| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 1.0 | GFF4142 | | transcriptional regulator, Crp/Fnr family | 1.0 | GFF2459 | | Aspartate racemase (EC 5.1.1.13) | 0.44 | 6 |
| Acidovorax sp. GW101-3H11 | 0.81 | Ac3H11_975 | | transcriptional regulator, Crp/Fnr family | 0.13 | Ac3H11_1641 | | Aspartate racemase (EC 5.1.1.13) | — | — |
| Pseudomonas sp. RS175 | 0.55 | PFR28_02314 | | Fumarate and nitrate reduction regulatory protein | 0.28 | PFR28_02199 | | L-aspartate/glutamate-specific racemase | low | > 88 |
| Pseudomonas simiae WCS417 | 0.54 | PS417_15825 | | Crp/Fnr family transcriptional regulator | 0.23 | PS417_13940 | | racemase | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.53 | Pf1N1B4_4177 | | transcriptional regulator, Crp/Fnr family | 0.25 | Pf1N1B4_4650 | | Aspartate racemase (EC 5.1.1.13) | low | > 87 |
| Cupriavidus basilensis FW507-4G11 | 0.53 | RR42_RS09585 | | Crp/Fnr family transcriptional regulator | 0.68 | RR42_RS22750 | | aspartate racemase | low | > 128 |
| Ralstonia solanacearum GMI1000 | 0.52 | RS_RS06430 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.20 | RS_RS01050 | | aspartate/glutamate racemase family protein | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.51 | H281DRAFT_01640 | | transcriptional regulator, Crp/Fnr family | 0.26 | H281DRAFT_00459 | | aspartate racemase | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.50 | BPHYT_RS31300 | | Crp/Fnr family transcriptional regulator | 0.26 | BPHYT_RS12885 | | aspartate racemase | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.48 | ABIE53_004332 | | CRP/FNR family transcriptional regulator | 0.27 | ABIE53_002800 | | aspartate racemase | low | > 113 |
| Castellaniella sp019104865 MT123 | 0.45 | ABCV34_RS06835 | | helix-turn-helix domain-containing protein | 0.24 | ABCV34_RS07215 | | aspartate/glutamate racemase family protein | low | > 48 |
| Escherichia coli ECRC101 | 0.43 | OKFHMN_02240 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | 0.25 | OKFHMN_19935 | ygeA | amino acid racemase | — | — |
| Escherichia coli ECOR27 | 0.43 | NOLOHH_19940 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | 0.25 | NOLOHH_11820 | ygeA | amino acid racemase | low | > 57 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.43 | OHPLBJKB_02348 | | Fumarate and nitrate reduction regulatory protein | 0.25 | OHPLBJKB_00889 | | Putative racemase YgeA | low | > 73 |
| Escherichia coli ECRC99 | 0.43 | KEDOAH_26530 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | 0.25 | KEDOAH_08195 | ygeA | amino acid racemase | — | — |
| Escherichia coli ECOR38 | 0.43 | HEPCGN_25925 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | 0.25 | HEPCGN_19575 | ygeA | amino acid racemase | low | > 85 |
| Escherichia coli Nissle 1917 | 0.43 | ECOLIN_RS08005 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.25 | ECOLIN_RS15940 | | amino acid racemase | low | > 52 |
| Escherichia fergusonii Becca | 0.43 | EFB2_02593 | | Fumarate and nitrate reduction regulatory protein | 0.25 | EFB2_01043 | | L-aspartate/glutamate-specific racemase | low | > 86 |
| Escherichia coli ECRC98 | 0.43 | JDDGAC_04785 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | 0.25 | JDDGAC_23600 | ygeA | amino acid racemase | — | — |
| Escherichia coli ECRC62 | 0.43 | BNILDI_18090 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | 0.25 | BNILDI_10300 | ygeA | amino acid racemase | — | — |
| Escherichia coli BW25113 | 0.43 | b1334 | fnr | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | 0.24 | b2840 | ygeA | predicted racemase (NCBI) | low | > 76 |
| Escherichia coli ECRC102 | 0.43 | NIAGMN_26410 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | 0.25 | NIAGMN_17705 | ygeA | amino acid racemase | — | — |
| Escherichia coli ECRC101 | 0.42 | MCAODC_16030 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | 0.25 | MCAODC_10460 | ygeA | amino acid racemase | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.42 | GFF2656 | | Fumarate and nitrate reduction regulatory protein | 0.25 | GFF1325 | | Aspartate racemase (EC 5.1.1.13) | low | > 78 |
| Klebsiella michiganensis M5al | 0.42 | BWI76_RS16185 | | transcriptional regulator FNR | 0.25 | BWI76_RS23370 | | aspartate/glutamate racemase | — | — |
| Pseudomonas fluorescens SBW25 | 0.41 | PFLU_RS22395 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.22 | PFLU_RS14675 | | aspartate/glutamate racemase family protein | low | > 109 |
