Conservation of cofitness between PS417_16535 and PS417_01180 in Pseudomonas simiae WCS417

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_16535 NUDIX hydrolase 1.0 PS417_01180 ribosomal protein S6 modification protein 0.16 17
Pseudomonas fluorescens SBW25-INTG 0.96 PFLU_RS18575 NUDIX hydrolase 0.99 PFLU_RS01290 30S ribosomal protein S6--L-glutamate ligase low > 109
Pseudomonas fluorescens SBW25 0.96 PFLU_RS18575 NUDIX hydrolase 0.99 PFLU_RS01290 30S ribosomal protein S6--L-glutamate ligase low > 109
Pseudomonas fluorescens FW300-N2C3 0.86 AO356_22115 NUDIX hydrolase 0.98 AO356_10160 ribosomal protein S6 modification protein low > 104
Pseudomonas fluorescens FW300-N2E3 0.86 AO353_27700 NUDIX hydrolase 0.99 AO353_11755 ribosomal protein S6 modification protein low > 101
Pseudomonas sp. RS175 0.86 PFR28_02618 Phosphatase NudJ 0.98 PFR28_04870 Ribosomal protein S6--L-glutamate ligase low > 88
Pseudomonas fluorescens FW300-N2E2 0.86 Pf6N2E2_287 Nudix-like NDP and NTP phosphohydrolase YmfB 0.98 Pf6N2E2_3903 Ribosomal protein S6 glutaminyl transferase low > 103
Pseudomonas sp. DMC3 0.85 GFF1520 Phosphatase NudJ 0.98 GFF4181 Ribosomal protein S6--L-glutamate ligase low > 89
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_2640 Nudix-like NDP and NTP phosphohydrolase YmfB 0.99 PfGW456L13_425 Ribosomal protein S6 glutaminyl transferase low > 87
Pseudomonas fluorescens FW300-N1B4 0.83 Pf1N1B4_4049 Nudix-like NDP and NTP phosphohydrolase YmfB 0.99 Pf1N1B4_1774 Ribosomal protein S6 glutaminyl transferase low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.79 Psyr_3189 NUDIX hydrolase 0.96 Psyr_0173 SSU ribosomal protein S6P modification protein low > 86
Pseudomonas syringae pv. syringae B728a 0.79 Psyr_3189 NUDIX hydrolase 0.96 Psyr_0173 SSU ribosomal protein S6P modification protein low > 86
Pseudomonas stutzeri RCH2 0.74 Psest_2022 ADP-ribose pyrophosphatase 0.95 Psest_3993 alpha-L-glutamate ligases, RimK family low > 67
Pseudomonas sp. S08-1 0.72 OH686_00215 Nudix-like NDP and NTP phosphohydrolase NudJ 0.94 OH686_11080 Ribosomal protein S6--L-glutamate ligase low > 80
Pseudomonas aeruginosa PA14 0.71 IKLFDK_13175 NUDIX hydrolase 0.94 IKLFDK_27490 30S ribosomal protein S6--L-glutamate ligase low > 101
Pseudomonas putida KT2440 0.70 PP_4013 MutT/nudix family protein 0.96 PP_0248 Probable alpha-L-glutamate ligase low > 96
Pseudomonas sp. BP01 0.70 JOY50_RS06580 NUDIX hydrolase 0.96 JOY50_RS18340 rimK 30S ribosomal protein S6--L-glutamate ligase low > 84
Pseudomonas sp. SVBP6 0.69 COO64_RS24225 NUDIX hydrolase 0.97 COO64_RS00690 rimK 30S ribosomal protein S6--L-glutamate ligase low > 93
Xanthomonas campestris pv. campestris strain 8004 0.53 Xcc-8004.2757.1 Nudix-like NDP and NTP phosphohydrolase YmfB 0.59 Xcc-8004.1332.1 Ribosomal protein S6 glutaminyl transferase low > 74
