Conservation of cofitness between GFF3044 and GFF2007 in Sphingobium sp. HT1-2

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sphingobium sp. HT1-2 1.0 GFF3044 Outer membrane protein W precursor 1.0 GFF2007 Phosphoenolpyruvate-protein phosphotransferase, nitrogen regulation associated 0.70 13
Azospirillum sp. SherDot2 0.33 MPMX19_04896 Outer membrane protein W 0.43 MPMX19_02675 Phosphoenolpyruvate-dependent phosphotransferase system low > 112
Azospirillum brasilense Sp245 0.31 AZOBR_RS20245 membrane protein 0.44 AZOBR_RS18900 peptidase low > 97
Pseudomonas sp. SVBP6 0.30 COO64_RS15940 OmpW family protein 0.24 COO64_RS12700 ptsP phosphoenolpyruvate--protein phosphotransferase low > 93
Bosea sp. OAE506 0.30 ABIE41_RS06175 OmpW family protein 0.45 ABIE41_RS23820 phosphoenolpyruvate--protein phosphotransferase low > 77
Xanthobacter sp. DMC5 0.30 GFF2491 Outer membrane protein W 0.45 GFF1659 Phosphoenolpyruvate-dependent phosphotransferase system — —
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_4473 OmpW 0.24 Psyr_4842 Phosphoenolpyruvate-protein phosphotransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_4473 OmpW 0.24 Psyr_4842 Phosphoenolpyruvate-protein phosphotransferase low > 86
Pantoea agglomerans CFBP13505 P0401 0.29 PagCFBP13505_RS02995 outer membrane protein OmpW 0.22 PagCFBP13505_RS17045 phosphoenolpyruvate--protein phosphotransferase low > 74
Pseudomonas stutzeri RCH2 0.29 Psest_3571 Outer membrane protein W 0.24 Psest_3862 phosphoenolpyruvate-protein phosphotransferase low > 67
Pseudomonas putida KT2440 0.28 PP_0504 Outer membrane protein OprG 0.24 PP_5145 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) low > 96
Klebsiella pneumoniae MKP103 0.28 KDGMDA_19485 outer membrane protein OmpW 0.23 KDGMDA_03855 phosphoenolpyruvate--protein phosphotransferase low > 95
Pantoea sp. MT58 0.28 IAI47_09155 outer membrane protein OmpW 0.22 IAI47_03920 phosphoenolpyruvate--protein phosphotransferase low > 76
Pseudomonas sp. BP01 0.28 JOY50_RS20175 OmpW family protein 0.24 JOY50_RS20665 ptsP phosphoenolpyruvate--protein phosphotransferase low > 84
Enterobacter asburiae PDN3 0.28 EX28DRAFT_0927 Outer membrane protein W 0.23 EX28DRAFT_2904 phosphoenolpyruvate-protein phosphotransferase low > 76
Pseudomonas orientalis W4I3 0.28 QF045_RS27280 OmpW family outer membrane protein 0.24 QF045_RS01375 phosphoenolpyruvate--protein phosphotransferase low > 93
Erwinia amylovora T8 0.28 OLJFJH_13460 outer membrane protein OmpW 0.23 OLJFJH_09055 phosphoenolpyruvate--protein phosphotransferase low > 58
Marinobacter adhaerens HP15 0.28 HP15_3604 outer membrane protein OmpW 0.24 HP15_463 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain protein low > 73
Pseudomonas sp. S08-1 0.28 OH686_15635 Outer membrane protein W precursor 0.24 OH686_11430 Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated 0.71 14
Enterobacter sp. TBS_079 0.27 MPMX20_02571 Outer membrane protein W 0.23 MPMX20_03692 Phosphoenolpyruvate-dependent phosphotransferase system low > 85
Dickeya dianthicola 67-19 0.27 HGI48_RS10450 outer membrane protein OmpW 0.24 HGI48_RS04960 phosphoenolpyruvate--protein phosphotransferase low > 71
Rhodopseudomonas palustris CGA009 0.27 TX73_023375 OmpW family protein 0.47 TX73_003130 phosphoenolpyruvate--protein phosphotransferase low > 86
Shewanella loihica PV-4 0.27 Shew_2554 outer membrane protein W (RefSeq) 0.23 Shew_1039 phosphoenolpyruvate-protein phosphotransferase PtsP (RefSeq) low > 60
Pseudomonas lactucae CFBP13502 0.27 GEMAOFIL_05168 Outer membrane protein W 0.24 GEMAOFIL_05538 Phosphoenolpyruvate-dependent phosphotransferase system low > 96
