| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas stutzeri RCH2 | 1.0 | Psest_3338 | | Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain | 1.0 | Psest_2863 | | Transcriptional regulator | 0.41 | 2 |
| Pseudomonas fluorescens GW456-L13 | 0.91 | PfGW456L13_5048 | | Dna binding response regulator PrrA (RegA) | 0.77 | PfGW456L13_4660 | | LysR family transcriptional regulator PA3398 | 0.32 | 48 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.91 | Psyr_4230 | | Helix-turn-helix, Fis-type | 0.82 | Psyr_1386 | | transcriptional regulator, LysR family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.91 | Psyr_4230 | | Helix-turn-helix, Fis-type | 0.82 | Psyr_1386 | | transcriptional regulator, LysR family | low | > 86 |
| Pseudomonas fluorescens SBW25 | 0.86 | PFLU_RS04140 | | response regulator transcription factor | 0.82 | PFLU_RS05920 | | LysR family transcriptional regulator | low | > 109 |
| Pseudomonas sp. RS175 | 0.86 | PFR28_00137 | | Photosynthetic apparatus regulatory protein RegA | 0.83 | PFR28_00480 | | HTH-type transcriptional activator CmpR | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.86 | PFLU_RS04140 | | response regulator transcription factor | 0.82 | PFLU_RS05920 | | LysR family transcriptional regulator | low | > 109 |
| Pseudomonas simiae WCS417 | 0.86 | PS417_04100 | | chemotaxis protein CheY | 0.82 | PS417_05850 | | LysR family transcriptional regulator | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.86 | Pf1N1B4_1115 | | Dna binding response regulator PrrA (RegA) | 0.82 | Pf1N1B4_3152 | | LysR family transcriptional regulator PA3398 | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.86 | AO353_05335 | | chemotaxis protein CheY | 0.82 | AO353_16845 | | LysR family transcriptional regulator | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.85 | Pf6N2E2_3302 | | Dna binding response regulator PrrA (RegA) | 0.82 | Pf6N2E2_2984 | | LysR family transcriptional regulator PA3398 | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.85 | AO356_07205 | | chemotaxis protein CheY | 0.82 | AO356_05630 | | LysR family transcriptional regulator | — | — |
| Pseudomonas putida KT2440 | 0.84 | PP_0888 | | Photosynthetic apparatus regulatory protein RegA | 0.81 | PP_1637 | | Transcriptional regulator, LysR family | low | > 96 |
| Pseudomonas sp. S08-1 | 0.84 | OH686_08680 | | Dna binding response regulator PrrA (RegA) | 0.84 | OH686_18820 | | Transcriptional regulator, LysR family | low | > 80 |
| Dechlorosoma suillum PS | 0.59 | Dsui_1180 | | response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain protein | 0.61 | Dsui_2257 | | transcriptional regulator | low | > 51 |
| Dyella japonica UNC79MFTsu3.2 | 0.55 | ABZR86_RS10115 | | response regulator transcription factor | 0.36 | ABZR86_RS19780 | | LysR family transcriptional regulator | — | — |
| Rhodanobacter sp. FW510-T8 | 0.54 | OKGIIK_10900 | | two-component system response regulator | 0.35 | OKGIIK_02230 | lysR | LysR family transcriptional regulator | — | — |
| Rhodanobacter denitrificans MT42 | 0.53 | LRK55_RS03810 | | response regulator transcription factor | 0.35 | LRK55_RS12535 | | LysR family transcriptional regulator | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.53 | LRK54_RS04040 | | response regulator transcription factor | 0.35 | LRK54_RS12835 | | LysR family transcriptional regulator | — | — |
| Herbaspirillum seropedicae SmR1 | 0.49 | HSERO_RS13000 | | chemotaxis protein CheY | 0.35 | HSERO_RS21575 | | transcriptional regulator | low | > 78 |
| Cupriavidus basilensis FW507-4G11 | 0.47 | RR42_RS01085 | | chemotaxis protein CheY | 0.31 | RR42_RS13965 | | LysR family transcriptional regulator | low | > 128 |