Marinobacter adhaerens HP15 0.48 HP15_2085 MutT/nudix family protein 0.76 HP15_719 alpha-L-glutamate ligase, RimK family low > 73
Lysobacter sp. OAE881 0.46 ABIE51_RS11505 NUDIX hydrolase 0.56 ABIE51_RS16520 30S ribosomal protein S6--L-glutamate ligase 0.71 1
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS02190 NUDIX hydrolase 0.58 ABZR86_RS11620 30S ribosomal protein S6--L-glutamate ligase low > 74
Methylophilus sp. DMC18 0.46 GFF2551 Phosphatase NudJ 0.14 GFF680 hypothetical protein low > 43
Rhodanobacter sp000427505 FW510-R12 0.45 LRK53_RS09720 NUDIX hydrolase 0.55 LRK53_RS16530 30S ribosomal protein S6--L-glutamate ligase — —
Rhodanobacter sp. FW510-T8 0.43 OKGIIK_06880 Phosphatase NudJ 0.56 OKGIIK_11870 rimK 30S ribosomal protein S6--L-glutamate ligase low > 52
Rhodanobacter denitrificans MT42 0.43 LRK55_RS00170 NUDIX hydrolase 0.55 LRK55_RS11740 30S ribosomal protein S6--L-glutamate ligase low > 63
Rhodanobacter denitrificans FW104-10B01 0.42 LRK54_RS00430 NUDIX hydrolase 0.55 LRK54_RS12005 30S ribosomal protein S6--L-glutamate ligase low > 59
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_04652 ADP-ribose pyrophosphatase YjhB, NUDIX family 0.14 H281DRAFT_01302 SSU ribosomal protein S6P modification protein low > 103
Paraburkholderia sabiae LMG 24235 0.40 QEN71_RS26735 NUDIX hydrolase 0.14 QEN71_RS34085 RimK family alpha-L-glutamate ligase — —
Kangiella aquimarina DSM 16071 0.38 B158DRAFT_1838 ADP-ribose pyrophosphatase 0.66 B158DRAFT_2473 alpha-L-glutamate ligases, RimK family low > 40
Variovorax sp. OAS795 0.37 ABID97_RS04420 NUDIX hydrolase 0.11 ABID97_RS12585 RimK family alpha-L-glutamate ligase — —
Shewanella loihica PV-4 0.35 Shew_1561 NUDIX hydrolase (RefSeq) 0.73 Shew_3664 alpha-L-glutamate ligase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.35 Sama_2061 MutT/nudix family protein (RefSeq) 0.75 Sama_1299 ribosomal protein S6 modification protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.31 Shewana3_1748 NUDIX hydrolase (RefSeq) 0.75 Shewana3_2274 SSU ribosomal protein S6P modification protein (RefSeq) low > 73
Escherichia coli ECOR27 0.31 NOLOHH_20895 nudJ phosphatase NudJ 0.66 NOLOHH_22340 rimK 30S ribosomal protein S6--L-glutamate ligase low > 75
Escherichia coli Nissle 1917 0.31 ECOLIN_RS06630 phosphatase NudJ 0.66 ECOLIN_RS04535 30S ribosomal protein S6--L-glutamate ligase — —
Escherichia coli ECRC99 0.31 KEDOAH_24835 nudJ phosphatase NudJ 0.66 KEDOAH_21940 rimK 30S ribosomal protein S6--L-glutamate ligase — —
Escherichia coli BW25113 0.31 b1134 ymfB bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) 0.66 b0852 rimK ribosomal protein S6 modification protein (NCBI) low > 76
Escherichia coli ECRC100 0.31 OKFHMN_00750 nudJ phosphatase NudJ 0.66 OKFHMN_05970 rimK 30S ribosomal protein S6--L-glutamate ligase low > 80
Escherichia coli ECRC98 0.31 JDDGAC_06615 nudJ phosphatase NudJ 0.66 JDDGAC_09605 rimK 30S ribosomal protein S6--L-glutamate ligase low > 86