Dickeya dianthicola ME23 0.27 DZA65_RS10930 outer membrane protein OmpW 0.24 DZA65_RS05300 phosphoenolpyruvate--protein phosphotransferase low > 75
Pseudomonas simiae WCS417 0.27 PS417_25315 membrane protein 0.24 PS417_26985 phosphoenolpyruvate-protein phosphotransferase low > 88
Rahnella sp. WP5 0.27 EX31_RS09990 outer membrane protein OmpW 0.22 EX31_RS13200 phosphoenolpyruvate--protein phosphotransferase low > 89
Pseudomonas fluorescens SBW25-INTG 0.27 PFLU_RS26950 outer membrane beta-barrel protein 0.24 PFLU_RS28645 phosphoenolpyruvate--protein phosphotransferase low > 109
Pseudomonas fluorescens SBW25 0.27 PFLU_RS26950 outer membrane beta-barrel protein 0.24 PFLU_RS28645 phosphoenolpyruvate--protein phosphotransferase low > 109
Serratia liquefaciens MT49 0.27 IAI46_14055 outer membrane protein OmpW 0.23 IAI46_20450 phosphoenolpyruvate--protein phosphotransferase low > 87
Escherichia coli Nissle 1917 0.26 ECOLIN_RS07580 outer membrane protein OmpW 0.24 ECOLIN_RS15875 phosphoenolpyruvate--protein phosphotransferase low > 55
Agrobacterium fabrum C58 0.26 Atu3191 outer membrane protein 0.43 Atu4173 phosphoenolpyruvate-protein phosphotransferase low > 89
Escherichia coli ECRC100 0.26 OKFHMN_28695 ompW outer membrane protein OmpW 0.24 OKFHMN_20005 ptsP phosphoenolpyruvate--protein phosphotransferase low > 79
Pseudomonas segetis P6 0.26 MPMX49_00973 Outer membrane protein W 0.23 MPMX49_00587 Phosphoenolpyruvate-dependent phosphotransferase system low > 75
Escherichia fergusonii Becca 0.26 EFB2_02669 Outer membrane protein W 0.24 EFB2_01055 Phosphoenolpyruvate-dependent phosphotransferase system low > 86
Escherichia coli BW25113 0.26 b1256 ompW outer membrane protein W (NCBI) 0.24 b2829 ptsP fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) low > 76
Escherichia coli ECOR38 0.26 HEPCGN_25160 ompW outer membrane protein OmpW 0.24 HEPCGN_19260 ptsP phosphoenolpyruvate--protein phosphotransferase low > 88
Klebsiella michiganensis M5al 0.26 BWI76_RS11810 outer membrane protein OmpW 0.23 BWI76_RS23270 phosphoenolpyruvate--protein phosphotransferase PtsP low > 92
Dickeya dadantii 3937 0.26 DDA3937_RS10450 outer membrane protein OmpW 0.24 DDA3937_RS04950 phosphoenolpyruvate--protein phosphotransferase low > 74
Escherichia coli ECRC62 0.26 BNILDI_18500 ompW outer membrane protein OmpW 0.24 BNILDI_10370 ptsP phosphoenolpyruvate--protein phosphotransferase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.26 OHPLBJKB_02427 Outer membrane protein W 0.24 OHPLBJKB_00901 Phosphoenolpyruvate-dependent phosphotransferase system low > 74
Escherichia coli BL21 0.26 ECD_01230 outer membrane protein W 0.24 ECD_02677 PEP-protein phosphotransferase enzyme I; GAF domain containing protein low > 61
Escherichia coli ECOR27 0.26 NOLOHH_20355 ompW outer membrane protein OmpW 0.24 NOLOHH_11890 ptsP phosphoenolpyruvate--protein phosphotransferase low > 76
Escherichia coli ECRC98 0.26 JDDGAC_05880 ompW outer membrane protein OmpW 0.24 JDDGAC_23670 ptsP phosphoenolpyruvate--protein phosphotransferase 0.39 73
Escherichia coli ECRC99 0.26 KEDOAH_25690 ompW outer membrane protein OmpW 0.24 KEDOAH_08125 ptsP phosphoenolpyruvate--protein phosphotransferase — —
Escherichia coli ECRC102 0.26 NIAGMN_27540 ompW outer membrane protein OmpW 0.24 NIAGMN_17775 ptsP phosphoenolpyruvate--protein phosphotransferase low > 80
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.26 GFF2731 Outer membrane protein W precursor 0.23 GFF1311 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated low > 78