| Dinoroseobacter shibae DFL-12 | 0.47 | Dshi_3430 | | two component transcriptional regulator, Fis family (RefSeq) | 0.12 | Dshi_1431 | | transcriptional regulator, LysR family (RefSeq) | — | — |
| Ralstonia sp. UNC404CL21Col | 0.46 | ABZR87_RS05135 | | response regulator transcription factor | 0.35 | ABZR87_RS10365 | | LysR family transcriptional regulator | — | — |
| Ralstonia solanacearum GMI1000 | 0.46 | RS_RS00200 | | DNA-binding response regulator | 0.35 | RS_RS05515 | | LysR family transcriptional regulator | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.45 | RPSI07_RS23750 | | DNA-binding response regulator | 0.35 | RPSI07_RS18655 | | LysR family transcriptional regulator | low | > 81 |
| Marinobacter adhaerens HP15 | 0.45 | HP15_3981 | | two component transcriptional regulator, Fis family | 0.43 | HP15_2201 | | transcriptional regulator, LysR family | low | > 73 |
| Ralstonia solanacearum IBSBF1503 | 0.45 | RALBFv3_RS09615 | | DNA-binding response regulator | 0.35 | RALBFv3_RS14705 | | LysR family transcriptional regulator | low | > 76 |
| Ralstonia solanacearum UW163 | 0.45 | UW163_RS03965 | | DNA-binding response regulator | 0.35 | UW163_RS12175 | | LysR family transcriptional regulator | — | — |
| Rhizobium sp. OAE497 | 0.45 | ABIE40_RS19505 | | ActR/PrrA/RegA family redox response regulator transcription factor | 0.22 | ABIE40_RS15535 | | LysR family transcriptional regulator | low | > 107 |
| Agrobacterium fabrum C58 | 0.44 | Atu0050 | | two component response regulator | 0.24 | Atu0672 | | transcriptional regulator, LysR family | low | > 89 |
| Shewanella amazonensis SB2B | 0.43 | Sama_3186 | | response regulator receiver protein (RefSeq) | 0.35 | Sama_1882 | | LysR family transcriptional regulator (RefSeq) | low | > 62 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.43 | Xcc-8004.3041.1 | | Dna binding response regulator PrrA (RegA) | 0.33 | Xcc-8004.979.1 | | LysR family transcriptional regulator YeiE | low | > 74 |
| Rhodopseudomonas palustris CGA009 | 0.43 | TX73_002960 | | ActR/PrrA/RegA family redox response regulator transcription factor | 0.25 | TX73_009100 | | LysR family transcriptional regulator | low | > 86 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.42 | A4249_RS04475 | | response regulator transcription factor | 0.24 | A4249_RS01115 | | LysR substrate-binding domain-containing protein | low | > 48 |
| Azospirillum sp. SherDot2 | 0.42 | MPMX19_06181 | | Photosynthetic apparatus regulatory protein RegA | 0.23 | MPMX19_00813 | | HTH-type transcriptional regulator CysL | — | — |
| Variovorax sp. SCN45 | 0.41 | GFF5672 | | Dna binding response regulator PrrA (RegA) | 0.31 | GFF3160 | | Transcriptional regulator YeiE, LysR family | low | > 127 |
| Shewanella sp. ANA-3 | 0.41 | Shewana3_3707 | | response regulator receiver protein (RefSeq) | 0.31 | Shewana3_2367 | | LysR family transcriptional regulator (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.41 | SO4172 | | DNA-binding response regulator (NCBI ptt file) | 0.32 | SO2561 | | transcriptional regulator, LysR family (NCBI ptt file) | low | > 76 |
| Shewanella loihica PV-4 | 0.40 | Shew_3342 | | two component Fis family transcriptional regulator (RefSeq) | 0.33 | Shew_2531 | | LysR family transcriptional regulator (RefSeq) | low | > 60 |
| Azospirillum brasilense Sp245 | 0.40 | AZOBR_RS23150 | | chemotaxis protein CheY | 0.26 | AZOBR_RS32560 | | LysR family transcriptional regulator | low | > 97 |
Not shown: 14 genomes with orthologs for Psest_3338 only; 44 genomes with orthologs for Psest_2863 only