Escherichia coli ECRC101 0.31 MCAODC_22335 nudJ phosphatase NudJ 0.66 MCAODC_25185 rimK 30S ribosomal protein S6--L-glutamate ligase low > 87
Escherichia coli ECRC62 0.31 BNILDI_19060 nudJ phosphatase NudJ 0.66 BNILDI_20595 rimK 30S ribosomal protein S6--L-glutamate ligase low > 75
Escherichia coli ECRC102 0.31 NIAGMN_24895 nudJ phosphatase NudJ 0.66 NIAGMN_04015 rimK 30S ribosomal protein S6--L-glutamate ligase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.31 OHPLBJKB_02534 Phosphatase NudJ 0.66 OHPLBJKB_02816 Ribosomal protein S6--L-glutamate ligase low > 73
Escherichia fergusonii Becca 0.31 EFB2_02841 Phosphatase NudJ 0.66 EFB2_03209 Ribosomal protein S6--L-glutamate ligase low > 86
Escherichia coli ECOR38 0.31 HEPCGN_24225 nudJ phosphatase NudJ 0.66 HEPCGN_02060 rimK 30S ribosomal protein S6--L-glutamate ligase low > 87
Serratia liquefaciens MT49 0.31 IAI46_10445 NUDIX hydrolase 0.67 IAI46_08360 30S ribosomal protein S6--L-glutamate ligase low > 86
Escherichia coli BL21 0.30 ECD_01132 bifunctional thiamine pyrimidine pyrophosphate hydrolase and thiamine pyrophosphate hydrolase 0.66 ECD_00857 ribosomal protein S6 modification protein — —
Rahnella sp. WP5 0.30 EX31_RS24580 NUDIX hydrolase 0.66 EX31_RS09640 30S ribosomal protein S6--L-glutamate ligase low > 89
Dickeya dadantii 3937 0.29 DDA3937_RS11480 NUDIX hydrolase 0.66 DDA3937_RS09450 30S ribosomal protein S6--L-glutamate ligase 0.45 32
Shewanella oneidensis MR-1 0.29 SO2631 MutT/nudix family protein (NCBI ptt file) 0.75 SO2270 rimK-2 ribosomal protein S6 modification protein (NCBI ptt file) low > 76
Enterobacter sp. TBS_079 0.28 MPMX20_01818 Phosphatase NudJ 0.64 MPMX20_01493 Ribosomal protein S6--L-glutamate ligase low > 85
Pantoea sp. MT58 0.28 IAI47_11910 NUDIX hydrolase 0.63 IAI47_13055 30S ribosomal protein S6--L-glutamate ligase low > 76
Enterobacter asburiae PDN3 0.28 EX28DRAFT_1796 ADP-ribose pyrophosphatase 0.64 EX28DRAFT_2101 alpha-L-glutamate ligase, RimK family low > 76
Dickeya dianthicola ME23 0.27 DZA65_RS11860 NUDIX hydrolase 0.67 DZA65_RS09780 30S ribosomal protein S6--L-glutamate ligase low > 75
Dickeya dianthicola 67-19 0.27 HGI48_RS11525 NUDIX hydrolase 0.67 HGI48_RS09470 30S ribosomal protein S6--L-glutamate ligase low > 71
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.27 GFF3419 Nudix-like NDP and NTP phosphohydrolase YmfB 0.64 GFF756 Ribosomal protein S6 glutaminyl transferase low > 78
Pectobacterium carotovorum WPP14 0.26 HER17_RS11620 NUDIX hydrolase 0.66 HER17_RS12510 30S ribosomal protein S6--L-glutamate ligase low > 75
Klebsiella michiganensis M5al 0.26 BWI76_RS11320 NUDIX hydrolase 0.64 BWI76_RS09450 30S ribosomal protein S6--L-glutamate ligase — —

Not shown: 16 genomes with orthologs for PS417_16535 only; 4 genomes with orthologs for PS417_01180 only