) transglycosylase Tgt 0.89 IAI46_11185 pyruvate kinase PykF low > 86
Vibrio cholerae E7946 ATCC 55056 0.85 CSW01_03850 tRNA guanosine(34) transglycosylase Tgt 0.77 CSW01_02575 pyruvate kinase PykF — —
Pseudomonas sp. RS175 0.73 PFR28_00277 Queuine tRNA-ribosyltransferase 0.31 PFR28_03114 Pyruvate kinase low > 88
Pseudomonas fluorescens FW300-N2E3 0.73 AO353_15790 queuine tRNA-ribosyltransferase 0.31 AO353_01940 pyruvate kinase — —
Pseudomonas fluorescens GW456-L13 0.73 PfGW456L13_4882 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.31 PfGW456L13_4299 Pyruvate kinase (EC 2.7.1.40) low > 87
Pseudomonas fluorescens FW300-N1B4 0.73 Pf1N1B4_3006 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.31 Pf1N1B4_3657 Pyruvate kinase (EC 2.7.1.40) low > 87
Pseudomonas fluorescens FW300-N2E2 0.72 Pf6N2E2_3198 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.30 Pf6N2E2_5835 Pyruvate kinase (EC 2.7.1.40) low > 103
Pseudomonas fluorescens FW300-N2C3 0.72 AO356_06690 queuine tRNA-ribosyltransferase 0.31 AO356_19600 pyruvate kinase low > 104
Pseudomonas putida KT2440 0.72 PP_0833 queuine tRNA-ribosyltransferase 0.32 PP_4301 Pyruvate kinase low > 96
Pseudomonas fluorescens SBW25 0.72 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.31 PFLU_RS08850 pyruvate kinase low > 109
Pseudomonas fluorescens SBW25-INTG 0.72 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.31 PFLU_RS08850 pyruvate kinase low > 109
Pseudomonas simiae WCS417 0.72 PS417_23245 queuine tRNA-ribosyltransferase 0.31 PS417_08790 pyruvate kinase — —
Cupriavidus basilensis FW507-4G11 0.66 RR42_RS17400 queuine tRNA-ribosyltransferase 0.33 RR42_RS19870 pyruvate kinase low > 128
Castellaniella sp019104865 MT123 0.64 ABCV34_RS15365 tRNA guanosine(34) transglycosylase Tgt 0.32 ABCV34_RS12115 pyruvate kinase low > 48
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS05685 tRNA guanosine(34) transglycosylase Tgt 0.32 RALBFv3_RS17015 pyruvate kinase low > 76
Rhodospirillum rubrum S1H 0.55 Rru_A0280 Queuine tRNA-ribosyltransferase (NCBI) 0.32 Rru_A2465 Pyruvate kinase (NCBI) — —
Azospirillum brasilense Sp245 0.52 AZOBR_RS06295 queuine tRNA-ribosyltransferase 0.31 AZOBR_RS06845 pyruvate kinase low > 97
Azospirillum sp. SherDot2 0.52 MPMX19_01697 Queuine tRNA-ribosyltransferase 0.33 MPMX19_04074 Pyruvate kinase low > 112
Desulfovibrio vulgaris Miyazaki F 0.51 DvMF_2757 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.28 DvMF_0965 pyruvate kinase (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.51 DVU0726 tgt queuine tRNA-ribosyltransferase (TIGR) 0.27 DVU2514 pyk pyruvate kinase (TIGR) low > 55
Fusobacterium nucleatum SB010 0.51 HUW76_09025 tRNA guanosine(34) transglycosylase Tgt 0.62 HUW76_00910 pyruvate kinase PykF — —
Sphingomonas koreensis DSMZ 15582 0.50 Ga0059261_1017 tRNA-guanine transglycosylase 0.30 Ga0059261_0685 pyruvate kinase low > 68
Caulobacter crescentus NA1000 0.50 CCNA_01659 queuine tRNA-ribosyltransferase 0.28 CCNA_02130 pyruvate kinase low > 66
Caulobacter crescentus NA1000 Δfur 0.50 CCNA_01659 queuine tRNA-ribosyltransferase 0.28 CCNA_02130 pyruvate kinase low > 67
Bosea sp. OAE506 0.50 ABIE41_RS18290 tRNA guanosine(34) transglycosylase Tgt 0.31 ABIE41_RS06285 pyruvate kinase low > 77
Brevundimonas sp. GW460-12-10-14-LB2 0.50 A4249_RS02905 tRNA guanosine(34) transglycosylase Tgt 0.26 A4249_RS02440 pyruvate kinase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.47 ABZR88_RS13980 tRNA guanosine(34) transglycosylase Tgt 0.33 ABZR88_RS01590 pyruvate kinase — —
Parabacteroides merdae CL09T00C40 0.47 HMPREF1078_RS01080 tRNA guanosine(34) transglycosylase Tgt 0.34 HMPREF1078_RS04695 pyruvate kinase low > 61
Echinicola vietnamensis KMM 6221, DSM 17526 0.47 Echvi_2049 tRNA-guanine transglycosylase, queuosine-34-forming 0.35 Echvi_2317 pyruvate kinase low > 79
Pontibacter actiniarum KMM 6156, DSM 19842 0.46 CA264_00655 tRNA-guanine(34) transglycosylase 0.31 CA264_00725 pyruvate kinase low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.46 CA265_RS13030 tRNA guanosine(34) transglycosylase Tgt 0.33 CA265_RS18740 pyruvate kinase — —
Bacteroides stercoris CC31F 0.46 HMPREF1181_RS14345 tRNA guanosine(34) transglycosylase Tgt 0.35 HMPREF1181_RS01240 pyruvate kinase low > 56
Phocaeicola dorei CL03T12C01 0.46 ABI39_RS16515 tRNA guanosine(34) transglycosylase Tgt 0.34 ABI39_RS07010 pyruvate kinase low > 72
Phocaeicola vulgatus CL09T03C04 0.46 HMPREF1058_RS01215 tRNA guanosine(34) transglycosylase Tgt 0.34 HMPREF1058_RS09670 pyruvate kinase — —
Bacteroides thetaiotaomicron VPI-5482 0.44 BT0835 tRNA-guanine transglycosylase (NCBI ptt file) 0.35 BT2841 pyruvate kinase (NCBI ptt file) — —
Bacteroides ovatus ATCC 8483 0.44 BACOVA_02570 tRNA-guanine transglycosylase 0.36 BACOVA_02121 pyruvate kinase — —
Bifidobacterium breve UCC2003 0.34 BBR_RS10715 tRNA-guanine(34) transglycosylase 0.33 BBR_RS14295 pyruvate kinase — —

Not shown: 39 genomes with orthologs for GFF4305 only; 3 genomes with orthologs for GFF3567 only