| Pantoea sp. MT58 | 0.41 | IAI47_09580 | | FNR family transcription factor | 0.24 | IAI47_18995 | | aspartate/glutamate racemase family protein | low | > 76 |
| Enterobacter sp. TBS_079 | 0.41 | MPMX20_02035 | | Fumarate and nitrate reduction regulatory protein | 0.26 | MPMX20_03707 | | L-aspartate/glutamate-specific racemase | low | > 85 |
| Enterobacter asburiae PDN3 | 0.41 | EX28DRAFT_1540 | | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases | 0.28 | EX28DRAFT_2918 | | aspartate racemase | low | > 76 |
| Alteromonas macleodii MIT1002 | 0.41 | MIT1002_02137 | | Fumarate and nitrate reduction regulatory protein | 0.21 | MIT1002_04020 | | Aspartate racemase | low | > 70 |
| Shewanella amazonensis SB2B | 0.41 | Sama_1799 | | fumarate/nitrate reduction transcriptional regulator (RefSeq) | 0.25 | Sama_2886 | | hypothetical protein (RefSeq) | low | > 62 |
| Pseudomonas fluorescens SBW25-INTG | 0.41 | PFLU_RS22395 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.22 | PFLU_RS14675 | | aspartate/glutamate racemase family protein | low | > 109 |
| Pectobacterium carotovorum WPP14 | 0.41 | HER17_RS10525 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.23 | HER17_RS15295 | | aspartate/glutamate racemase family protein | low | > 75 |
| Serratia liquefaciens MT49 | 0.41 | IAI46_13260 | | FNR family transcription factor | 0.24 | IAI46_18225 | | aspartate/glutamate racemase family protein | low | > 86 |
| Pseudomonas sp. S08-1 | 0.41 | OH686_02245 | | Fumarate and nitrate reduction regulatory protein | 0.24 | OH686_18340 | | Aspartate racemase | 0.61 | 10 |
| Rahnella sp. WP5 | 0.41 | EX31_RS07200 | | FNR family transcription factor | 0.23 | EX31_RS20045 | | aspartate/glutamate racemase family protein | low | > 89 |
| Marinobacter adhaerens HP15 | 0.40 | HP15_634 | | transcriptional regulator, Crp/Fnr family | 0.28 | HP15_1403 | | aspartate racemase | low | > 73 |
| Lysobacter sp. OAE881 | 0.40 | ABIE51_RS03805 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.23 | ABIE51_RS00965 | | aspartate/glutamate racemase family protein | low | > 62 |
| Rhodanobacter denitrificans MT42 | 0.35 | LRK55_RS13815 | | cyclic nucleotide-binding domain-containing protein | 0.24 | LRK55_RS05145 | | aspartate/glutamate racemase family protein | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.35 | LRK54_RS14095 | | cyclic nucleotide-binding domain-containing protein | 0.23 | LRK54_RS05370 | | aspartate/glutamate racemase family protein | low | > 59 |
| Variovorax sp. SCN45 | 0.29 | GFF6947 | | transcriptional regulator, Crp/Fnr family | 0.65 | GFF5866 | | Aspartate racemase (EC 5.1.1.13) | low | > 127 |
| Dyella japonica UNC79MFTsu3.2 | 0.29 | ABZR86_RS04345 | | cyclic nucleotide-binding domain-containing protein | 0.23 | ABZR86_RS09275 | | aspartate/glutamate racemase family protein | low | > 74 |
| Azospirillum sp. SherDot2 | 0.28 | MPMX19_00212 | | Nitrogen fixation regulation protein FixK | 0.24 | MPMX19_02330 | | L-aspartate/glutamate-specific racemase | low | > 112 |
| Azospirillum brasilense Sp245 | 0.27 | AZOBR_RS01145 | | Crp/Fnr family transcriptional regulator | 0.23 | AZOBR_RS21090 | | aspartate racemase | low | > 97 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.24 | Xcc-8004.2952.1 | | transcriptional regulator, Crp/Fnr family | 0.27 | Xcc-8004.3035.1 | | Aspartate racemase (EC 5.1.1.13) | low | > 74 |
| Agrobacterium fabrum C58 | 0.19 | Atu1602 | | transcriptional activator, Crp family | 0.22 | Atu3073 | | aspartate racemase | low | > 89 |
| Rhizobium sp. OAE497 | 0.17 | ABIE40_RS06085 | | Crp/Fnr family transcriptional regulator | 0.22 | ABIE40_RS11390 | | aspartate/glutamate racemase family protein | low | > 107 |
| Caulobacter crescentus NA1000 | 0.17 | CCNA_00789 | | hypoxia transcriptional regulator FixK | 0.23 | CCNA_03387 | | aspartate racemase | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.17 | CCNA_00789 | | hypoxia transcriptional regulator FixK | 0.23 | CCNA_03387 | | aspartate racemase | low | > 67 |
| Sinorhizobium meliloti 1021 | 0.16 | SMa1225 | | transcriptional regulator FixK | 0.16 | SMc01404 | | aspartate racemase | — | — |
| Bosea sp. OAE506 | 0.16 | ABIE41_RS04120 | | Crp/Fnr family transcriptional regulator | 0.26 | ABIE41_RS12895 | | aspartate/glutamate racemase family protein | low | > 77 |
| Dinoroseobacter shibae DFL-12 | 0.15 | Dshi_0660 | | transcriptional regulator, Crp/Fnr family (RefSeq) | 0.23 | Dshi_2199 | | aspartate racemase (RefSeq) | low | > 64 |
Not shown: 31 genomes with orthologs for GFF4142 only; 6 genomes with orthologs for GFF2459 only