Escherichia coli ECRC101 0.26 MCAODC_21565 ompW outer membrane protein OmpW 0.24 MCAODC_10530 ptsP phosphoenolpyruvate--protein phosphotransferase low > 87
Vibrio cholerae E7946 ATCC 55056 0.26 CSW01_18465 outer membrane protein W 0.24 CSW01_03525 phosphoenolpyruvate-protein phosphotransferase PtsP low > 62
Pseudomonas fluorescens GW456-L13 0.26 PfGW456L13_1302 Outer membrane protein W precursor 0.24 PfGW456L13_953 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated low > 87
Caulobacter crescentus NA1000 Δfur 0.26 CCNA_01475 OmpW family outer membrane cation channel 0.44 CCNA_00892 phosphoenolpyruvate-protein phosphotransferase PtsP low > 67
Shewanella sp. ANA-3 0.26 Shewana3_2775 outer membrane protein W (RefSeq) 0.24 Shewana3_3042 phosphoenolpyruvate-protein phosphotransferase PtsP (RefSeq) low > 73
Pseudomonas fluorescens FW300-N2E3 0.26 AO353_06765 hypothetical protein 0.24 AO353_08465 phosphoenolpyruvate-protein phosphotransferase low > 101
Caulobacter crescentus NA1000 0.26 CCNA_01475 OmpW family outer membrane cation channel 0.44 CCNA_00892 phosphoenolpyruvate-protein phosphotransferase PtsP 0.38 14
Pseudomonas aeruginosa PA14 0.26 IKLFDK_20960 outer membrane protein OprG 0.23 IKLFDK_23750 phosphoenolpyruvate--protein phosphotransferase low > 98
Pseudomonas aeruginosa PUPa3 0.26 DQ20_RS47850 oprG;inference=COORDINATES outer membrane protein OprG 0.23 DQ20_RS37640 ptsP;inference=COORDINATES phosphoenolpyruvate--protein phosphotransferase low > 101
Pseudomonas aeruginosa MRSN321 0.26 DY961_RS27800 oprG;inference=COORDINATES outer membrane protein OprG 0.23 DY961_RS21655 ptsP;inference=COORDINATES phosphoenolpyruvate--protein phosphotransferase low > 100
Pseudomonas sp. DMC3 0.25 GFF3814 Outer membrane protein W 0.24 GFF264 Phosphoenolpyruvate-dependent phosphotransferase system low > 89
Alteromonas macleodii MIT1002 0.25 MIT1002_00027 Outer membrane protein W precursor 0.23 MIT1002_00648 Phosphoenolpyruvate-protein phosphotransferase low > 70
Pectobacterium carotovorum WPP14 0.25 HER17_RS10950 outer membrane protein OmpW 0.23 HER17_RS16580 phosphoenolpyruvate--protein phosphotransferase low > 75
Shewanella amazonensis SB2B 0.25 Sama_1371 outer membrane protein W (RefSeq) 0.24 Sama_0864 phosphoenolpyruvate-protein phosphotransferase PtsP (RefSeq) low > 62
Pseudomonas sp. RS175 0.24 PFR28_03959 Outer membrane protein W 0.24 PFR28_04830 Phosphoenolpyruvate-dependent phosphotransferase system low > 88
Pseudomonas fluorescens FW300-N1B4 0.24 Pf1N1B4_2639 Outer membrane protein W precursor 0.24 Pf1N1B4_2284 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated low > 87
Shewanella oneidensis MR-1 0.24 SO1673 outer membrane protein OmpW, putative (NCBI ptt file) 0.24 SO1332 ptsP phosphoenolpyruvate-protein phosphotransferase PtsP (NCBI ptt file) low > 76
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_14880 hypothetical protein 0.24 AO356_10350 phosphoenolpyruvate-protein phosphotransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.24 Pf6N2E2_4909 Outer membrane protein W precursor 0.24 Pf6N2E2_3942 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated low > 103
Dinoroseobacter shibae DFL-12 0.22 Dshi_1299 OmpW family protein (RefSeq) 0.38 Dshi_2062 PTSINtr with GAF domain, PtsP (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.20 PGA1_c10290 outer membrane protein 0.37 PGA1_c23500 phosphoenolpyruvate-protein phosphotransferase PtsP low > 62
Acinetobacter baumannii LAC-4 0.12 RR41_RS17510 outer membrane beta-barrel protein 0.23 RR41_RS16935 phosphoenolpyruvate--protein phosphotransferase — —

Not shown: 17 genomes with orthologs for GFF3044 only; 9 genomes with orthologs for GFF2007 only